Release v2.4.0

.github/dependabot.yml

@@ -0,0 +1,14 @@
+version: 2
+updates:
+  # Maintain dependencies for GitHub Actions
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    target-branch: dev
+    schedule:
+      interval: "weekly"
+  # Maintain dependencies for npm
+  - package-ecosystem: "npm"
+    directory: "/"
+    target-branch: dev
+    schedule:
+      interval: "weekly"

.github/release-drafter.yml

@@ -19,6 +19,7 @@ categories:
     labels:
       - "chore"
       - "documentation"
+      - "dependencies"
 change-template: "- #$NUMBER $TITLE"
 change-title-escapes: '\<*_&`#@'
 template: |

.github/workflows/blog.yaml

@@ -16,7 +16,7 @@ jobs:
           # submodules: true  # Fetch Hugo themes (true OR recursive)
           fetch-depth: 3
       - name: Cache Conda
-        uses: actions/cache@v1
+        uses: actions/cache@v2.1.5
         with:
           path: ~/conda_pkgs_dir
           key: ${{ runner.os }}-conda6-${{ hashFiles('environment.yml') }}
@@ -42,7 +42,7 @@ jobs:
         run: |
           Rscript ./dependencies.R
       - name: Restore Blogdown Cache
-        uses: actions/cache@v2
+        uses: actions/cache@v2.1.5
         with:
           path: |
             ./blogdown
@@ -62,10 +62,10 @@ jobs:
             ./content/blog
             ./static/blog
 
-      - uses: actions/setup-node@v1
+      - uses: actions/setup-node@v2.1.5
         with:
           node-version: "12"
-      - uses: actions/cache@v2
+      - uses: actions/cache@v2.1.5
         with:
           path: ~/.npm
           key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}

.github/workflows/ci.yaml

@@ -14,7 +14,7 @@ jobs:
       - uses: actions/[email protected]
         with:
           node-version: "14"
-      - uses: actions/cache@v2
+      - uses: actions/cache@v2.1.5
         with:
           path: ~/.npm
           key: ${{ runner.os }}-node3-${{ hashFiles('**/package-lock.json') }}

.github/workflows/release_main.yml

@@ -18,7 +18,7 @@ jobs:
     steps:
       - name: Check out code
         uses: actions/checkout@v2
-      - uses: actions/setup-node@v2
+      - uses: actions/setup-node@v2.1.5
         with:
           node-version: "14"
       - name: Extract version
@@ -43,11 +43,11 @@ jobs:
     steps:
       - name: Check out code
         uses: actions/checkout@v2
-      - uses: actions/setup-node@v2
+      - uses: actions/setup-node@v2.1.5
         with:
           node-version: "14"
       - name: Cache Node.js modules
-        uses: actions/cache@v2
+        uses: actions/cache@v2.1.5
         with:
           path: ~/.npm # npm cache files are stored in `~/.npm` on Linux/macOS
           key: ${{ runner.OS }}-node2-${{ hashFiles('**/package-lock.json') }}

.prettierignore

@@ -28,6 +28,7 @@
 *.Rmd
 *.md
 *.jpeg
+*.csv
 *.ico
 *.bib
 *.xcf

config.toml

@@ -25,6 +25,11 @@ relativeURLs = false
     name = "Team"
     url = "/about/team"
     weight = 2
+[[menu.main]]
+    parent = "about"
+    name = "Center of Excellence"
+    url = "/about/center-of-excellence"
+    weight = 3
 [[menu.main]]
     parent = "about"
     name = "Publications"

content/about/_index.md

@@ -32,7 +32,7 @@ Public health authorities (federal, state, local), the healthcare industry, the
 
 ### Delphi's milestones
 
-- Since 2013, we've supported U.S. CDC's Influenza Division in advancing and growing a [scientific community around flu forecasting](https://www.cdc.gov/flu/weekly/flusight/index.html). We've been perennial leaders in forecasting accuracy.
+- Since 2013, we've supported U.S. CDC's Influenza Division in advancing and growing a [scientific community around flu forecasting](https://www.cdc.gov/flu/weekly/flusight/index.html). We've been [perennial leaders in forecasting accuracy](https://www.cs.cmu.edu/~roni/CDC%20Flu%20Challenge%202014-2018%20Results.pdf).
 
 - Since 2016, we've developed the [Delphi Epidata API]({{< apiref "/" >}}), which provides real-time access to epidemiological surveillance data.
 

