[FIX] Run codespell 2.4.0 throughout fixing few left typos automagically

[yarikoptic]

CI started to error out codespell as I saw in #2032 and it is due to new codespell 2.4.0.

So this PR fixes those detected with codespell 2.4.0 and indeed we had inconsistencies on GB vs US forms for "localization" so it is harmonized now.

I have done HEP exclusion via regex which might slow things down but would keep it case specific

[DimitriPapadopoulos]

• Don't need both acknowledgements and Acknowledgements.
• Also manuel has been removed from the main dictionary (codespell-project/codespell#3204).

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 82.45%. Comparing base (4218b87) to head (0acda91).
Report is 144 commits behind head on master.

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #2033   +/-   ##
=======================================
  Coverage   82.45%   82.45%           
=======================================
  Files          17       17           
  Lines        1499     1499           
=======================================
  Hits         1236     1236           
  Misses        263      263           

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