Bump cwltool from 3.1.20250715140722 to 3.1.20250925164626

[dependabot]

Bumps cwltool from 3.1.20250715140722 to 3.1.20250925164626.

Release notes

Sourced from cwltool's releases.

3.1.20250925164626

In memory of @​tetron , RIP

What's Changed

• support Python 3.14 by @​mr-c in common-workflow-language/cwltool#2144
• py3.14 newer pydantic by @​mr-c in common-workflow-language/cwltool#2146
• github actions cibw: unpin to just minor version tag, not the full patch number by @​dependabot[bot] in https://github.com/ github actions cibw: unpin to just minor version tag, not the full patch number common-workflow-language/cwltool#2138

Deps

• Bump pypa/cibuildwheel from 3.0.1 to 3.1.0 by @​dependabot[bot] in common-workflow-language/cwltool#2137
• Bump mypy from 1.17.0 to 1.17.1 by @​dependabot[bot] in common-workflow-language/cwltool#2140
• Bump actions/checkout from 4 to 5 by @​dependabot[bot] in common-workflow-language/cwltool#2142
• cibw 3.1.x by @​mr-c in common-workflow-language/cwltool#2145
• Update setuptools-scm requirement from <9,>=8.0.4 to >=8.0.4,<10 by @​dependabot[bot] in common-workflow-language/cwltool#2148
• Update setuptools-scm[toml] requirement from <9,>=8.0.4 to >=8.0.4,<10 by @​dependabot[bot] in common-workflow-language/cwltool#2147
• Bump actions/setup-python from 5 to 6 by @​dependabot[bot] in common-workflow-language/cwltool#2149
• Update rdflib requirement from <7.2,>=4.2.2 to >=4.2.2,<7.3 by @​dependabot[bot] in common-workflow-language/cwltool#2153
• Bump mypy from 1.17.1 to 1.18.2 by @​dependabot[bot] in common-workflow-language/cwltool#2152
• Bump pypa/cibuildwheel from 3.1 to 3.2 by @​dependabot[bot] in common-workflow-language/cwltool#2154

Full Changelog: common-workflow-language/cwltool@3.1.20250715140722...3.1.20250925164626

Commits

• 380143e Bump pypa/cibuildwheel from 3.1 to 3.2
• d9fe55b Bump mypy from 1.17.1 to 1.18.2
• 73f8757 skip some too-flaky biocontainers tests
• ffdd3e9 Update rdflib requirement from <7.2,>=4.2.2 to >=4.2.2,<7.3
• 3bed7bb Bump actions/setup-python from 5 to 6
• 256306a Update setuptools-scm[toml] requirement from <9,>=8.0.4 to >=8.0.4,<10
• 1287baa Update setuptools-scm requirement from <9,>=8.0.4 to >=8.0.4,<10
• d7fda53 circleci: upgrade to the larger arm instance
• 284a145 Python 3.14: test with newer pydantic
• 649d5c9 circle ci + cibuildwheel: allow upgrade to newer releases
• Additional commits viewable in compare view

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 72.69%. Comparing base (3f759b2) to head (a31a98b).
⚠️ Report is 1 commits behind head on master.
✅ All tests successful. No failed tests found.

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #813      +/-   ##
==========================================
- Coverage   72.70%   72.69%   -0.02%     
==========================================
  Files          90       90              
  Lines       11931    11931              
  Branches     2103     2103              
==========================================
- Hits         8675     8673       -2     
- Misses       2771     2772       +1     
- Partials      485      486       +1     

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