Refactored Framework and Added 3D Visualization Capabilities#3

Merged

MattsonCam merged 27 commits intomainfrom

Oct 29, 2025

Commits on Oct 14, 2025

Removed unused parameter

MattsonCam
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Cameron Mattson
committed
Doubled the crop dimensionsions and allowed

MattsonCam
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Cameron Mattson
committed
Decoupled logic to retrieve data paths and specs
Cameron Mattson
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Added capability to call multiple image savers
Cameron Mattson
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Updated to include the following:
Cameron Mattson
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Updated to use the image specs
Cameron Mattson
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Changes:
Cameron Mattson
committed

Commits on Oct 15, 2025

Updated to run from uv
Cameron Mattson
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Updated the uv environment to include the correct
Cameron Mattson
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Commits on Oct 16, 2025

Added documentation to whole slice saver
Cameron Mattson
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Refactored code to visualize 3D images
Cameron Mattson
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Ensured the generated predictions are only saved once
Cameron Mattson
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Renamed the visualization folder
Cameron Mattson
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Updated the save path for whole images
Cameron Mattson
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Updated a comment
Cameron Mattson
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Changes:
Cameron Mattson
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Updated documentation based on pr comments
Cameron Mattson
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Updated doc strings
Cameron Mattson
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Changed the indexing to the thresholded image and
Cameron Mattson
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Commits on Oct 17, 2025

Fixed bug when specifying original slice indices
Cameron Mattson
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Removed extra print statement
Cameron Mattson
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Changed to update whole image slice and stride
Cameron Mattson
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Commits on Oct 20, 2025

Added comments about padding and original crop computation
Cameron Mattson
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Commits on Oct 23, 2025

Modified channel mapping to account for the
Cameron Mattson
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Commits on Oct 27, 2025

Included the visualization code in one python file
Cameron Mattson
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Added necessary module and removed redundant print
Cameron Mattson
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Commits on Oct 29, 2025

Allows for a binary segmentation model that can be
Cameron Mattson
committed