Linking in Azure Linux AppService after v1.9.4 not working - EBADF: bad file descriptor, copyfile

[michaelmiklis]

When running yarn version higher than 1.9.4 linking will fail with random packages / files:

error An unexpected error occurred: "EBADF: bad file descriptor, copyfile '/usr/local/share/.cache/yarn/v2/npm-amdefine-1.0.1-4a5282ac164729e93619bcfd3ad151f817ce91f5/LICE
NSE' -> '/home/site/wwwroot/node_modules/amdefine/LICENSE'".

It is reproducible when installing yarn using "npm install yarn@Version" and triggering yarn:
node node_modules/yarn/bin/yarn.js install --production --non-interactive --force

Version 1.9.4 is working, version 1.10.0 is the first version throwing an error. Maybe it is related to #5456

package.txt

[st-bender]

Hi,
I ran into a similar problem where jupterlab wouldn't build (jupyterlab/jupyterlab#6969).
#5456 (and the update #6432) really seems to be the culprit, replacing ficloneFlag by 0 fixed my problem, maybe it will fix yours as well?

Cheers.

[st-bender]

Hi,
It's been a while, I think the problem was in libuv and should be fixed with the latest release (v1.33.0) of libuv. Could you check? It probably takes some time to propagate to the packagers, though.
Cheers.

[michaelmiklis]

Hello,
is libuv part of the yarn npm package or how can i get the latest version?
kind regards

[st-bender]

Hello,
is libuv part of the yarn npm package or how can i get the latest version?
kind regards

Hi, I think it is bundled with node.js. A pull request has been submitted, I guess it will take a few days to show up as an update. If you know how to compile things, you could check out the libuv repository and compile it yourself to replace the current one.
Depends a little on your setup how difficult that will be.

Btw., did you try to edit the yarn program file as suggested above?

Cheers.

[st-bender]

Hi again,
The bug is fixed for me by updating libuv to the latest version (v1.33.1).
The updated library and a new version of nodejs are at least available via the python conda package manager. I don't know how your setup looks like, you could try updating npm via npm install -g npm, or maybe you find something useful here:
https://stackoverflow.com/questions/6237295/how-can-i-update-nodejs-and-npm-to-the-next-versions
Cheers.

[FossPrime]

I'm also experiencing this in android-x86-termux. I manually installed libuv 1.43, but it seems to be ignored. It seems to reliably fail while installing the first package on the list '@babel/code-frame'.

~/tdps/learn-admin $ npm --version
8.3.1
~/tdps/learn-admin $ yarn --version
1.22.17
~/tdps/learn-admin $ node --version
v17.4.0