add easyconfigs for PerfExpert, ROSE, HPCToolkit + deps

easybuild/easyconfigs/a/Autoconf/Autoconf-2.69.eb

@@ -0,0 +1,20 @@
+name = 'Autoconf'
+version = '2.69'
+
+homepage = 'http://www.gnu.org/software/autoconf/'
+description = """Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls."""
+
+toolchain = {'name': 'dummy', 'version': ''}
+
+source_urls = [GNU_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [('M4', '1.4.16')]
+
+sanity_check_paths = {
+    'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf",
+                                     "autoscan", "autoupdate", "ifnames"]],
+    'dirs': [],
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/b/Bison/Bison-3.0.2.eb

@@ -0,0 +1,20 @@
+name = 'Bison'
+version = '3.0.2'
+
+homepage = 'http://www.gnu.org/software/bison'
+description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar
+into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables."""
+
+toolchain = {'name': 'dummy', 'version': ''}
+
+sources = [SOURCELOWER_TAR_GZ]
+source_urls = [GNU_SOURCE]
+
+builddependencies = [('M4', '1.4.17')]
+
+sanity_check_paths = {
+    'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"],
+    'dirs': [],
+}
+
+moduleclass = 'lang'

easybuild/easyconfigs/b/Boost/Boost-1.47.0.eb

@@ -0,0 +1,21 @@
+name = 'Boost'
+version = '1.47.0'
+
+homepage = 'http://www.boost.org/'
+description = """Boost provides free peer-reviewed portable C++ source libraries."""
+
+toolchain = {'name': 'dummy', 'version': ''}
+toolchainopts = {'pic': True}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))]
+
+dependencies = [('bzip2', '1.0.6')]
+
+configopts = '--without-libraries=python'
+
+toolset = 'gcc'
+
+osdependencies = ['zlib-devel']
+
+moduleclass = 'devel'

easybuild/easyconfigs/b/byacc/byacc-20140422.eb

@@ -0,0 +1,18 @@
+name = 'byacc'
+version = '20140422'
+
+homepage = 'http://invisible-island.net/byacc/byacc.html'
+description = """Berkeley Yacc (byacc) is generally conceded to be the best yacc variant available.
+In contrast to bison, it is written to avoid dependencies upon a particular compiler."""
+
+toolchain = {'name': 'dummy', 'version': 'dummy'}
+
+sources = [SOURCELOWER_TGZ]
+source_urls = ['ftp://invisible-island.net/byacc']
+
+sanity_check_paths = {
+    'files': ["bin/yacc"],
+    'dirs': [],
+}
+
+moduleclass = 'lang'

easybuild/easyconfigs/f/flex/flex-2.5.39.eb

@@ -0,0 +1,14 @@
+name = 'flex'
+version = '2.5.39'
+
+homepage = 'http://flex.sourceforge.net/'
+description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, 
+sometimes called a tokenizer, is a program which recognizes lexical patterns in text."""
+
+toolchain = {'name': 'dummy', 'version': 'dummy'}
+toolchainopts = {'pic': True}
+
+sources = [SOURCELOWER_TAR_GZ]
+source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s']
+
+moduleclass = 'lang'

easybuild/easyconfigs/g/GMP/GMP-5.0.5.eb

@@ -0,0 +1,20 @@
+name = 'GMP'
+version = '5.0.5'
+
+homepage = 'http://gmplib.org/'
+description = """GMP is a free library for arbitrary precision arithmetic, 
+operating on signed integers, rational numbers, and floating point numbers. """
+
+toolchain = {'name': 'dummy', 'version': 'dummy'}
+
+sources = [SOURCELOWER_TAR_BZ2]
+source_urls = [GNU_SOURCE]
+
+runtest = 'check'
+
+sanity_check_paths = {
+    'files': ['lib/libgmp.so', 'include/gmp.h'],
+    'dirs': [],
+}
+
+moduleclass = 'math'

easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2.eb

@@ -0,0 +1,24 @@
+name = 'google-sparsehash'
+version = '2.0.2'
+
+homepage = 'http://code.google.com/p/google-sparsehash/'
+description = """An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library
+contains several hash-map implementations, including implementations that optimize for space or speed."""
+
+toolchain = {'name': 'dummy', 'version': 'dummy'}
+toolchainopts = {'optarch': True}
+
+sources = ['%s-%s.tar.gz' % (name.split('-')[1].lower(), version)]
+source_urls = ['http://sparsehash.googlecode.com/files']
+
+runtest = "check"
+
+sanity_check_paths = {
+    'files': ['include/sparsehash/%s' % x for x in ['dense_hash_map', 'dense_hash_set', 'sparse_hash_map',
+                                                    'sparse_hash_set', 'sparsetable', 'template_util.h', 'type_traits.h'
+                                                    ]
+              ],
+    'dirs': []
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/g/guile/guile-1.8.8.eb

