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@vqdang vqdang commented Dec 3, 2021

Migrate existing .py in #180 to another branch. Included functionalities are:

  • Generic graph plotting onto canvas

  • Plat Scaler for calibrating probabilities

  • Pin scikit-image to avoid errors due to changes in the updated version.

  • Add functionalities

  • Add tests

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@shaneahmed shaneahmed left a comment

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I only have one comment on this PR as mentioned in scale.py
For travis, can you try to PIN opencv to the previous version on which it passed? I think that might be the issue.

vqdang and others added 4 commits December 3, 2021 17:15
- Pin scikit-image for travis errors
- Pin scikit-image to 0.18.3 to fix travis errors
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codecov bot commented Dec 6, 2021

Codecov Report

Merging #208 (a359e6f) into develop (d98d04b) will increase coverage by 0.00%.
The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff            @@
##           develop     #208    +/-   ##
=========================================
  Coverage    99.82%   99.83%            
=========================================
  Files           50       51     +1     
  Lines         4683     4792   +109     
  Branches       764      780    +16     
=========================================
+ Hits          4675     4784   +109     
  Misses           2        2            
  Partials         6        6            
Impacted Files Coverage Δ
tiatoolbox/models/__init__.py 100.00% <ø> (ø)
tiatoolbox/tools/graph.py 100.00% <ø> (ø)
tiatoolbox/tools/pyramid.py 100.00% <ø> (ø)
tiatoolbox/tools/stainaugment.py 100.00% <ø> (ø)
tiatoolbox/models/architecture/__init__.py 100.00% <100.00%> (ø)
tiatoolbox/tools/scale.py 100.00% <100.00%> (ø)
tiatoolbox/utils/visualization.py 100.00% <100.00%> (ø)

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@John-P John-P changed the title DEV: Add auxiliary functionality for slide graph DEV: Add Auxiliary Functionality For SlideGraph Dec 6, 2021
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John-P commented Dec 7, 2021

We now have some duplicate functionality to resolve. There is visualisation as part of the graph construction class and also another graph plotting function.

@shaneahmed shaneahmed merged commit 90e84e5 into develop Dec 7, 2021
@shaneahmed shaneahmed deleted the dev-slide-graph-aux-func branch December 7, 2021 13:27
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4 participants