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Clarify how to replace setGlobals as of v1.0.0 #134

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Merged
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Feb 16, 2024
Merged

Clarify how to replace setGlobals as of v1.0.0 #134

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Expand Up @@ -51,6 +51,8 @@
- Expanded test coverage and now using pytest for testing
- Added `pre-commit` hooks
- Call signature update and pattern update: `designPrimers` now `design_primers` integrates setting of sequence arguments and global arguments as they are coupled in `primer3_boulder_main.c`
Note `primer3.primerdesign` was removed, including `setGlobals`.
Replace `setGlobals(GLOBALS, MISPRIME, MISHYB)` and `designPrimers(SEQARGS)` with a single call `design_primers(SEQARGS, GLOBALS, MISPRIME, MISHYB)`.
- `primer3` C code bug fixes to improve compiler warnings
- Using `primer3` `read_boulder_record` to setup primer3 data structures instead of reproducing code in `primer3-py` C or Cython via a code signature update
- `drawDimer` and `drawHairpin` updates to unify sequence structure output for testing
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