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biocore

Collaboratively developed bioinformatics software.

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Cyberspace
http://biocore.github.io/

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gneiss gneiss Public

compositional data analysis toolbox

Jupyter Notebook 60 27

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Showing 10 of 91 repositories

kl-metapool Public
Jupyter notebooks to assist with sample processing

biocore/kl-metapool’s past year of commit activity

Python 9 MIT 20 56 (2 issues need help) 5 Updated Nov 21, 2025
microsetta-private-api Public
A private microservice to support The Microsetta Initiative

biocore/microsetta-private-api’s past year of commit activity

Python 6 BSD-3-Clause 19 63 1 Updated Nov 18, 2025
unifrac-binaries Public

biocore/unifrac-binaries’s past year of commit activity

C++ 2 BSD-3-Clause 9 3 0 Updated Nov 4, 2025
gemelli Public
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

biocore/gemelli’s past year of commit activity

Python 85 BSD-3-Clause 19 35 3 Updated Nov 3, 2025
microsetta-interface Public
The Microsetta participant facing user interface

biocore/microsetta-interface’s past year of commit activity

Jinja 1 BSD-3-Clause 17 44 4 Updated Oct 27, 2025
biom-format Public
The Biological Observation Matrix (BIOM) Format Project

biocore/biom-format’s past year of commit activity

Python 95 93 24 3 Updated Oct 27, 2025
pysyndna Public
Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022

biocore/pysyndna’s past year of commit activity

Python 0 0 0 0 Updated Oct 13, 2025
emperor Public
Emperor a tool for the analysis and visualization of large microbial ecology datasets

biocore/emperor’s past year of commit activity

JavaScript 54 48 62 3 Updated Oct 13, 2025
micov Public
Aggregate genome coverage

biocore/micov’s past year of commit activity

Python 10 6 12 1 Updated Oct 12, 2025
unifrac Public

biocore/unifrac’s past year of commit activity

Python 41 BSD-3-Clause 17 10 0 Updated Oct 10, 2025

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