From e9680fb5d976928e3035fad8c4da4ee4e636879c Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Fri, 25 May 2018 19:05:35 -0400 Subject: [PATCH 1/8] MAINT: Remove deprecated traits --- nipype/interfaces/afni/preprocess.py | 6 ------ nipype/interfaces/base/specs.py | 23 +---------------------- 2 files changed, 1 insertion(+), 28 deletions(-) diff --git a/nipype/interfaces/afni/preprocess.py b/nipype/interfaces/afni/preprocess.py index cab527563a..7447569dd6 100644 --- a/nipype/interfaces/afni/preprocess.py +++ b/nipype/interfaces/afni/preprocess.py @@ -1810,12 +1810,6 @@ class ROIStatsInputSpec(CommandLineInputSpec): argstr='-mask_f2short', position=2) quiet = traits.Bool(desc='execute quietly', argstr='-quiet', position=1) - terminal_output = traits.Enum( - 'allatonce', - deprecated='1.0.0', - desc='Control terminal output:`allatonce` - waits till command is ' - 'finished to display output', - nohash=True) class ROIStatsOutputSpec(TraitedSpec): diff --git a/nipype/interfaces/base/specs.py b/nipype/interfaces/base/specs.py index 98b5ec674b..c07bdc4a71 100644 --- a/nipype/interfaces/base/specs.py +++ b/nipype/interfaces/base/specs.py @@ -319,13 +319,7 @@ class TraitedSpec(BaseTraitedSpec): class BaseInterfaceInputSpec(TraitedSpec): - ignore_exception = traits.Bool( - False, - usedefault=True, - nohash=True, - deprecated='1.0.0', - desc='Print an error message instead of throwing an exception ' - 'in case the interface fails to run') + pass class DynamicTraitedSpec(BaseTraitedSpec): @@ -364,21 +358,6 @@ class CommandLineInputSpec(BaseInterfaceInputSpec): args = traits.Str(argstr='%s', desc='Additional parameters to the command') environ = traits.DictStrStr( desc='Environment variables', usedefault=True, nohash=True) - # This input does not have a "usedefault=True" so the set_default_terminal_output() - # method would work - terminal_output = traits.Enum( - 'stream', - 'allatonce', - 'file', - 'none', - deprecated='1.0.0', - desc=('Control terminal output: `stream` - ' - 'displays to terminal immediately (default), ' - '`allatonce` - waits till command is ' - 'finished to display output, `file` - ' - 'writes output to file, `none` - output' - ' is ignored'), - nohash=True) class StdOutCommandLineInputSpec(CommandLineInputSpec): From a8837d6220cf8998066c1478c21fa72f72914def Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Fri, 25 May 2018 20:40:38 -0400 Subject: [PATCH 2/8] TEST: make specs + some manual tweaks --- nipype/algorithms/tests/test_auto_ACompCor.py | 5 ----- nipype/algorithms/tests/test_auto_ActivationCount.py | 5 ----- nipype/algorithms/tests/test_auto_AddCSVRow.py | 5 ----- nipype/algorithms/tests/test_auto_ArtifactDetect.py | 5 ----- nipype/algorithms/tests/test_auto_CalculateMedian.py | 5 ----- nipype/algorithms/tests/test_auto_ComputeDVARS.py | 5 ----- nipype/algorithms/tests/test_auto_ComputeMeshWarp.py | 5 ----- nipype/algorithms/tests/test_auto_CreateNifti.py | 5 ----- nipype/algorithms/tests/test_auto_Distance.py | 5 ----- .../tests/test_auto_FramewiseDisplacement.py | 5 ----- nipype/algorithms/tests/test_auto_FuzzyOverlap.py | 5 ----- nipype/algorithms/tests/test_auto_Gunzip.py | 9 +-------- nipype/algorithms/tests/test_auto_ICC.py | 5 ----- nipype/algorithms/tests/test_auto_MeshWarpMaths.py | 5 ----- nipype/algorithms/tests/test_auto_ModifyAffine.py | 5 ----- .../tests/test_auto_NonSteadyStateDetector.py | 9 +-------- nipype/algorithms/tests/test_auto_P2PDistance.py | 5 ----- nipype/algorithms/tests/test_auto_PickAtlas.py | 5 ----- nipype/algorithms/tests/test_auto_Similarity.py | 5 ----- nipype/algorithms/tests/test_auto_SimpleThreshold.py | 5 ----- nipype/algorithms/tests/test_auto_SpecifyModel.py | 5 ----- nipype/algorithms/tests/test_auto_SpecifySPMModel.py | 5 ----- .../algorithms/tests/test_auto_SpecifySparseModel.py | 5 ----- .../algorithms/tests/test_auto_StimulusCorrelation.py | 5 ----- nipype/algorithms/tests/test_auto_TCompCor.py | 5 ----- nipype/algorithms/tests/test_auto_TVTKBaseInterface.py | 7 +------ nipype/algorithms/tests/test_auto_WarpPoints.py | 5 ----- nipype/interfaces/afni/tests/test_auto_ABoverlap.py | 9 --------- nipype/interfaces/afni/tests/test_auto_AFNICommand.py | 9 --------- .../interfaces/afni/tests/test_auto_AFNICommandBase.py | 9 --------- .../afni/tests/test_auto_AFNIPythonCommand.py | 9 --------- nipype/interfaces/afni/tests/test_auto_AFNItoNIFTI.py | 9 --------- .../interfaces/afni/tests/test_auto_AlignEpiAnatPy.