-
Notifications
You must be signed in to change notification settings - Fork 763
MaSuRCA for foss 2016a #4706
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
MaSuRCA for foss 2016a #4706
Conversation
| toolchain = {'name': 'foss', 'version': '2016a'} | ||
|
|
||
| buildopts="install-special" | ||
| start_dir="global-1" |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
please move this down, below dependencies
| start_dir="global-1" | ||
|
|
||
| #need a temporary url to download it. Do it manually. | ||
| source_urls = ['http://www.genome.umd.edu/masurca_form.html'] |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
don't specify this via source_urls, but just as a comment, there's no point in letting EasyBuild attempt a download
|
|
||
| sanity_check_paths = { | ||
| 'files': [], | ||
| 'dirs': ["bin"], |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Maybe make this a bit more specific?
sanity_check_paths = {
'files': ['bin/masurca'],
'dirs': ['include', 'lib'],
}| ('zlib', '1.2.8'), | ||
| ] | ||
|
|
||
| toolchain = {'name': 'foss', 'version': '2016a'} |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Sorry if I wasn't clear, this should stay up (above sources) style-wise...
We hope to start automatic style checks soon, including order of parameters.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Is there a document where the style required to write eb files is specified?
|
Test report by @boegel |
|
@ysagon We have this: http://easybuild.readthedocs.io/en/latest/Contributing.html#code-style-review, but it mostly applies to Python code, i.e. it doesn't formalise desired order of easyconfig parameters. There's been some work on making |
|
lgtm |
|
Test report by @boegel |
|
Going in, thanks @ysagon! |
No description provided.