{toolchain} foss/2020b #11489

boegel · 2020-10-13T19:58:07Z

(created using eb --new-pr)

Still WIP because:

maybe we should use OpenBLAS 0.3.12 rather than a patched OpenBLAS 0.3.11?
~~ScaLAPACK 2.1.0 doesn't compile with GCC 10.2~~
- fixed upstream in Fix argument mismatches for implicitly defined functions (gcc-10 compat) Reference-ScaLAPACK/scalapack#26, but this relies on building ScaLAPACK with CMake, which we're not doing currently...

requires:

updated ScaLAPACK easyblock ~~update ScaLAPACK easyblock to support installation with CMake for recent versions (>= v2.1.0) easybuild-easyblocks#2205~~

zao · 2020-10-18T12:44:27Z

Test report by @zao
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
freja - Linux Ubuntu 20.04, x86_64, Intel(R) Core(TM) i7-8700K CPU @ 3.70GHz (skylake), Python 3.8.5
See https://gist.github.com/0a1e59fadba7ce3b03e82b4679f91f5a for a full test report.

bartoldeman · 2020-10-18T17:22:04Z

Test report by @bartoldeman
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in this PR)
build-node.computecanada.ca - Linux centos linux 7.8.2003, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.7.7
See https://gist.github.com/cbc75a5143babbb14cf7a93f2cd60672 for a full test report.

branfosj · 2020-10-18T18:02:12Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0306u19a.bear.cluster - Linux RHEL 8.2, POWER, 8335-GTX (power9le), Python 3.6.8
See https://gist.github.com/f2a7d5aafe02a785b09215796e73f5f5 for a full test report.

branfosj · 2020-10-18T18:03:26Z

Test report by @branfosj
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
bear-pg0211u03a.bear.cluster - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/3330cb6c8edba715604e49f8b2300f40 for a full test report.

boegel · 2020-10-19T16:23:42Z

@boegelbot please test @ generoso
EB_ARGS="--include-easyblocks-from-pr 2205"

boegelbot · 2020-10-19T16:25:08Z

@boegel: Request for testing this PR well received on generoso

PR test command 'EB_PR=11489 EB_ARGS="--include-easyblocks-from-pr 2205" /apps/slurm/default/bin/sbatch --job-name test_PR_11489 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 8172

Test results coming soon (I hope)...

- notification for comment with ID 712280180 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2020-10-19T17:00:59Z

Test report by @boegelbot
Using easyblocks from easybuilders/easybuild-easyblocks#2205
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
generoso-x-2 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/2f8c925d6e08d4f76e9be175df51dbf8 for a full test report.

boegel · 2020-10-19T17:05:19Z

Test report by @boegel
Using easyblocks from easybuilders/easybuild-easyblocks#2205
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
node3408.kirlia.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz (cascadelake), Python 2.7.5
See https://gist.github.com/0be2d3306f7784edc220aba20083e9fa for a full test report.

boegel · 2020-10-19T17:29:53Z

Test report by @boegel
Using easyblocks from easybuilders/easybuild-easyblocks#2205
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
node2427.golett.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz (haswell), Python 2.7.5
See https://gist.github.com/8d9d5a2805481bd765d78c601b6a8529 for a full test report.

zao · 2020-10-19T22:55:31Z

Test report by @zao
Using easyblocks from easybuilders/easybuild-easyblocks#2205
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
freja - Linux Ubuntu 20.04, x86_64, Intel(R) Core(TM) i7-8700K CPU @ 3.70GHz (skylake), Python 3.8.5
See https://gist.github.com/12dd7c982ec5e3dc487cd3f62ef1a98e for a full test report.

verdurin · 2020-10-20T22:13:45Z

Test report by @verdurin
SUCCESS
Build succeeded for 27 out of 27 (6 easyconfigs in this PR)
nuc.lan - Linux Fedora 32, x86_64, Intel(R) Core(TM) i7-8650U CPU @ 1.90GHz, Python 3.8.6
See https://gist.github.com/dadb1eaab13f1ac62badb0fc168ee0a2 for a full test report.

zao · 2020-10-21T08:52:42Z

Test report by @zao
FAILED
Build succeeded for 29 out of 32 (6 easyconfigs in this PR)
b-cn1203.hpc2n.umu.se - Linux ubuntu 16.04, x86_64, Intel(R) Xeon Phi(TM) CPU 7250 @ 1.40GHz, Python 2.7.12
See https://gist.github.com/9143cfcd091f8a341f652a8c160b3ba2 for a full test report.