content/about/center-of-excellence/index.md

@@ -0,0 +1,56 @@
+---
+title: Delphi National Center of Excellence for Epidemic Forecasting
+layout: coe
+members:
+- name: Carnegie Mellon University
+  group: DELPHI Research Group
+  link: /
+  location: Pittsburgh, Pennsylvania, United States
+  pi:
+   - ryan # people keys
+   - roni
+- name: Carnegie Mellon University
+  group: EPP
+  link: https://www.cmu.edu/epp
+  location: Pittsburgh, Pennsylvania, United States
+  pi:
+    - fischhoff
+- name: University of Pittsburgh
+  group: GSPH
+  link: https://publichealth.pitt.edu/
+  location: Pittsburgh, Pennsylvania, United States
+  pi:
+    - burke
+    - panhuis
+- name: Harvard University
+  group: CCDD
+  link: https://www.hsph.harvard.edu/
+  location: Cambridge, Massachusetts, United States
+  pi:
+    - lipsitch
+
+sisters:
+- name: CDC's Influence Division
+  description: Our funders and collaborators at the [CDC's Influenza Division](https://www.cdc.gov/ncird/flu.html), specially the Influenza Applied Research & Modeling team at the [Epidemiology and Prevention branch](https://www.cdc.gov/hiv/dhap/eb/index.html).
+  link: https://www.cdc.gov/ncird/flu.html
+  img: logos/cdc.png
+- name: University of Massachusetts Amherst
+  description: Our sister organization, the [Influenza Forecasting Center of Excellence at UMass Amherst](https://reichlab.io/).
+  link: https://reichlab.io/
+  img: logos/reichlab.png
+
+supporters:
+- Allegheny County Dept of Health
+- Change Healthcare
+- DTRA
+- Facebook
+- Kaiser Permanente Washington Health Research Institute
+- Massachusetts Dept of Public Health
+- Microsoft Azure
+- Pennsylvania Dept. of Health
+- Quidel Inc.
+- UnitedHealth / Optum
+- UPMC
+---
+
+The Delphi National Center of Excellence for Influenza Forecasting was established in 2019. It is a CDC funded and CDC-designated center working on advancing influenza forecasting, and enabling and improving the usefulness of forecasts of both seasonal and pandemic influenza. During the 2020 pandemic, the center expanded to include real-time tracking ("nowcasting") and forecasting of COVID-19, giving rise to the COVIDcast project.  Our goal is to inform public health responses and policy development at the national, state and local levels. Another goal is to inform and empower the general public, providing trustworthy information and reliable short term forecasts that increase the credibility of and trust in public health authorities.

content/about/news/headless/2016_12.md

@@ -4,4 +4,4 @@ title: Top
 category: accomplishment
 ---
 
-[system took the top spot in the 2015-2016 flu forecasting challenge](https://www.cdc.gov/flu/spotlights/flu-activity-forecasts-2016-2017.htm). ([Results summary](http://www.cs.cmu.edu/~roni/CDC%20Flu%20Challenge%202015-2016%20Results.pdf).)
+[system took the top spot in the 2015-2016 flu forecasting challenge](https://www.cdc.gov/flu/spotlights/flu-activity-forecasts-2016-2017.htm). ([Results summary](https://www.cs.cmu.edu/~roni/CDC%20Flu%20Challenge%202015-2016%20Results.pdf).)

content/about/news/headless/2017_10.md

@@ -7,4 +7,4 @@ category: accomplishment
 We did it again! [Our
 two systems took the top two spots in the 2016-2017 flu forecasting
 challenge (out of 28 submissions).](https://www.cmu.edu/news/stories/archives/2017/september/flu-forecasts.html)
-([Results summary](http://www.cs.cmu.edu/~roni/CDC%20Flu%20Challenge%202016-2017%20Results.pdf).)
+([Results summary](https://www.cs.cmu.edu/~roni/CDC%20Flu%20Challenge%202016-2017%20Results.pdf).)

content/about/news/headless/2018_11.md

@@ -7,4 +7,4 @@ category: accomplishment
 and yet again! Our forecasting systems took the top
 spot each of the three separate flu forecasting challenges of
 2017-2018 (out of up to 30 submissions).
-([Results summary](http://www.cs.cmu.edu/~roni/CDC%20Flu%20Challenge%202017-2018%20Results.pdf).)
+([Results summary](https://www.cs.cmu.edu/~roni/CDC%20Flu%20Challenge%202017-2018%20Results.pdf).)

content/about/publications/index.md

@@ -46,13 +46,13 @@ papers:
   - title: "Predicting the predictable"
     image: predicting.jpg
     authors: Rosenfeld
-    link: https://delphi.cmu.edu/files/PredictingThePredictable_13-04-03.pdf
+    link: https://www.cmu.edu/delphi-web/publications/PredictingThePredictable_13-04-03.pdf
     journal: presentation
     year: 2013
   - title: "A proposal for standardized evaluation of epidemiological models"
     image: evaluation.jpg
     authors: Rosenfeld, Grefenstette, Burke
-    link: http://www.cs.cmu.edu/~roni/standardized-evaluation-of-epi-models-rev-09nov2012.pdf
+    link: https://www.cs.cmu.edu/~roni/standardized-evaluation-of-epi-models-rev-09nov2012.pdf
     journal: White paper
     year: 2012
 ---

content/about/team/index.md

@@ -11,14 +11,6 @@ layout: team
 
 {{<team team="core" >}}
 
-## Google Fellows
-
-{{<team team="google" >}}
-
-## Contractors
-
-{{<team team="contractors" >}}
-
 ## Advisors
 
 {{<team team="advisors" >}}
@@ -27,6 +19,10 @@ layout: team
 
 {{<team team="contributors" >}}
 
+## Past Google Fellows
+
+{{<team team="google" >}}
+
 ## Past Members
 
 {{<team team="past" >}}

content/blog/2021-03-10_c2b.Rmd

@@ -16,7 +16,7 @@ heroImageThumb: /blog/images/blog-thumb-c2b-1.jpg # size: 300x200 jpg and webp f
 # related:
 summary: |
   In our partnership with the Allegheny County Health Department,
-  we explored avariety of solutions to different pressing challenges
+  we explored a variety of solutions to different pressing challenges
   during the pandemic. Cases2Beds was one such tool that came as a
   result of rising COVID cases in Allegheny County.