Update linting using pre-commit

[sbrugman]

• extend nbqa usage
• bump check-manifest

[codecov]

Codecov Report

Merging #628 (d969c8a) into develop (8b185ab) will increase coverage by 1.12%.
The diff coverage is 98.63%.

@@             Coverage Diff             @@
##           develop     #628      +/-   ##
===========================================
+ Coverage    87.95%   89.08%   +1.12%     
===========================================
  Files          122      124       +2     
  Lines         3164     3233      +69     
===========================================
+ Hits          2783     2880      +97     
+ Misses         381      353      -28     

Flag	Coverage Δ
examples	30.63% <15.25%> (-0.42%)	⬇️
issue	81.09% <98.59%> (+4.01%)	⬆️
unit	86.07% <98.36%> (+1.19%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
setup.py	0.00% <0.00%> (ø)
src/pandas_profiling/controller/console.py	96.15% <ø> (ø)
src/pandas_profiling/model/correlations.py	94.79% <ø> (+8.33%)	⬆️
src/pandas_profiling/model/describe.py	97.05% <ø> (ø)
...profiling/report/presentation/flavours/__init__.py	100.00% <ø> (ø)
...profiling/report/presentation/flavours/flavours.py	72.72% <ø> (+12.72%)	⬆️
...iling/report/structure/variables/render_boolean.py	100.00% <ø> (ø)
...iling/report/structure/variables/render_complex.py	25.00% <ø> (ø)
...ofiling/report/structure/variables/render_count.py	29.41% <ø> (+0.84%)	⬆️
...rofiling/report/structure/variables/render_date.py	100.00% <ø> (ø)
... and 40 more

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