zao · 2020-10-21T11:44:29Z

Test report by @zao
SUCCESS
Build succeeded for 3 out of 3 (6 easyconfigs in this PR)
b-cn1203.hpc2n.umu.se - Linux ubuntu 16.04, x86_64, Intel(R) Xeon Phi(TM) CPU 7250 @ 1.40GHz, Python 2.7.12
See https://gist.github.com/c87765f7b28154e510b92bf0329865b8 for a full test report.

zao · 2020-10-21T11:55:05Z

KNL test report made in two parts due to easybuilders/easybuild-framework#3476, please consider my two test reports as a cumulative success.

bartoldeman · 2020-10-21T16:12:49Z

Test report by @bartoldeman
SUCCESS
Build succeeded for 11 out of 11 (6 easyconfigs in this PR)
build-node.computecanada.ca - Linux centos linux 7.8.2003, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.7.7
See https://gist.github.com/baea9a90ca04cf97b6296e817fb35d65 for a full test report.

branfosj · 2020-10-21T18:40:49Z

Test report by @branfosj
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
bear-pg0206u16a.bear.cluster - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/0b61d22791f7b81dba570cdee7009936 for a full test report.

Error is

cmake: /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/XZ/5.2.5-GCCcore-10.2.0/lib/liblzma.so.5: version `XZ_5.2' not found (required by /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/libarchive/3.4.3-GCCcore-10.2.0/lib/libarchive.so.13)

branfosj · 2020-10-22T08:30:04Z

Test report by @branfosj
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
bear-pg0306u19a.bear.cluster - Linux RHEL 8.2, POWER, 8335-GTX (power9le), Python 3.6.8
See https://gist.github.com/21c13f827a274d8cdba194231ec98ede for a full test report.

branfosj · 2020-10-22T08:39:47Z

Test report by @branfosj
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
bear-pg0206u16a.bear.cluster - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/fc5a15837feef5b1289c3fa2dfdf731d for a full test report.

migueldiascosta · 2020-10-25T03:48:23Z

Test report by @migueldiascosta
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#2191, easybuilders/easybuild-easyblocks#2205
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
sms - Linux centos linux 7.6.1810, x86_64, AMD EPYC 7601 32-Core Processor (zen), Python 2.7.5
See https://gist.github.com/4ea1c3e307c8d8abda9f990d939f2bd5 for a full test report.

bartoldeman · 2020-10-25T14:49:34Z

Test report by @bartoldeman
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in this PR)
build-node.computecanada.ca - Linux centos linux 7.8.2003, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.7.7
See https://gist.github.com/56b9efa0e5967c7468ab06a59d6266f5 for a full test report.

verdurin · 2020-11-02T15:08:21Z

@boegel what are we waiting for on this one?

Micket · 2020-11-05T13:39:25Z

Test report by @Micket
SUCCESS
Build succeeded for 10 out of 10 (6 easyconfigs in total)
vera-c1 - Linux centos linux 7.8.2003, x86_64, Intel Xeon Processor (Skylake), Python 2.7.5
See https://gist.github.com/cfecf95db4e7efe5ab99b594761d0caf for a full test report.

boegel · 2020-11-06T21:41:26Z

@boegel what are we waiting for on this one?

Testing stuff on top. I was doing that with OpenFOAM 8 today, works fine.

Also tried CP2K 7.1, ran into problems with Libint:

python c_to_f.py ../include/libint2.h.i libint2_types_f.h Libint_t
grep '^#' ../include/libint2_types.h | grep -v '#include' > fortran_incldefs.h
FC libint_f.o
../include/libint2/util/generated/libint2_params.h:29:0:
   29 | #    if __has_include(<libint2_params.h>)
      |                                                                                                                                                                                                     Error: missing '(' before "__has_include" operand                                                                                                                                                           ../include/libint2/util/generated/libint2_params.h:29:0: Error: operator "__has_include" requires a header-name
make[1]: *** [../MakeSuffixRules:12: libint_f.o] Error 1

That doesn't need to be a blocker though, but it would be nice to have some confirmation about the Fortran aspect of foss/2020b too, so maybe via WRF?

boegel · 2020-11-08T09:33:31Z

Libint issue is fixed with patch for GCC 10.2, see #11627

CP2K 7.1 with foss/2020b requires using -fallow-argument-mismatch, see fix in CP2K easyblock @ easybuilders/easybuild-easyblocks#2223

