Create an ibnetdiscover file anytime the system is rebooted. From moab, type:
ibnetdiscover /lustre/janus_scratch/molu8455/infiniband/meta/ibnetdiscover-<date>
Convert this file into a list linking nodes to lids.
cd meta
python python create_node_lid.py ibnetdiscover-2-12-2014
Each job will get a unique directory called test-$PBS_JOBID. The results file will be named results.$PBS_JOBID.
Edit the submit.pbs script and type:
qsub submit.pbs
Modify at submission time.
qsub -I -l nodes=100:ppn=12 submit.pbs
Parse individual files using the parse.py script.
python parse.py ../collect/test-<JOB_ID>/results.<JOB_ID>
Parse all the files in the ../collect/test-* directory:
python parse_all.py
The ouput directory is specified in the config.py file.
python unique.py