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Allineate.py | 9 --------- nipype/interfaces/afni/tests/test_auto_AutoTLRC.py | 9 --------- .../interfaces/afni/tests/test_auto_AutoTcorrelate.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Autobox.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Automask.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Axialize.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Bandpass.py | 9 --------- nipype/interfaces/afni/tests/test_auto_BlurInMask.py | 9 --------- nipype/interfaces/afni/tests/test_auto_BlurToFWHM.py | 9 --------- nipype/interfaces/afni/tests/test_auto_BrickStat.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Bucket.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Calc.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Cat.py | 9 --------- nipype/interfaces/afni/tests/test_auto_CatMatvec.py | 9 --------- nipype/interfaces/afni/tests/test_auto_CenterMass.py | 9 --------- nipype/interfaces/afni/tests/test_auto_ClipLevel.py | 9 --------- nipype/interfaces/afni/tests/test_auto_ConvertDset.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Copy.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Deconvolve.py | 9 --------- .../afni/tests/test_auto_DegreeCentrality.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Despike.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Detrend.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Dot.py | 9 --------- nipype/interfaces/afni/tests/test_auto_ECM.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Edge3.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Eval.py | 9 --------- nipype/interfaces/afni/tests/test_auto_FWHMx.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Fim.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Fourier.py | 9 --------- nipype/interfaces/afni/tests/test_auto_GCOR.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Hist.py | 9 --------- nipype/interfaces/afni/tests/test_auto_LFCD.py | 9 --------- nipype/interfaces/afni/tests/test_auto_LocalBistat.py | 9 --------- nipype/interfaces/afni/tests/test_auto_MaskTool.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Maskave.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Means.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Merge.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Notes.py | 9 --------- nipype/interfaces/afni/tests/test_auto_NwarpAdjust.py | 9 --------- nipype/interfaces/afni/tests/test_auto_NwarpApply.py | 9 --------- nipype/interfaces/afni/tests/test_auto_NwarpCat.py | 9 --------- nipype/interfaces/afni/tests/test_auto_OneDToolPy.py | 9 --------- nipype/interfaces/afni/tests/test_auto_OutlierCount.py | 9 --------- nipype/interfaces/afni/tests/test_auto_QualityIndex.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Qwarp.py | 9 --------- .../interfaces/afni/tests/test_auto_QwarpPlusMinus.py | 9 --------- nipype/interfaces/afni/tests/test_auto_ROIStats.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Refit.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Remlfit.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Resample.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Retroicor.py | 9 --------- nipype/interfaces/afni/tests/test_auto_SVMTest.py | 9 --------- nipype/interfaces/afni/tests/test_auto_SVMTrain.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Seg.py | 9 --------- nipype/interfaces/afni/tests/test_auto_SkullStrip.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Synthesize.py | 9 --------- nipype/interfaces/afni/tests/test_auto_TCat.py | 9 --------- nipype/interfaces/afni/tests/test_auto_TCatSubBrick.py | 9 --------- nipype/interfaces/afni/tests/test_auto_TCorr1D.py | 9 --------- nipype/interfaces/afni/tests/test_auto_TCorrMap.py | 9 --------- nipype/interfaces/afni/tests/test_auto_TCorrelate.py | 9 --------- nipype/interfaces/afni/tests/test_auto_TNorm.py | 9 --------- nipype/interfaces/afni/tests/test_auto_TProject.py | 9 --------- nipype/interfaces/afni/tests/test_auto_TShift.py | 9 --------- nipype/interfaces/afni/tests/test_auto_TStat.py | 9 --------- nipype/interfaces/afni/tests/test_auto_To3D.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Undump.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Unifize.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Volreg.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Warp.py | 9 --------- nipype/interfaces/afni/tests/test_auto_ZCutUp.