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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 371 159

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 25 15

Repositories

Showing 10 of 449 repositories
  • exc_vis_manuscript Public

    Analysis and figure code for mouse excitatory visual cortex Patch-seq and whole neuron morphology manuscript

    AllenInstitute/exc_vis_manuscript’s past year of commit activity
    Python 0 1 0 0 Updated Nov 25, 2025
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 15 BSD-3-Clause 3 75 2 Updated Nov 25, 2025
  • acq4 Public Forked from acq4/acq4

    Data acquisition for patch clamp ephys / optogenetics / imaging experiments

    AllenInstitute/acq4’s past year of commit activity
    Python 1 MIT 53 0 0 Updated Nov 24, 2025
  • sonata Public

    Collaboration between BBP and AIBS

    AllenInstitute/sonata’s past year of commit activity
    Python 59 BSD-3-Clause 38 31 9 Updated Nov 24, 2025
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Nov 24, 2025
  • deep_ccf_registration Public

    Arbitrary modality registration to CCFv3 using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 24, 2025
  • jem Public

    Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

    AllenInstitute/jem’s past year of commit activity
    HTML 5 4 0 0 Updated Nov 24, 2025
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 90 31 19 5 Updated Nov 24, 2025
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 30 9 269 14 Updated Nov 24, 2025
  • human_patchseq_excitatory Public
    AllenInstitute/human_patchseq_excitatory’s past year of commit activity
    0 BSD-2-Clause 0 0 0 Updated Nov 24, 2025
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