Similarly building WRF 3.9.1.1 requires both -fallow-argument-mismatch and -fallow-invalid-boz, see wrf-model/WRF#1250, which is easy to fix with a patch.

verdurin · 2020-11-08T11:07:11Z

Test report by @verdurin
SUCCESS
Build succeeded for 1 out of 1 (6 easyconfigs in total)
nuc.lan - Linux Fedora 32, x86_64, Intel(R) Core(TM) i7-8650U CPU @ 1.90GHz, Python 3.8.6
See https://gist.github.com/cc7bacd81289b781449e01160131cbb4 for a full test report.

boegel · 2020-11-08T14:24:34Z

Test report by @boegel
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
node3108.skitty.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/876ebf76c9c69039c64ce042fceffec0 for a full test report.

Micket · 2020-11-08T20:18:44Z

Test report by @Micket
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
vera-c1 - Linux centos linux 7.8.2003, x86_64, Intel Xeon Processor (Skylake), Python 2.7.5
See https://gist.github.com/61aac51f05062cae63521389a0ecc34d for a full test report.

Micket

lgtm

Micket · 2020-11-08T21:42:20Z

Going in, thanks @boegel!

boegel · 2020-11-09T14:52:25Z

Test report by @boegel
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
easybuild1.novalocal - Linux centos linux 8.2.2004, POWER, IBM pSeries (emulated by qemu) (power8le), Python 3.6.8
See https://gist.github.com/c61f1c99b83a04b7c207ac90820eb223 for a full test report.

boegel added the update label Oct 13, 2020

boegel added this to the next release (4.3.1) milestone Oct 13, 2020

Micket added the 2020b issues & PRs related to 2020b label Oct 13, 2020

boegel force-pushed the 20201013215757_new_pr_HPL23 branch from 8318aee to c63fa59 Compare October 13, 2020 20:23

easybuilders deleted a comment from boegelbot Oct 13, 2020

{toolchain} foss/2020b (WIP)

ae8562d

boegel force-pushed the 20201013215757_new_pr_HPL23 branch from c63fa59 to ae8562d Compare October 13, 2020 20:44

boegel added 2 commits October 18, 2020 14:33

update to OpenBLAS 0.3.11 as foss/2020b component

3194041

Merge branch 'develop' into 20201013215757_new_pr_HPL23

e5d45a0

boegel mentioned this pull request Oct 19, 2020

update ScaLAPACK easyblock to support installation with CMake for recent versions (>= v2.1.0) easybuilders/easybuild-easyblocks#2205

Merged

boegel added 2 commits October 19, 2020 12:13

add CMake build dep for ScaLAPACK 2.1.0 built with gompi/2020b

504c5ea

add patch for OpenBLAS 0.3.11 to fix test failure on Skylake X

eb8764d

add patch for OpenBLAS v0.3.11 to fix failing tests on KNL

f022e6f

easybuilders deleted a comment from boegelbot Oct 20, 2020

zao mentioned this pull request Oct 21, 2020

include-easyblocks-from-pr only supports a single PR for additional easyblocks easybuilders/easybuild-framework#3476

Closed

branfosj mentioned this pull request Oct 21, 2020

add XZ build dependency for libarchive 3.4.3 #11556

Merged

update OpenBLAS component for foss/2020a to version 0.3.12

7d25177

migueldiascosta mentioned this pull request Oct 25, 2020

take into account multiple easyblock PRs when uploading test reports easybuilders/easybuild-framework#3481

Merged

boegel modified the milestones: 4.3.1 (next release), 4.3.2 Oct 26, 2020

boegel mentioned this pull request Nov 8, 2020

{lang}[foss/2020b,intel/2020b] SciPy-bundle v2020.11 w/ Python 3.8.6 #11629

Merged

boegel changed the title ~~{toolchain} foss/2020b (WIP)~~ {toolchain} foss/2020b Nov 8, 2020

Micket approved these changes Nov 8, 2020

View reviewed changes

Micket merged commit f3fbdbe into easybuilders:develop Nov 8, 2020

boegel deleted the 20201013215757_new_pr_HPL23 branch November 9, 2020 07:54

boegel mentioned this pull request Nov 11, 2020

{system}[system/system] CUDA v11.1.1, CUDAcore v11.1.1, gcccuda v2020b #11612

Merged

boegel mentioned this pull request Dec 8, 2020

Use OpenBLAS 0.3.11 in 2020b toolchain #11420

Closed

{toolchain} foss/2020b #11489

{toolchain} foss/2020b #11489

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