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Zcat.py | 9 --------- nipype/interfaces/afni/tests/test_auto_Zeropad.py | 9 --------- nipype/interfaces/ants/tests/test_auto_ANTS.py | 9 --------- nipype/interfaces/ants/tests/test_auto_ANTSCommand.py | 9 --------- .../ants/tests/test_auto_AffineInitializer.py | 9 --------- .../interfaces/ants/tests/test_auto_AntsJointFusion.py | 9 --------- .../interfaces/ants/tests/test_auto_ApplyTransforms.py | 9 --------- .../ants/tests/test_auto_ApplyTransformsToPoints.py | 9 --------- nipype/interfaces/ants/tests/test_auto_Atropos.py | 9 --------- .../ants/tests/test_auto_AverageAffineTransform.py | 9 --------- .../interfaces/ants/tests/test_auto_AverageImages.py | 9 --------- .../interfaces/ants/tests/test_auto_BrainExtraction.py | 9 --------- .../ants/tests/test_auto_ComposeMultiTransform.py | 9 --------- .../ants/tests/test_auto_ConvertScalarImageToRGB.py | 9 --------- .../ants/tests/test_auto_CorticalThickness.py | 9 --------- .../tests/test_auto_CreateJacobianDeterminantImage.py | 9 --------- .../ants/tests/test_auto_CreateTiledMosaic.py | 9 --------- nipype/interfaces/ants/tests/test_auto_DenoiseImage.py | 9 --------- .../interfaces/ants/tests/test_auto_GenWarpFields.py | 9 --------- nipype/interfaces/ants/tests/test_auto_JointFusion.py | 9 --------- .../interfaces/ants/tests/test_auto_KellyKapowski.py | 9 --------- .../interfaces/ants/tests/test_auto_LabelGeometry.py | 9 --------- .../ants/tests/test_auto_LaplacianThickness.py | 9 --------- .../ants/tests/test_auto_MeasureImageSimilarity.py | 9 --------- .../interfaces/ants/tests/test_auto_MultiplyImages.py | 9 --------- .../ants/tests/test_auto_N4BiasFieldCorrection.py | 9 --------- nipype/interfaces/ants/tests/test_auto_Registration.py | 9 --------- .../ants/tests/test_auto_RegistrationSynQuick.py | 9 --------- .../ants/tests/test_auto_WarpImageMultiTransform.py | 9 --------- .../test_auto_WarpTimeSeriesImageMultiTransform.py | 9 --------- .../ants/tests/test_auto_antsIntroduction.py | 9 --------- .../ants/tests/test_auto_buildtemplateparallel.py | 9 --------- .../interfaces/base/tests/test_auto_BaseInterface.py | 7 +------ nipype/interfaces/base/tests/test_auto_CommandLine.py | 9 --------- .../base/tests/test_auto_LibraryBaseInterface.py | 7 +------ .../interfaces/base/tests/test_auto_MpiCommandLine.py | 9 --------- .../base/tests/test_auto_SEMLikeCommandLine.py | 9 --------- .../interfaces/base/tests/test_auto_SimpleInterface.py | 7 +------ .../base/tests/test_auto_StdOutCommandLine.py | 9 --------- nipype/interfaces/brainsuite/tests/test_auto_BDP.py | 9 --------- nipype/interfaces/brainsuite/tests/test_auto_Bfc.py | 9 --------- nipype/interfaces/brainsuite/tests/test_auto_Bse.py | 9 --------- .../interfaces/brainsuite/tests/test_auto_Cerebro.py | 9 --------- nipype/interfaces/brainsuite/tests/test_auto_Cortex.py | 9 --------- nipype/interfaces/brainsuite/tests/test_auto_Dewisp.py | 9 --------- nipype/interfaces/brainsuite/tests/test_auto_Dfs.py | 9 --------- .../interfaces/brainsuite/tests/test_auto_Hemisplit.py | 9 --------- .../interfaces/brainsuite/tests/test_auto_Pialmesh.py | 9 --------- nipype/interfaces/brainsuite/tests/test_auto_Pvc.py | 9 --------- nipype/interfaces/brainsuite/tests/test_auto_SVReg.py | 9 --------- .../interfaces/brainsuite/tests/test_auto_Scrubmask.py | 9 --------- .../brainsuite/tests/test_auto_Skullfinder.py | 9 --------- nipype/interfaces/brainsuite/tests/test_auto_Tca.py | 9 --------- .../brainsuite/tests/test_auto_ThicknessPVC.py | 9 --------- .../interfaces/camino/tests/test_auto_AnalyzeHeader.py | 9 --------- .../camino/tests/test_auto_ComputeEigensystem.py | 9 --------- .../tests/test_auto_ComputeFractionalAnisotropy.py | 9 --------- .../camino/tests/test_auto_ComputeMeanDiffusivity.py | 9 --------- .../camino/tests/test_auto_ComputeTensorTrace.py | 9 --------- nipype/interfaces/camino/tests/test_auto_Conmat.py | 9 --------- nipype/interfaces/camino/tests/test_auto_DT2NIfTI.py | 9 --------- nipype/interfaces/camino/tests/test_auto_DTIFit.py | 9 --------- nipype/interfaces/camino/tests/test_auto_DTLUTGen.py | 9 --------- nipype/interfaces/camino/tests/test_auto_DTMetric.py | 9 --------- nipype/interfaces/camino/tests/test_auto_FSL2Scheme.py | 9 --------- .../interfaces/camino/tests/test_auto_Image2Voxel.py | 9 --------- nipype/interfaces/camino/tests/test_auto_ImageStats.py | 9 --------- nipype/interfaces/camino/tests/test_auto_LinRecon.py | 9 --------- nipype/interfaces/camino/tests/test_auto_MESD.py | 9 --------- nipype/interfaces/camino/tests/test_auto_ModelFit.py | 9 --------- .../camino/tests/test_auto_NIfTIDT2Camino.py | 9 --------- nipype/interfaces/camino/tests/test_auto_PicoPDFs.py | 9 --------- .../camino/tests/test_auto_ProcStreamlines.py | 9 --------- nipype/interfaces/camino/tests/test_auto_QBallMX.py | 9 --------- nipype/interfaces/camino/tests/test_auto_SFLUTGen.py | 9 --------- .../camino/tests/test_auto_SFPICOCalibData.py | 9 --------- nipype/interfaces/camino/tests/test_auto_SFPeaks.py | 9 --------- nipype/interfaces/camino/tests/test_auto_Shredder.py | 9 --------- nipype/interfaces/camino/tests/test_auto_Track.py | 9 --------- .../camino/tests/test_auto_TrackBallStick.py | 9 --------- .../camino/tests/test_auto_TrackBayesDirac.py | 9 --------- .../camino/tests/test_auto_TrackBedpostxDeter.py | 9 --------- .../camino/tests/test_auto_TrackBedpostxProba.py | 9 --------- .../camino/tests/test_auto_TrackBootstrap.py | 9 --------- nipype/interfaces/camino/tests/test_auto_TrackDT.py | 9 --------- nipype/interfaces/camino/tests/test_auto_TrackPICo.py | 9 --------- .../interfaces/camino/tests/test_auto_TractShredder.py | 9 --------- .../camino/tests/test_auto_VtkStreamlines.py | 9 --------- .../camino2trackvis/tests/test_auto_Camino2Trackvis.py | 9 --------- .../camino2trackvis/tests/test_auto_Trackvis2Camino.py | 9 --------- .../interfaces/cmtk/tests/test_auto_AverageNetworks.py | 5 ----- .../cmtk/tests/test_auto_CFFBaseInterface.py | 7 +------ nipype/interfaces/cmtk/tests/test_auto_CFFConverter.py | 5 ----- nipype/interfaces/cmtk/tests/test_auto_CreateNodes.py | 5 ----- .../interfaces/cmtk/tests/test_auto_MergeCNetworks.py | 5 ----- .../cmtk/tests/test_auto_NetworkBasedStatistic.py | 5 ----- .../interfaces/cmtk/tests/test_auto_NetworkXMetrics.py | 5 ----- nipype/interfaces/cmtk/tests/test_auto_Parcellate.py | 5 ----- nipype/interfaces/cmtk/tests/test_auto_ROIGen.py | 5 ----- .../diffusion_toolkit/tests/test_auto_DTIRecon.py | 9 --------- .../diffusion_toolkit/tests/test_auto_DTITracker.py | 9 --------- .../diffusion_toolkit/tests/test_auto_HARDIMat.py | 9 --------- .../diffusion_toolkit/tests/test_auto_ODFRecon.py | 9 --------- .../diffusion_toolkit/tests/test_auto_ODFTracker.py | 9 --------- .../diffusion_toolkit/tests/test_auto_SplineFilter.py | 9 --------- .../diffusion_toolkit/tests/test_auto_TrackMerge.py | 9 --------- nipype/interfaces/dipy/tests/test_auto_APMQball.py | 5 ----- nipype/interfaces/dipy/tests/test_auto_CSD.py | 5 ----- nipype/interfaces/dipy/tests/test_auto_DTI.py | 5 ----- .../dipy/tests/test_auto_DipyBaseInterface.py | 7 +------ .../dipy/tests/test_auto_DipyDiffusionInterface.py | 5 ----- .../dipy/tests/test_auto_EstimateResponseSH.py | 5 ----- nipype/interfaces/dipy/tests/test_auto_RESTORE.py | 5 ----- .../dipy/tests/test_auto_SimulateMultiTensor.py | 5 ----- .../dipy/tests/test_auto_StreamlineTractography.py | 5 ----- nipype/interfaces/dipy/tests/test_auto_TensorMode.py | 5 ----- .../interfaces/dipy/tests/test_auto_TrackDensityMap.py | 5 ----- .../interfaces/dtitk/tests/test_auto_AffScalarVol.py | 9 --------- .../dtitk/tests/test_auto_AffSymTensor3DVol.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_Affine.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_AffineTask.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_BinThresh.py | 9 --------- .../interfaces/dtitk/tests/test_auto_BinThreshTask.py | 9 --------- .../dtitk/tests/test_auto_CommandLineDtitk.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_ComposeXfm.py | 9 --------- .../interfaces/dtitk/tests/test_auto_ComposeXfmTask.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_Diffeo.py | 9 --------- .../dtitk/tests/test_auto_DiffeoScalarVol.py | 9 --------- .../dtitk/tests/test_auto_DiffeoSymTensor3DVol.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_DiffeoTask.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_Rigid.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_RigidTask.py | 9 --------- .../interfaces/dtitk/tests/test_auto_SVAdjustVoxSp.py | 9 --------- .../dtitk/tests/test_auto_SVAdjustVoxSpTask.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_SVResample.py | 9 --------- .../interfaces/dtitk/tests/test_auto_SVResampleTask.py | 9 --------- .../dtitk/tests/test_auto_TVAdjustOriginTask.py | 9 --------- .../interfaces/dtitk/tests/test_auto_TVAdjustVoxSp.py | 9 --------- .../dtitk/tests/test_auto_TVAdjustVoxSpTask.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_TVResample.py | 9 --------- .../interfaces/dtitk/tests/test_auto_TVResampleTask.