REL: Release 1.0.0#243

Merged

shaneahmed merged 222 commits intomasterfrom

Dec 23, 2021

Commits on Jun 1, 2020

STY: Apply Black formatting
John-P
committed

Commits on Jun 18, 2020

Hotfix: Travis configuration missing space (#3)
John-P
authored

Commits on Jun 19, 2020

Feature slide info (#1)
shaneahmed
authored

Commits on Jul 2, 2020

DOC: Add Badges To Readme + Center Heading
John-P
authored

Commits on Jul 3, 2020

DOC: Create Read The Docs Configuration
John-P
authored

Commits on Jul 8, 2020

NEW: Add Feature to Read a Region from Whole Slide Image #10

shaneahmed
and
John-P
authored

Commits on Jul 10, 2020

Commits on Jul 12, 2020

Merge remote-tracking branch 'origin/master' into develop
shaneahmed
committed
Merge remote-tracking branch 'origin/master' into develop
shaneahmed
committed

Commits on Jul 17, 2020

DOC: Add authors contribution
shaneahmed
authored

Commits on Jul 18, 2020

Commits on Aug 3, 2020

API: Restructure WSIReader to allow support for additional formats (#21)
shaneahmed
authored

Commits on Aug 17, 2020

Commits on Aug 26, 2020

DOC: Add licences block to all files
Srijay-lab
authored

Commits on Sep 11, 2020

DEP: Depreciate support for multiprocessing (#32)
shaneahmed
authored

Commits on Sep 18, 2020

TST: Redfine and Optimise Tests
shaneahmed
authored

Commits on Sep 23, 2020

Commits on Sep 29, 2020

NEW: Metadata Class (#26)
John-P
authored
DEP: Remove setuptools version
shaneahmed
committed

Commits on Oct 7, 2020

NEW: Feature OmnyxJP2 reader (#23)
shaneahmed
authored

Commits on Oct 8, 2020

NEW: Feature Stain Normalisation Ruifrok & Reinhard (#35)
simongraham
authored

Commits on Oct 9, 2020

Commits on Oct 12, 2020

HOT: Update JP2 image for tests (#43)
shaneahmed
authored

Commits on Nov 2, 2020

NEW: Read Regions With Variable Resolution (#40)

John-P
and
shaneahmed
authored

Commits on Nov 6, 2020

BUG: Fix Reading Thumbnail In WSIReader (#50)
John-P
authored

Commits on Nov 9, 2020

TST: Split tests into multiple files (#52)
shaneahmed
authored

Commits on Nov 17, 2020

API: Update wsireader.py
shaneahmed
committed
REV: API "API: Update wsireader.py"
shaneahmed
committed

Commits on Nov 18, 2020

Commits on Nov 25, 2020

EXAMPLE: Add stainnorm example + MAINT for other notebooks (#51)
vqdang
authored

Commits on Nov 30, 2020

NEW: Feature VFReader (#56)
shaneahmed
authored

Commits on Dec 1, 2020

HOTFIX: Fix save_tiles (#57)
shaneahmed
authored

Commits on Dec 3, 2020

BUG : Directory input for stainnorm operation in cli (#58)
Srijay-lab
authored

Commits on Dec 18, 2020

Commits on Dec 22, 2020

Commits on Dec 23, 2020

Commits on Dec 24, 2020

ENH: Add `get_wsireader()` to return appropriate WSIReader (#70)
shaneahmed
authored

Commits on Dec 30, 2020

Commits on Dec 31, 2020

Commits on Jan 8, 2021

NEW: Add Safe & Sub-Pixel Image Reads (#62)
John-P
authored

Commits on Jan 14, 2021

Example notebook tidyup (#79)
R-J96
authored

Commits on Feb 5, 2021

DOC: Fix Output Path file_path in Example of slide_info (#84)
Srijay-lab
authored

Commits on Feb 12, 2021

DOC: Add Alpha Channel To Logo (#85)
John-P
authored

Commits on Mar 5, 2021

BUG: Update URL for JP2 Test Image (#87)
John-P
authored

Commits on Apr 6, 2021

Commits on Apr 12, 2021

Commits on Apr 13, 2021

Commits on Apr 21, 2021

NEW: Feature Fixed Window Patch Extraction (#97)
shaneahmed
authored

Commits on Apr 26, 2021

MAINT: Link test data to tiatoolbox server (#99)
ghadjigeorghiou
authored

Commits on Apr 28, 2021

EG: patchextraction (#100)
mostafajahanifar
authored

Commits on Apr 30, 2021

DOC: Edit README to restyle chapters on readthedocs (#101)
shaneahmed
authored

Commits on May 5, 2021

NEW: Tissue Masking (#61)
John-P
authored

Commits on May 10, 2021

ENH: Add command line usage for tissue masking (#102)
shaneahmed
authored

Commits on May 15, 2021

NEW: Implement patch classification models framework (#98)
simongraham
authored

Commits on May 21, 2021

MAINT: Change the name of stainnorm to stain_norm (#115)
Srijay-lab
authored

Commits on May 24, 2021

HOTFIX: Update model URLs to fix tests (#117)
simongraham
authored

Commits on May 25, 2021

DOC: update notebooks and documentation (#114)
shaneahmed
authored

Commits on Jun 1, 2021

API: changing `FixedWindowPatchExtractor` to `SlidingWindowPatchExtractor` (#121)
mostafajahanifar
authored

