refactor: unify package links format in documentation for consistency

Author: stemangiola

posts/2025-01-15-introducing-tidyomics-ecosystem/index.qmd

@@ -150,8 +150,7 @@ With a single call you have a tidy interface ready for spatial, single-cell, bul
 ### tidyprint
 `tidyprint` offers a consistent, user-friendly print method for Bioconductor objects such as `SummarizedExperiment`, `SingleCellExperiment`, and others. It flattens complex S4 objects into tidy tibbles for straightforward inspection, summarization, and reporting—without modifying the underlying data. This approach makes it easy to explore and understand your data at a glance using familiar tidyverse conventions.
 
-**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/tidyprint.html)**  
-**[GitHub](https://github.com/tidyomics/tidyprint)**  
+**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/tidyprint.html)** | **[GitHub](https://github.com/tidyomics/tidyprint)**  
 
 ## Transcriptomics Packages
 
@@ -160,26 +159,22 @@ Each tidyomics package tackles a real-world analytical challenge.  Bulk RNA-seq
 ### tidySummarizedExperiment
 The tidy interface for `SummarizedExperiment` objects, enabling tidyverse operations on bulk RNA-seq data.
 
-**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/tidySummarizedExperiment.html)**  
-**[GitHub](https://github.com/tidyomics/tidySummarizedExperiment)**
+**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/tidySummarizedExperiment.html)** | **[GitHub](https://github.com/tidyomics/tidySummarizedExperiment)**
 
 ### tidySingleCellExperiment
 Single-cell experiments often contain millions of cells and dozens of matrices.  `tidySingleCellExperiment` flattens this complexity so you can focus on the biology instead of the bookkeeping.
 
-**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/tidySingleCellExperiment.html)**  
-**[GitHub](https://github.com/tidyomics/tidySingleCellExperiment)**
+**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/tidySingleCellExperiment.html)** | **[GitHub](https://github.com/tidyomics/tidySingleCellExperiment)**
 
 ### tidyseurat
 For Seurat users, `tidyseurat` adds the missing tidyverse layer without forcing you to abandon familiar Seurat functions.
 
-**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/tidyseurat.html)**  
-**[GitHub](https://github.com/stemangiola/tidyseurat)**
+**[CRAN](https://cran.r-project.org/web/packages/tidyseurat/index.html)** | **[GitHub](https://github.com/stemangiola/tidyseurat)**
 
 ### tidySpatialExperiment
 Spatial transcriptomics combines gene expression with tissue geography. `tidySpatialExperiment` brings the tidy philosophy to `SpatialExperiment` objects so you can transform, visualise and model spatial spots with the same verbs you already use for bulk and single-cell data.
 
-**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/tidySpatialExperiment.html)**  
-**[GitHub](https://github.com/william-hutchison/tidySpatialExperiment)**
+**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/tidySpatialExperiment.html)** | **[GitHub](https://github.com/william-hutchison/tidySpatialExperiment)**
 
 ## Genomics Packages
 
@@ -188,14 +183,12 @@ Genomic ranges represent locations along chromosomes—think of them as the geog
 ### plyranges
 A tidy interface for genomic ranges data, providing a grammar of genomic data manipulation.
 
-**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/plyranges.html)**  
-**[GitHub](https://github.com/tidyomics/plyranges)**
+**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/plyranges.html)** | **[GitHub](https://github.com/tidyomics/plyranges)**
 
 ### plyinteractions
 A tidy interface for genomic interaction data, enabling analysis of chromatin interactions.
 
-**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/plyinteractions.html)**  
-**[GitHub](https://github.com/tidyomics/plyinteractions)**
+**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/plyinteractions.html)** | **[GitHub](https://github.com/tidyomics/plyinteractions)**
 
 ## Analysis Packages (non-core packages)
 
@@ -204,14 +197,12 @@ The core adapters above focus on **data representation**; the packages below pro
 ### tidybulk
 A tidy framework for modular transcriptomic data analysis, `tidybulk` streamlines bulk RNA-seq workflows by integrating differential expression, batch correction, and gene set enrichment into a consistent, pipe-friendly grammar. It enables users to perform complex analyses with simple, readable code, leveraging tidyverse principles for reproducibility and clarity.
 
-**Bioconductor**: <https://www.bioconductor.org/packages/release/bioc/html/tidybulk.html>  
-**GitHub**: <https://github.com/stemangiola/tidybulk>
+**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/tidybulk.html)** | **[GitHub](https://github.com/stemangiola/tidybulk)**
 
 ### nullranges
 A tidy interface for statistical null range generation and overlap analysis in genomics. `nullranges` enables users to create matched sets of genomic ranges for robust enrichment testing, supporting reproducible and flexible workflows for tasks such as permutation-based significance assessment and background modeling.
 
-**Bioconductor**: <https://www.bioconductor.org/packages/release/bioc/html/nullranges.html>  
-**GitHub**: <https://github.com/nullranges>
+**[Bioconductor](https://www.bioconductor.org/packages/release/bioc/html/nullranges.html)** | **[GitHub](https://github.com/nullranges)**
 
 # Publications