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_TVtool.py | 9 --------- nipype/interfaces/dtitk/tests/test_auto_TVtoolTask.py | 9 --------- .../dtitk/tests/test_auto_affScalarVolTask.py | 9 --------- .../dtitk/tests/test_auto_affSymTensor3DVolTask.py | 9 --------- .../dtitk/tests/test_auto_diffeoScalarVolTask.py | 9 --------- .../dtitk/tests/test_auto_diffeoSymTensor3DVolTask.py | 9 --------- .../interfaces/elastix/tests/test_auto_AnalyzeWarp.py | 9 --------- nipype/interfaces/elastix/tests/test_auto_ApplyWarp.py | 9 --------- .../elastix/tests/test_auto_EditTransform.py | 5 ----- .../interfaces/elastix/tests/test_auto_PointsWarp.py | 9 --------- .../interfaces/elastix/tests/test_auto_Registration.py | 9 --------- nipype/interfaces/freesurfer/tests/test_BBRegister.py | 10 ---------- .../freesurfer/tests/test_auto_AddXFormToHeader.py | 9 --------- .../freesurfer/tests/test_auto_Aparc2Aseg.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_Apas2Aseg.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_ApplyMask.py | 9 --------- .../freesurfer/tests/test_auto_ApplyVolTransform.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_Binarize.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_CALabel.py | 9 --------- .../freesurfer/tests/test_auto_CANormalize.py | 9 --------- .../freesurfer/tests/test_auto_CARegister.py | 9 --------- .../tests/test_auto_CheckTalairachAlignment.py | 9 --------- .../freesurfer/tests/test_auto_Concatenate.py | 9 --------- .../freesurfer/tests/test_auto_ConcatenateLTA.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_Contrast.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_Curvature.py | 9 --------- .../freesurfer/tests/test_auto_CurvatureStats.py | 9 --------- .../freesurfer/tests/test_auto_DICOMConvert.py | 9 --------- .../freesurfer/tests/test_auto_EMRegister.py | 9 --------- .../freesurfer/tests/test_auto_EditWMwithAseg.py | 9 --------- .../freesurfer/tests/test_auto_EulerNumber.py | 9 --------- .../freesurfer/tests/test_auto_ExtractMainComponent.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_FSCommand.py | 9 --------- .../freesurfer/tests/test_auto_FSCommandOpenMP.py | 9 --------- .../freesurfer/tests/test_auto_FSScriptCommand.py | 9 --------- .../freesurfer/tests/test_auto_FitMSParams.py | 9 --------- .../freesurfer/tests/test_auto_FixTopology.py | 9 --------- .../freesurfer/tests/test_auto_FuseSegmentations.py | 9 --------- nipype/interfaces/freesurfer/tests/test_auto_GLMFit.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_ImageInfo.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_Jacobian.py | 9 --------- .../freesurfer/tests/test_auto_LTAConvert.py | 9 --------- .../freesurfer/tests/test_auto_Label2Annot.py | 9 --------- .../freesurfer/tests/test_auto_Label2Label.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_Label2Vol.py | 9 --------- .../freesurfer/tests/test_auto_MNIBiasCorrection.py | 9 --------- .../freesurfer/tests/test_auto_MPRtoMNI305.py | 9 --------- .../freesurfer/tests/test_auto_MRIConvert.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_MRICoreg.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_MRIFill.py | 9 --------- .../freesurfer/tests/test_auto_MRIMarchingCubes.py | 9 --------- .../freesurfer/tests/test_auto_MRIPretess.py | 9 --------- .../freesurfer/tests/test_auto_MRISPreproc.py | 9 --------- .../freesurfer/tests/test_auto_MRISPreprocReconAll.py | 9 --------- .../freesurfer/tests/test_auto_MRITessellate.py | 9 --------- .../freesurfer/tests/test_auto_MRIsCALabel.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_MRIsCalc.py | 9 --------- .../freesurfer/tests/test_auto_MRIsCombine.py | 9 --------- .../freesurfer/tests/test_auto_MRIsConvert.py | 9 --------- .../freesurfer/tests/test_auto_MRIsExpand.py | 9 --------- .../freesurfer/tests/test_auto_MRIsInflate.py | 9 --------- nipype/interfaces/freesurfer/tests/test_auto_MS_LDA.py | 9 --------- .../freesurfer/tests/test_auto_MakeAverageSubject.py | 9 --------- .../freesurfer/tests/test_auto_MakeSurfaces.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_Normalize.py | 9 --------- .../freesurfer/tests/test_auto_OneSampleTTest.py | 9 --------- nipype/interfaces/freesurfer/tests/test_auto_Paint.py | 9 --------- .../freesurfer/tests/test_auto_ParcellationStats.py | 9 --------- .../freesurfer/tests/test_auto_ParseDICOMDir.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_ReconAll.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_Register.py | 9 --------- .../tests/test_auto_RegisterAVItoTalairach.py | 9 --------- .../tests/test_auto_RelabelHypointensities.py | 9 --------- .../freesurfer/tests/test_auto_RemoveIntersection.py | 9 --------- .../freesurfer/tests/test_auto_RemoveNeck.