Commits on Jun 4, 2021

DOC: Fix examples in module docstring (#122)
Srijay-lab
authored

Commits on Jun 9, 2021

ENH: Add functionality to read through mask in `patchextraction` (#120)
mostafajahanifar
authored

Commits on Jun 11, 2021

DOC: Update Python Notebooks (#94)
DavidBAEpstein
authored

Commits on Jun 16, 2021

NEW: Add Visualization from Model Prediction for WSI (#126)
vqdang
authored

Commits on Jun 18, 2021

DEP: Remove files from `tests/data` (#129)
shaneahmed
authored

Commits on Jun 25, 2021

ENH: Allow WSI reading at requested resolution + synchronized read with VirtualReader (#123)
vqdang
authored

Commits on Jul 2, 2021

DOC: Add installation instructions for various platforms (#127)
shaneahmed
authored

Commits on Jul 23, 2021

NEW: Add WSI and Tile patch-level prediction functionality (#109)
simongraham
authored

Commits on Aug 13, 2021

DOC: Update Introduction sections in Python Notebooks (#132)
shaneahmed
authored

Commits on Aug 27, 2021

Commits on Sep 9, 2021

Commits on Sep 10, 2021

DEV: Add Import Sorting & Extra Flake8 Rules (#141)
John-P
authored

Commits on Sep 12, 2021

ENH: Update the patch prediction example notebook based on new API (#136)
mostafajahanifar
authored

Commits on Sep 13, 2021

DOC: Update patch predictor notebook
shaneahmed
authored

Commits on Oct 5, 2021

DOC: Add examples of read_rect and read_bounds in wsi_reader notebook (#147)
Srijay-lab
authored

Commits on Oct 8, 2021

DEV: Fix URL in setup.py (#154)
wenqi006
authored

Commits on Oct 13, 2021

DEV: Re-Organise Loading of Bundled Resources & Remote Samples (#153)
John-P
authored

Commits on Oct 14, 2021

Commits on Oct 18, 2021

Commits on Oct 19, 2021

DEV: Make CLI POSIX compatible (#161)
shaneahmed
authored

Commits on Oct 20, 2021

Commits on Oct 21, 2021

Commits on Oct 22, 2021

DEV: Optimise tests model abc (#170)
shaneahmed
authored

Commits on Oct 25, 2021

Commits on Oct 29, 2021

DOC: Update licence block (#183)
shaneahmed
authored

Commits on Nov 1, 2021

API: Change `models.controller` API to `models.engine` (#185)
Srijay-lab
authored

Commits on Nov 3, 2021

Commits on Nov 4, 2021

DEV: Update links for Kather dataset (#173)
shaneahmed
authored

Commits on Nov 5, 2021

DEV: Simplify tests for semantic segmentation engine (#190)
vqdang
authored

Commits on Nov 9, 2021

NEW: Add stainaugment feature for stain augmentation (#181)
mostafajahanifar
authored

Commits on Nov 10, 2021

NEW: Add Feature Model Nuclei Instance Segmentation (#119)
vqdang
authored

Commits on Nov 11, 2021

EG: add example notebook on advanced model techniques (#174)
mostafajahanifar
authored

Commits on Nov 16, 2021

EG: Updating Example Notebooks 5 and 6 (#191)
mostafajahanifar
authored

Commits on Nov 22, 2021

Commits on Nov 23, 2021

NEW: Add SlideGraph Construction Method In Tools (#155)
John-P
authored

Commits on Nov 24, 2021

Commits on Nov 26, 2021

Commits on Nov 29, 2021

ENH: Swap pygeos to shapely (#202)
vqdang
authored

Commits on Dec 2, 2021

Commits on Dec 7, 2021

DEV: Add Auxiliary Functionality For SlideGraph (#208)
vqdang
authored

Commits on Dec 8, 2021

Commits on Dec 10, 2021

BUG: Fix Masked Patch Extraction (#200)
mostafajahanifar
authored

Commits on Dec 13, 2021

DOC: Add README.md to the Example Page (#215)

authored

Commits on Dec 15, 2021

BUG: overlay_patch_prediction to overlay_prediction_mask and some typos (#218)

authored

Commits on Dec 17, 2021

Commits on Dec 18, 2021

Commits on Dec 20, 2021

Commits on Dec 21, 2021

Commits on Dec 22, 2021

Commits on Dec 23, 2021