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ee787ea
Merge pull request #514 from cmu-delphi/bot/sync-main-dev
sgratzl Nov 23, 2021
3bc2512
ci: use node 16
sgratzl Nov 23, 2021
016493b
build: update deps
sgratzl Nov 23, 2021
54a2688
build: fix ignore file
sgratzl Nov 23, 2021
1287604
Merge pull request #515 from cmu-delphi/sgratzl/deps
sgratzl Nov 29, 2021
18da16c
Create 2021_11_22_nyt.md
christymelucci Dec 6, 2021
4937e98
Add photo of Bryan Wilder
christymelucci Dec 6, 2021
645136b
Add photo of Jerzy Wieczorek
christymelucci Dec 6, 2021
751d648
Delete bryan-wilder2.jpg
christymelucci Dec 6, 2021
f3bca1f
Add new photo of Bryan Wilder
christymelucci Dec 6, 2021
c880156
Add Bryan Wilder and Jerzy Wiecxorek
christymelucci Dec 6, 2021
6c3a8f6
Remove comma
christymelucci Dec 6, 2021
05e9cd1
Update photo of Bryan Wilder
christymelucci Dec 6, 2021
1ccd4f2
Add Jerzy to Contributors
christymelucci Dec 6, 2021
c584c7f
Merge pull request #522 from cmu-delphi/cmelucci/update-team-page
christymelucci Dec 7, 2021
70536cc
Merge pull request #520 from cmu-delphi/cmelucci/nyt-article
christymelucci Dec 7, 2021
8eccc3a
Cite our new PNAS paper about CTIS
capnrefsmmat Dec 14, 2021
9a9217f
Add new links, including to our PNAS indicators paper
capnrefsmmat Dec 14, 2021
7829948
feat: update to COVIDcast v3.0.0
krivard Dec 14, 2021
6bcfdf1
Merge pull request #531 from cmu-delphi/surveys/pnas
krivard Dec 14, 2021
6c8d396
Merge pull request #532 from cmu-delphi/bot/update-covidcast
krivard Dec 14, 2021
1adf426
chore: release v3.0.0
krivard Dec 14, 2021
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8 changes: 4 additions & 4 deletions .github/workflows/blog.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -45,7 +45,7 @@ jobs:
run: |
Rscript ./dependencies.R
- name: Restore Blogdown Cache
uses: actions/cache@v2.1.6
uses: actions/cache@v2
with:
path: |
./blogdown
Expand All @@ -65,10 +65,10 @@ jobs:
./content/blog
./static/blog

- uses: actions/setup-node@v2.4.1
- uses: actions/setup-node@v2
with:
node-version: "12"
- uses: actions/cache@v2.1.6
node-version: 16
- uses: actions/cache@v2
with:
path: ~/.npm
key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
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6 changes: 3 additions & 3 deletions .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -11,10 +11,10 @@ jobs:
# submodules: true # Fetch Hugo themes (true OR recursive)
fetch-depth: 3 # Fetch all history for .GitInfo and .Lastmod

- uses: actions/setup-node@v2.4.1
- uses: actions/setup-node@v2
with:
node-version: "14"
- uses: actions/cache@v2.1.6
node-version: 16
- uses: actions/cache@v2
with:
path: ~/.npm
key: ${{ runner.os }}-node3-${{ hashFiles('**/package-lock.json') }}
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10 changes: 5 additions & 5 deletions .github/workflows/release_main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -18,9 +18,9 @@ jobs:
steps:
- name: Check out code
uses: actions/checkout@v2
- uses: actions/setup-node@v2.4.1
- uses: actions/setup-node@v2
with:
node-version: "14"
node-version: 16
- name: Extract version
id: extract_version
run: node -pe "'::set-output name=version::' + require('./package.json').version"
Expand All @@ -43,11 +43,11 @@ jobs:
steps:
- name: Check out code
uses: actions/checkout@v2
- uses: actions/setup-node@v2.4.1
- uses: actions/setup-node@v2
with:
node-version: "14"
node-version: 16
- name: Cache Node.js modules
uses: actions/cache@v2.1.6
uses: actions/cache@v2
with:
path: ~/.npm # npm cache files are stored in `~/.npm` on Linux/macOS
key: ${{ runner.OS }}-node2-${{ hashFiles('**/package-lock.json') }}
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -15,3 +15,4 @@
*.tgz
.Rhistory
*.log
*.lock
7 changes: 7 additions & 0 deletions content/about/news/headless/2021_11_22_nyt.md
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@@ -0,0 +1,7 @@
---
date: 2021-11-22
title: Delphi PI Featured in New York Times
category: update
---

The New York Times featured Delphi PI, Roni Rosenfeld, in the article [Inside the C.D.C.’s Pandemic ‘Weather Service’](https://www.nytimes.com/2021/11/22/magazine/cdc-pandemic-prediction.html).
6 changes: 3 additions & 3 deletions content/covid19/_index.md
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@ linkTitle: COVID-19
layout: single
---

In March 2020, Delphi pivoted from seasonal epidemic forecasting to COVID-19 tracking. Since then, we’ve created and maintained the nation’s largest public repository of diverse, geographically-detailed, real-time indicators of COVID-19 activity in the U.S. Our indicators cover every rung of the severity pyramid, and are freely available through our public API or our data export tool.
In March 2020, Delphi pivoted from seasonal epidemic forecasting to COVID-19 tracking. Since then, we’ve created and maintained the nation’s largest public repository of diverse, geographically-detailed, real-time indicators of COVID-19 activity in the U.S. Our indicators cover every rung of the severity pyramid, and are freely available through [our public API]({{< apiref "api/covidcast.html" >}}) or our [data export tool]({{< relref "covidcast/export" >}}).

