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@bcgsc

BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

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  1. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 109 9

  2. LongStitch LongStitch Public

    🪡Correct and scaffold assemblies using long reads

    Makefile 55 8

  3. ntRoot ntRoot Public

    🌳 Human ancestry inference from genomic data

    Python 6

  4. btllib btllib Public

    📚Bioinformatics Technology Lab common code library

    C++ 25 6

  5. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 70 9

  6. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 41 2

Repositories

Showing 10 of 121 repositories
  • pori_ipr_client Public

    Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI

    bcgsc/pori_ipr_client’s past year of commit activity
    TypeScript 8 GPL-3.0 1 0 4 Updated Sep 15, 2025
  • AMPSeek Public

    Anti-microbial property, protein structure and toxicity detection from peptide sequences

    bcgsc/AMPSeek’s past year of commit activity
    Python 0 0 0 0 Updated Sep 11, 2025
  • pori_python Public
    bcgsc/pori_python’s past year of commit activity
    Python 0 GPL-3.0 2 2 2 Updated Sep 11, 2025
  • pori_graphkb_loader Public

    The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API

    bcgsc/pori_graphkb_loader’s past year of commit activity
    JavaScript 6 GPL-3.0 4 12 3 Updated Sep 10, 2025
  • pori_ipr_python Public archive

    [ARCHIVED] Python adapter for generating reports uploaded to IPR using the PORI platform

    bcgsc/pori_ipr_python’s past year of commit activity
    Python 6 GPL-3.0 1 0 0 Updated Sep 10, 2025
  • pori_graphkb_python Public archive

    [ARCHIVED] Python adapter package for querying the GraphKB API

    bcgsc/pori_graphkb_python’s past year of commit activity
    Python 7 GPL-3.0 1 0 0 Updated Sep 10, 2025
  • straglr Public

    Tandem repeat expansion detection or genotyping from long-read alignments

    bcgsc/straglr’s past year of commit activity
    Python 124 13 26 0 Updated Sep 10, 2025
  • pori_graphkb_api Public

    REST API for the GraphKB project

    bcgsc/pori_graphkb_api’s past year of commit activity
    JavaScript 4 GPL-3.0 1 6 0 Updated Sep 9, 2025
  • pori_ipr_api Public

    Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform

    bcgsc/pori_ipr_api’s past year of commit activity
    JavaScript 8 0 0 1 Updated Sep 9, 2025
  • RICO Public
    bcgsc/RICO’s past year of commit activity
    R 1 0 0 0 Updated Sep 5, 2025
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