@@ -0,0 +1,30 @@
+name = 'guile'
+version = '1.8.8'
+
+homepage = 'http://www.gnu.org/software/guile'
+description = """Guile is the GNU Ubiquitous Intelligent Language for Extensions,
+the official extension language for the GNU operating system."""
+
+toolchain = {'name': 'dummy', 'version': ''}
+
+sources = [SOURCELOWER_TAR_GZ]
+source_urls = [GNU_SOURCE]
+
+dependencies = [
+    ('libtool', '2.4.2'),
+    ('GMP', '5.0.5'),
+    ('libunistring', '0.9.3'),
+    ('pkg-config', '0.27.1'),
+    ('libffi', '3.0.11'),
+    ('libreadline', '6.2'),
+]
+
+configopts = " --enable-error-on-warning=no"
+
+sanity_check_paths = {
+    'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] +
+             ["lib/libguile.a", "include/libguile.h"],
+    'dirs': [],
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/h/HPCToolkit/HPCToolkit-5.3.2.eb

@@ -0,0 +1,34 @@
+name = 'HPCToolkit'
+version = '5.3.2'
+
+homepage = 'http://hpctoolkit.org/'
+description = """HPCToolkit is an integrated suite of tools for measurement and analysis of program performance
+ on computers ranging from multicore desktop systems to the nation's largest supercomputers."""
+
+toolchain = {'name': 'dummy', 'version': ''}  # empty version to make sure dependencies are loaded
+
+rev = 'r4197'
+source_urls = [GOOGLECODE_SOURCE]
+sources = [
+    '%%(namelower)s-%%(version)s-%s.tar.gz' % rev,
+    '%%(namelower)s-externals-%%(version)s-%s.tar.gz' % rev,
+]
+
+dependencies = [
+    ('Boost', '1.47.0', '', True),
+    ('PAPI', '5.3.0'),
+]
+
+start_dir = "%%(builddir)s/%%(namelower)s-%%(version)s-%s" % rev
+preconfigopts = "mkdir -p %(installdir)s/externals && cp -a ../hpctoolkit-externals-*/* %(installdir)s/externals && cd %(installdir)s/externals && "
+preconfigopts += "./configure --with-boost=$EBROOTBOOST && make && cd - && "
+configopts = "--with-externals=%(installdir)s/externals --with-papi=$EBROOTPAPI"
+
+keeppreviousinstall = True
+
+sanity_check_paths = {
+    'files': ['bin/hpc%s' % x for x in ['link', 'prof', 'run', 'struct', 'summary']] + ['include/hpctoolkit.h'],
+    'dirs': ['lib/hpctoolkit'],
+}
+
+moduleclass = 'tools'

easybuild/easyconfigs/j/Java/Java-1.7.0_10.eb

@@ -12,4 +12,6 @@ toolchain = {'name': 'dummy', 'version': 'dummy'}
 altver = '%su%s' % (vp.split('.')[1], vs)
 sources = ['jdk-%s-linux-x64.tar.gz' % altver]
 
+modextrapaths = {'LD_LIBRARY_PATH': ['jre/lib/amd64/server']}  # for libjvm.so
+
 moduleclass = 'lang'

easybuild/easyconfigs/j/Java/Java-1.7.0_15.eb

@@ -12,4 +12,6 @@ toolchain = {'name': 'dummy', 'version': 'dummy'}
 altver = '%su%s' % (vp.split('.')[1], vs)
 sources = ['jdk-%s-linux-x64.tar.gz' % altver]
 
+modextrapaths = {'LD_LIBRARY_PATH': ['jre/lib/amd64/server']}  # for libjvm.so
+
 moduleclass = 'lang'

easybuild/easyconfigs/j/Java/Java-1.7.0_21.eb

@@ -12,4 +12,6 @@ toolchain = {'name': 'dummy', 'version': 'dummy'}
 altver = '%su%s' % (vp.split('.')[1], vs)
 sources = ['jdk-%s-linux-x64.tar.gz' % altver]
 
+modextrapaths = {'LD_LIBRARY_PATH': ['jre/lib/amd64/server']}  # for libjvm.so
+
 moduleclass = 'lang'

easybuild/easyconfigs/j/Java/Java-1.7.0_40.eb

@@ -12,4 +12,6 @@ toolchain = {'name': 'dummy', 'version': 'dummy'}
 altver = '%su%s' % (vp.split('.')[1], vs)
 sources = ['jdk-%s-linux-x64.tar.gz' % altver]
 
+modextrapaths = {'LD_LIBRARY_PATH': ['jre/lib/amd64/server']}  # for libjvm.so
+
 moduleclass = 'lang'

easybuild/easyconfigs/j/Java/Java-1.7.0_45.eb

@@ -12,4 +12,6 @@ toolchain = {'name': 'dummy', 'version': 'dummy'}
 altver = '%su%s' % (vp.split('.')[1], vs)
 sources = ['jdk-%s-linux-x64.tar.gz' % altver]
 