Several of the underlying data sources (on which these indicators are built) would not exist or be publicly available without our efforts. This includes:

* A massive national daily survey we’re running in partnership with Facebook. Over 20 million Americans have answered the survey since April 2020, providing real-time insights into, e.g., self-reported symptoms, mask wearing, testing, and contacts, all broken down by various demographics.
* A [massive national daily survey]({{< relref "covid19/ctis" >}}) we’re running in partnership with Facebook. Over 20 million Americans have answered the survey since April 2020, providing real-time insights into, e.g., self-reported symptoms, mask wearing, testing, and contacts, all broken down by various demographics.
* An enormous database of medical insurance claims that have been de-identified in accordance with HIPAA privacy regulations, covering more than half the US population, made possible through health system partners including Change Healthcare. We use this to produce a new syndromic COVID-19 indicator based on doctor visits, and other indicators based on hospitalizations and ICU admissions.

We have selected a small number of indicators to showcase in COVIDcast, a visualization system that helps place pandemic activity in geographic and temporal context. It includes a notion of correlation across time, for example, a spike in cases is often followed by a spike in hospital admissions some number of days later.
An overview of our work and data was [published in the *Proceedings of the National Academy of Sciences*](https://doi.org/10.1073/pnas.2111452118). We have selected a small number of indicators to showcase in [COVIDcast]({{< relref "covidcast" >}}), a visualization system that helps place pandemic activity in geographic and temporal context. It includes a notion of correlation across time, for example, a spike in cases is often followed by a spike in hospital admissions some number of days later.
7 changes: 7 additions & 0 deletions content/covid19/ctis.md
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Expand Up @@ -58,6 +58,13 @@ The [Symptom Data Challenge](https://www.symptomchallenge.org/) challenged parti

### Publications

- J. Salomon, A. Reinhart, A. Bilinski, E. J. Chua, W. La Motte-Kerr, M. M.
Rönn, M. B. Reitsma, K. A. Morris, S. LaRocca, T. H. Farag, F. Kreuter, R.
Rosenfeld, and R. J. Tibshirani (2021). [The US COVID-19 Trends and Impact
Survey: Continuous real-time measurement of COVID-19 symptoms, risks,
protective behaviors, testing, and
vaccination](https://doi.org/10.1073/pnas.2111454118). *Proceedings of the
National Academy of Sciences* 118 (51) e2111454118.
- D. P. Do and R. Frank (2021). [U.S. frontline workers and COVID-19 inequities](https://doi.org/10.1016/j.ypmed.2021.106833). *Preventive Medicine* 153, 106833.
- W. C. King, M. Rubinstein, A. Reinhart, and R. J. Mejia (2021). [COVID-19 vaccine hesitancy January-May 2021 among 18–64 year old US adults by employment and occupation](https://doi.org/10.1016/j.pmedr.2021.101569). *Preventive Medicine Reports* 24, 101569.
- C. H. Sudre, A. Keshet, M. S. Graham, A. D. Joshi, S. Shilo, H. Rossman, B. Murray, E. Molteni, K. Klaser, L. D. Canas, M. Antonelli, L. H. Nguyen, D. A. Drew, M. Modat, J. Capdevila Pujol, S. Ganesh, J. Wolf, T. Meir, A. T. Chan, C. J. Steves, T. D. Spector, J. S. Brownstein, E. Segal, S. Ourselin, and C. M. Astley (2021). [Anosmia, ageusia, and other COVID-19-like symptoms in association with a positive SARS-CoV-2 test, across six national digital surveillance platforms: an observational study](https://doi.org/10.1016/S2589-7500(21)00115-1). *The Lancet Digital Health* 3 (9), e577-e586.
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12 changes: 12 additions & 0 deletions content/people/index.md
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Expand Up @@ -787,6 +787,18 @@ people:
external: true
team:
- blog
- firstName: Jerzy
lastName: Wieczorek
image: jerzy-wieczorek.jpg
affiliation: Colby College
team:
- contributors
- firstName: Bryan
lastName: Wilder
image: bryan-wilder.jpg
affiliation: CMU/MLD
team:
- core

others: |
MLD administrator Alison Chiocchi; CMU’s wonderful Communications, IT, Legal, OSP, and IRB teams, including Scott Ambrose, Amber Becker, Stacey Becker, Amanda Berneburg, Susan Brunner, Steve Chabassol, Cindy Chepanoske, Ethan Connor, Amy Coutu, John Dermott, Ed Garbade, Greg Gillotti, Akshaya Gupta, Scott Haas, Ryan Jackson, Rasha Kolia, Chris Kornell, Jason Maderer, Dave McMurtrie, Craig Miron, Roman Mitz, Matt Nagel, Allie Oswell, John Porco, Mark Power, Laura Raderman, Teri Reiche, Bob Rittiger, Edem Setodji, Jennifer Smith, Steve Snodgrass, Julia Sobol Dzurino, Byron Spice, Dom Travisano, Alex Visbisky, and Walter Wong; and the entire CMU senior leadership team.
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