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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python 1

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 13 3

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 6

Repositories

Showing 10 of 189 repositories
  • portal-visualization Public

    Given HuBMAP Dataset JSON, creates a Vitessce configuration

    hubmapconsortium/portal-visualization’s past year of commit activity
    Python 1 MIT 1 12 5 Updated Nov 18, 2025
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 6 MIT 5 129 16 Updated Nov 18, 2025
  • ingest-api Public

    HuBMAP Data Ingest API

    hubmapconsortium/ingest-api’s past year of commit activity
    Python 0 MIT 0 19 1 Updated Nov 18, 2025
  • rna-data-products Public
    hubmapconsortium/rna-data-products’s past year of commit activity
    Python 0 GPL-3.0 0 4 0 Updated Nov 18, 2025
  • hra-workflows-runner Public

    hra-workflows-runner: DCTA pipeline to download, annotate, and summarize experimental data using hra-workflows

    hubmapconsortium/hra-workflows-runner’s past year of commit activity
    JavaScript 0 MIT 1 6 2 Updated Nov 18, 2025
  • ccf-grlc Public

    ccf-grlc: Useful SPARQL queries for HRA work + API via grlc.io

    hubmapconsortium/ccf-grlc’s past year of commit activity
    JavaScript 1 MIT 1 3 0 Updated Nov 18, 2025
  • ingest-ui Public

    HuBMAP Data Ingest Portal

    hubmapconsortium/ingest-ui’s past year of commit activity
    JavaScript 4 MIT 0 81 (1 issue needs help) 2 Updated Nov 18, 2025
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 13 MIT 3 175 8 Updated Nov 18, 2025
  • scfind Public
    hubmapconsortium/scfind’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Nov 18, 2025
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools’s past year of commit activity
    Python 8 MIT 18 40 8 Updated Nov 17, 2025
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