This is the repository for developing a napari plugin for the deep ensamble U-net model presented in Kaminski et al. (2021) and used in Montañana-Rosell et al. (2023).
In this repository, you will find the python translation of the R code used in Montañana-Rosell et al. (2023) located in the Montañana-Rosell translation folder. You will also find the plugin in its current state.
Currently, the U-net implemented in the plugin is SachinSamuel01's simple-cell-segmentation - moving forward, the deep ensamble U-net will be implemented instead. The post-analysis from Montañana-Rosell et al. (2023) will also be included as part of the plugin.