Smal fixed and updates

Author: stemangiola

man/remove_redundancy-methods.Rd

@@ -1,5 +1,9 @@
 context('tximeta and Granges')
 
+library(tidybulk)
+# Load required data
+data(tximeta_summarizeToGene_object)
+
 test_that("tximeta 1",{
 
   duplicate = tximeta_summarizeToGene_object[1,]

man/rotate_dimensions-methods.Rd

@@ -671,8 +671,8 @@ airway |>
   pivot_transcript() |> 
   select(ql__PValue, lr_robust__PValue, voom__P.Value, voom_weights__P.Value, deseq2__pvalue) |> 
   ggpairs(columns = 1:5, size = 0.5) +
-  scale_x_continuous(trans = tidybulk::log10_reverse_trans()) +
-  scale_y_continuous(trans = tidybulk::log10_reverse_trans()) +
+  scale_y_log10_reverse() +
+  scale_x_log10_reverse() +
   my_theme +
   labs(title = "Pairplot of p-values across methods")
 ```