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DOC: dcm2niix - details for the output filename pattern, minor typo fix #2512

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merged 2 commits into from
Mar 27, 2018
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DOC: dcm2niix - details for the output filename pattern, minor typo fix #2512

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DOC: dcm2niix - details for the output filename pattern, minor typo f…
yarikoptic Mar 26, 2018
230ec4b
STY: Unnecessary backslashes
effigies Mar 27, 2018
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21 changes: 19 additions & 2 deletions nipype/interfaces/dcm2nii.py
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Original file line number Diff line number Diff line change
Expand Up @@ -275,7 +275,24 @@ class Dcm2niixInputSpec(CommandLineInputSpec):
xor=['source_names'])
out_filename = traits.Str(
argstr="-f %s",
desc="Output filename")
desc="Output filename template ("
"%a=antenna (coil) number, "
"%c=comments, "
"%d=description, "
"%e=echo number, "
"%f=folder name, "
"%i=ID of patient, "
"%j=seriesInstanceUID, "
"%k=studyInstanceUID, "
"%m=manufacturer, "
"%n=name of patient, "
"%p=protocol, "
"%s=series number, "
"%t=time, "
"%u=acquisition number, "
"%v=vendor, "
"%x=study ID; "
"%z=sequence name)")
output_dir = Directory(
".",
usedefault=True,
Expand Down Expand Up @@ -320,7 +337,7 @@ class Dcm2niixInputSpec(CommandLineInputSpec):
False,
argstr='-t',
usedefault=True,
desc="Flag if text notes includes private patient details")
desc="Flag if text notes include private patient details")
compression = traits.Enum(
1, 2, 3, 4, 5, 6, 7, 8, 9,
argstr='-%d',
Expand Down