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_Resample.py | 9 --------- .../freesurfer/tests/test_auto_RobustRegister.py | 9 --------- .../freesurfer/tests/test_auto_RobustTemplate.py | 9 --------- .../freesurfer/tests/test_auto_SampleToSurface.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_SegStats.py | 9 --------- .../freesurfer/tests/test_auto_SegStatsReconAll.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_SegmentCC.py | 9 --------- .../interfaces/freesurfer/tests/test_auto_SegmentWM.py | 9 --------- nipype/interfaces/freesurfer/tests/test_auto_Smooth.py | 9 --------- .../freesurfer/tests/test_auto_SmoothTessellation.py | 9 --------- nipype/interfaces/freesurfer/tests/test_auto_Sphere.py | 9 --------- .../freesurfer/tests/test_auto_SphericalAverage.py | 9 --------- .../freesurfer/tests/test_auto_Surface2VolTransform.py | 9 --------- .../freesurfer/tests/test_auto_SurfaceSmooth.py | 9 --------- .../freesurfer/tests/test_auto_SurfaceSnapshots.py | 9 --------- .../freesurfer/tests/test_auto_SurfaceTransform.py | 9 --------- .../freesurfer/tests/test_auto_SynthesizeFLASH.py | 9 --------- .../freesurfer/tests/test_auto_TalairachAVI.py | 9 --------- .../freesurfer/tests/test_auto_TalairachQC.py | 9 --------- .../freesurfer/tests/test_auto_Tkregister2.py | 9 --------- .../freesurfer/tests/test_auto_UnpackSDICOMDir.py | 9 --------- .../freesurfer/tests/test_auto_VolumeMask.py | 9 --------- .../freesurfer/tests/test_auto_WatershedSkullStrip.py | 9 --------- nipype/interfaces/fsl/tests/test_FILMGLS.py | 3 --- nipype/interfaces/fsl/tests/test_auto_AR1Image.py | 9 --------- .../interfaces/fsl/tests/test_auto_AccuracyTester.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ApplyMask.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ApplyTOPUP.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ApplyWarp.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ApplyXFM.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_AvScale.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_B0Calc.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_BEDPOSTX5.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_BET.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_BinaryMaths.py | 9 --------- .../interfaces/fsl/tests/test_auto_ChangeDataType.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Classifier.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Cleaner.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Cluster.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Complex.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ContrastMgr.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ConvertWarp.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ConvertXFM.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_CopyGeom.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_DTIFit.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_DilateImage.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_DistanceMap.py | 9 --------- .../interfaces/fsl/tests/test_auto_DualRegression.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_EPIDeWarp.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Eddy.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_EddyCorrect.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_EpiReg.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ErodeImage.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ExtractROI.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_FAST.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_FEAT.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_FEATModel.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_FEATRegister.py | 5 ----- nipype/interfaces/fsl/tests/test_auto_FIRST.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_FLAMEO.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_FLIRT.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_FNIRT.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_FSLCommand.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_FSLXCommand.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_FUGUE.py | 9 --------- .../interfaces/fsl/tests/test_auto_FeatureExtractor.py | 9 --------- .../interfaces/fsl/tests/test_auto_FilterRegressor.py | 9 --------- .../interfaces/fsl/tests/test_auto_FindTheBiggest.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_GLM.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ICA_AROMA.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ImageMaths.