+modextrapaths = {'LD_LIBRARY_PATH': ['jre/lib/amd64/server']}  # for libjvm.so
+
 moduleclass = 'lang'

easybuild/easyconfigs/l/libffi/libffi-3.0.11.eb

@@ -0,0 +1,24 @@
+name = 'libffi'
+version = '3.0.11'
+
+homepage = 'http://sourceware.org/libffi'
+description = """The libffi library provides a portable, high level programming interface to various calling conventions.
+This allows a programmer to call any function specified by a call interface description at run-time.
+
+FFI stands for Foreign Function Interface. A foreign function interface is the popular name for the interface that
+allows code written in one language to call code written in another language."""
+
+toolchain = {'name': 'dummy', 'version': 'dummy'}
+
+source_urls = [
+    'ftp://sourceware.org/pub/libffi/',
+    'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/',
+]
+sources = [SOURCELOWER_TAR_GZ]
+
+sanity_check_paths = {
+    'files': ['lib/libffi.a'],
+    'dirs': [],
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11.eb

@@ -0,0 +1,31 @@
+name = 'libmatheval'
+version = '1.1.11'
+
+homepage = 'http://www.gnu.org/software/libmatheval/'
+description = """GNU libmatheval is a library (callable from C and Fortran) to parse
+ and evaluate symbolic expressions input as text."""
+
+source_urls = [GNU_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+toolchain = {'name': 'dummy', 'version': ''}
+toolchainopts = {'pic': True}
+
+dependencies = [
+    ('flex', '2.5.39'),
+    ('Bison', '3.0.2'),
+    ('byacc', '20140422'),
+    ('guile', '1.8.8'),
+]
+
+configopts = '--with-pic '
+
+# fix for guile-config being broken because shebang line contains full path to bin/guile
+configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"'
+
+sanity_check_paths = {
+    'files': ['lib/libmatheval.a', 'include/matheval.h'],
+    'dirs': [],
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/l/libreadline/libreadline-6.2.eb

@@ -0,0 +1,25 @@
+name = 'libreadline'
+version = '6.2'
+
+homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html'
+description = """The GNU Readline library provides a set of functions for use by applications that
+ allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available.
+ The Readline library includes additional functions to maintain a list of previously-entered command lines,
+ to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands."""
+
+toolchain = {'name': 'dummy', 'version': ''}
+toolchainopts = {'pic': True}
+
+sources = ['readline-%(version)s.tar.gz']
+source_urls = ['http://ftp.gnu.org/gnu/readline']
+
+dependencies = [('ncurses', '5.9')]
+
+sanity_check_paths = {
+    'files' : ['lib/libreadline.a', 'lib/libhistory.a'] +
+              ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h',
+                                                   'rlstdc.h', 'rltypedefs.h', 'tilde.h']],
+    'dirs' : [],
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/l/libtool/libtool-2.4.2.eb

@@ -0,0 +1,13 @@
+name = 'libtool'
+version = '2.4.2'
+
+homepage = 'http://www.gnu.org/software/libtool'
+description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries
+behind a consistent, portable interface."""
+
+toolchain = {'name': 'dummy', 'version': 'dummy'}
+
+sources = [SOURCELOWER_TAR_GZ]
+source_urls = [GNU_SOURCE]
+
+moduleclass = 'lib'

easybuild/easyconfigs/l/libunistring/libunistring-0.9.3.eb

@@ -0,0 +1,22 @@
+name = 'libunistring'
+version = '0.9.3'
+
+homepage = 'http://www.gnu.org/software/libunistring/'
+description = """This library provides functions for manipulating Unicode strings and for manipulating C strings
+according to the Unicode standard."""
+
+toolchain = {'name': 'dummy', 'version': 'dummy'}
+
+sources = [SOURCELOWER_TAR_GZ]
+source_urls = [GNU_SOURCE]
+
+parallel = 1
+
+sanity_check_paths = {
+    'files' : ['lib/libunistring.a', 'lib/libunistring.so', 'include/unistring'] +
+              ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm',
+                                               'stdio', 'str', 'types', 'wbrk', 'width']],
+    'dirs' : [],
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/l/libxml2/libxml2-2.9.1.eb

@@ -0,0 +1,23 @@
+easyblock = 'ConfigureMake'
+
+name = 'libxml2'
+version = '2.9.1'
+
+homepage = 'http://xmlsoft.org/'
+description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable
+outside of the Gnome platform)."""
+
+toolchain = {'name': 'dummy', 'version': ''}
+
+source_urls = [
+    'http://xmlsoft.org/sources/',
+    'http://xmlsoft.org/sources/old/'
+]
+sources = [SOURCELOWER_TAR_GZ]
+
+configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python'
+makeopts = 'LDFLAGS="-L$EBROOTZLIB/lib" V=1'
+
+dependencies = [('zlib', '1.2.7')]
+
+moduleclass = 'lib'