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Official code for "MINeR: Direction-modulated implicit neural representation enables ultrafast multi-shell diffusion MRI"

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MINeR

Official code for "MINeR: Direction-modulated implicit neural representation enables ultrafast multi-shell diffusion MRI"
This repo holds the codes for MINeR.


1. Environmental Requirements

To run the reconstruction demo, the following dependencies are required:

  • Python 3.10
  • PyTorch 2.0.0
  • tinycudann 1.7
  • numpy 1.22.4
  • nibabel 5.3.2
  • (optional) matplotlib, tensorboard, h5py

2. Sample Data

This repo provides a toy undersampled demo dataset in demo_data/.
Full datasets can be downloaded from the HCP (Human Connectome Project) database.


3. Files Descriptions

MINeR/
├── run_demo.py # Demo script for training & interpolation
├── MINeR.pyc # Compiled core implementation
└── demo_data/ # Toy undersampled DWI data

4. Usage

To test the performance of MINeR, run the following command:

python run_demo.py --gpu 0 --epochs 1000 --summary_epoch 200

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Official code for "MINeR: Direction-modulated implicit neural representation enables ultrafast multi-shell diffusion MRI"

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