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ImageMeants.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ImageStats.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_InvWarp.py | 9 --------- .../interfaces/fsl/tests/test_auto_IsotropicSmooth.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_L2Model.py | 9 +-------- nipype/interfaces/fsl/tests/test_auto_Level1Design.py | 5 ----- nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_MELODIC.py | 9 --------- .../fsl/tests/test_auto_MakeDyadicVectors.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_MathsCommand.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_MaxImage.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_MaxnImage.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_MeanImage.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_MedianImage.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Merge.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_MinImage.py | 9 --------- .../interfaces/fsl/tests/test_auto_MotionOutliers.py | 9 --------- .../interfaces/fsl/tests/test_auto_MultiImageMaths.py | 9 --------- .../fsl/tests/test_auto_MultipleRegressDesign.py | 5 ----- nipype/interfaces/fsl/tests/test_auto_Overlay.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_PRELUDE.py | 9 --------- .../interfaces/fsl/tests/test_auto_PercentileImage.py | 9 --------- .../interfaces/fsl/tests/test_auto_PlotMotionParams.py | 9 --------- .../interfaces/fsl/tests/test_auto_PlotTimeSeries.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py | 9 --------- .../interfaces/fsl/tests/test_auto_PrepareFieldmap.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_ProjThresh.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Randomise.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_RobustFOV.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_SMM.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_SUSAN.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_SigLoss.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Slice.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_SliceTimer.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Slicer.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Smooth.py | 9 --------- .../interfaces/fsl/tests/test_auto_SmoothEstimate.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_SpatialFilter.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Split.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_StdImage.py | 9 --------- .../interfaces/fsl/tests/test_auto_SwapDimensions.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_TOPUP.py | 9 --------- .../interfaces/fsl/tests/test_auto_TemporalFilter.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Threshold.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_Training.py | 9 --------- .../fsl/tests/test_auto_TrainingSetCreator.py | 8 +------- nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_VecReg.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_WarpPoints.py | 9 --------- .../fsl/tests/test_auto_WarpPointsFromStd.py | 9 --------- .../interfaces/fsl/tests/test_auto_WarpPointsToStd.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_WarpUtils.py | 9 --------- nipype/interfaces/fsl/tests/test_auto_XFibres5.py | 9 --------- nipype/interfaces/fsl/tests/test_preprocess.py | 4 ++-- nipype/interfaces/minc/tests/test_auto_Average.py | 9 --------- nipype/interfaces/minc/tests/test_auto_BBox.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Beast.py | 9 --------- nipype/interfaces/minc/tests/test_auto_BestLinReg.py | 9 --------- nipype/interfaces/minc/tests/test_auto_BigAverage.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Blob.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Blur.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Calc.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Convert.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Copy.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Dump.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Extract.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Gennlxfm.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Math.py | 9 --------- nipype/interfaces/minc/tests/test_auto_NlpFit.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Norm.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Pik.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Resample.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Reshape.py | 9 --------- nipype/interfaces/minc/tests/test_auto_ToEcat.py | 9 --------- nipype/interfaces/minc/tests/test_auto_ToRaw.py | 9 --------- nipype/interfaces/minc/tests/test_auto_VolSymm.