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@westlake-repl

westlake-repl

README.md

Hi there 👋

🙋‍♀️ This is Westlake Representation Learning Lab, led by Dr. Fajie Yuan.

👩‍💻 We're focusing on two major research directions:

  • AI4Biology.
  • Taditional AI research

🤗 Our lab is now recruiting self-motivated interns / full-time (posdoc/assistant) researchers/ Ph.D. students in machine learning and Life AI. 实验室招聘科研助理，实习生，博士生和博士后，请邮件联系.

西湖大学25年秋季博士招生，有1个名额，欢迎申请和联系

We also have PhD places for students outside of China for the 2026 season. Feel free to contact!

🛠️ Tools: AI tools for protein research

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  1. SaProt SaProt Public

    Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

    Python 507 51

  2. SaprotHub SaprotHub Public

    Making Protein Modeling Accessible to All Biologists

    Jupyter Notebook 119 14

  3. Denovo-Pinal Denovo-Pinal Public

    Text-guided protein design

    Python 85 7

  4. Evolla Evolla Public

    ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.

    Python 58 5

  5. ProTrek ProTrek Public

    ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

    Python 131 10

  6. MicroLens MicroLens Public

    A Large Short-video Recommendation Dataset with Raw Text/Audio/Image/Videos (Talk Invited by DeepMind).

    Python 214 16

Repositories

Showing 10 of 23 repositories
  • SaprotHub Public

    Making Protein Modeling Accessible to All Biologists

    westlake-repl/SaprotHub’s past year of commit activity
    Jupyter Notebook 119 MIT 14 2 0 Updated Sep 26, 2025
  • Denovo-Pinal Public

    Text-guided protein design

    westlake-repl/Denovo-Pinal’s past year of commit activity
    Python 85 7 0 0 Updated Sep 17, 2025
  • ProTrek Public

    ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

    westlake-repl/ProTrek’s past year of commit activity
    Python 131 MIT 10 1 0 Updated Sep 13, 2025
  • NRPStransformer Public

    A Transformer-Based Predictor for Nonribosomal Peptide Synthetases (NRPS) Specificity. Published in JACS (DOI: 10.1021/jacs.5c08076).

    westlake-repl/NRPStransformer’s past year of commit activity
    Python 5 MIT 2 0 0 Updated Sep 11, 2025
  • LeanVAE Public

    [ICCV2025]LeanVAE: An Ultra-Efficient Reconstruction VAE for Video Diffusion Models

    westlake-repl/LeanVAE’s past year of commit activity
    Python 44 MIT 3 2 0 Updated Sep 8, 2025
  • TCF Public
    westlake-repl/TCF’s past year of commit activity
    Python 2 0 0 0 Updated Aug 29, 2025
  • SaProt Public

    Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

    westlake-repl/SaProt’s past year of commit activity
    Python 507 MIT 51 25 0 Updated Aug 19, 2025
  • Cryo-IEF Public

    A comprehensive foundation model for cryo-EM image processing

    westlake-repl/Cryo-IEF’s past year of commit activity
    JavaScript 30 MIT 0 0 0 Updated Aug 14, 2025
  • ESM-Ezy Public
    westlake-repl/ESM-Ezy’s past year of commit activity
    Python 30 MIT 6 3 0 Updated Jul 30, 2025
  • .github Public
    westlake-repl/.github’s past year of commit activity
    0 0 0 0 Updated Apr 9, 2025
View all repositories

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