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Volcentre.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Voliso.py | 9 --------- nipype/interfaces/minc/tests/test_auto_Volpad.py | 9 --------- nipype/interfaces/minc/tests/test_auto_XfmAvg.py | 9 --------- nipype/interfaces/minc/tests/test_auto_XfmConcat.py | 9 --------- nipype/interfaces/minc/tests/test_auto_XfmInvert.py | 9 --------- .../mipav/tests/test_auto_JistBrainMgdmSegmentation.py | 9 --------- .../tests/test_auto_JistBrainMp2rageDuraEstimation.py | 9 --------- .../tests/test_auto_JistBrainMp2rageSkullStripping.py | 9 --------- .../tests/test_auto_JistBrainPartialVolumeFilter.py | 9 --------- .../tests/test_auto_JistCortexSurfaceMeshInflation.py | 9 --------- .../tests/test_auto_JistIntensityMp2rageMasking.py | 9 --------- .../tests/test_auto_JistLaminarProfileCalculator.py | 9 --------- .../tests/test_auto_JistLaminarProfileGeometry.py | 9 --------- .../tests/test_auto_JistLaminarProfileSampling.py | 9 --------- .../mipav/tests/test_auto_JistLaminarROIAveraging.py | 9 --------- .../tests/test_auto_JistLaminarVolumetricLayering.py | 9 --------- .../tests/test_auto_MedicAlgorithmImageCalculator.py | 9 --------- .../mipav/tests/test_auto_MedicAlgorithmLesionToads.py | 9 --------- .../tests/test_auto_MedicAlgorithmMipavReorient.py | 9 --------- .../mipav/tests/test_auto_MedicAlgorithmN3.py | 9 --------- .../mipav/tests/test_auto_MedicAlgorithmSPECTRE2010.py | 9 --------- .../test_auto_MedicAlgorithmThresholdToBinaryMask.py | 9 --------- nipype/interfaces/mipav/tests/test_auto_RandomVol.py | 9 --------- .../mixins/tests/test_auto_ReportCapableInterface.py | 7 +------ nipype/interfaces/mne/tests/test_auto_WatershedBEM.py | 9 --------- .../test_auto_ConstrainedSphericalDeconvolution.py | 9 --------- .../tests/test_auto_DWI2SphericalHarmonicsImage.py | 9 --------- nipype/interfaces/mrtrix/tests/test_auto_DWI2Tensor.py | 9 --------- .../tests/test_auto_DiffusionTensorStreamlineTrack.py | 9 --------- .../mrtrix/tests/test_auto_Directions2Amplitude.py | 9 --------- nipype/interfaces/mrtrix/tests/test_auto_Erode.py | 9 --------- .../mrtrix/tests/test_auto_EstimateResponseForSH.py | 9 --------- .../interfaces/mrtrix/tests/test_auto_FilterTracks.py | 9 --------- .../interfaces/mrtrix/tests/test_auto_FindShPeaks.py | 9 --------- .../mrtrix/tests/test_auto_GenerateDirections.py | 9 --------- .../mrtrix/tests/test_auto_GenerateWhiteMatterMask.py | 9 --------- nipype/interfaces/mrtrix/tests/test_auto_MRConvert.py | 9 --------- nipype/interfaces/mrtrix/tests/test_auto_MRMultiply.py | 9 --------- .../interfaces/mrtrix/tests/test_auto_MRTransform.py | 9 --------- nipype/interfaces/mrtrix/tests/test_auto_MRTrixInfo.py | 9 --------- .../interfaces/mrtrix/tests/test_auto_MRTrixViewer.py | 9 --------- .../mrtrix/tests/test_auto_MedianFilter3D.py | 9 --------- ...babilisticSphericallyDeconvolutedStreamlineTrack.py | 9 --------- ...test_auto_SphericallyDeconvolutedStreamlineTrack.py | 9 --------- .../mrtrix/tests/test_auto_StreamlineTrack.py | 9 --------- .../mrtrix/tests/test_auto_Tensor2ApparentDiffusion.py | 9 --------- .../tests/test_auto_Tensor2FractionalAnisotropy.py | 9 --------- .../interfaces/mrtrix/tests/test_auto_Tensor2Vector.py | 9 --------- nipype/interfaces/mrtrix/tests/test_auto_Threshold.py | 9 --------- .../interfaces/mrtrix/tests/test_auto_Tracks2Prob.py | 9 --------- .../mrtrix3/tests/test_auto_ACTPrepareFSL.py | 9 --------- nipype/interfaces/mrtrix3/tests/test_auto_BrainMask.py | 9 --------- .../mrtrix3/tests/test_auto_BuildConnectome.py | 9 --------- .../interfaces/mrtrix3/tests/test_auto_ComputeTDI.py | 9 --------- .../interfaces/mrtrix3/tests/test_auto_DWIDenoise.py | 9 --------- .../interfaces/mrtrix3/tests/test_auto_DWIExtract.py | 9 --------- .../interfaces/mrtrix3/tests/test_auto_EstimateFOD.py | 9 --------- nipype/interfaces/mrtrix3/tests/test_auto_FitTensor.py | 9 --------- .../interfaces/mrtrix3/tests/test_auto_Generate5tt.py | 9 --------- .../interfaces/mrtrix3/tests/test_auto_LabelConfig.py | 9 --------- .../interfaces/mrtrix3/tests/test_auto_LabelConvert.py | 9 --------- nipype/interfaces/mrtrix3/tests/test_auto_MRConvert.py | 9 --------- nipype/interfaces/mrtrix3/tests/test_auto_MRMath.py | 9 --------- .../interfaces/mrtrix3/tests/test_auto_MRTrix3Base.py | 9 --------- nipype/interfaces/mrtrix3/tests/test_auto_Mesh2PVE.py | 9 --------- .../mrtrix3/tests/test_auto_ReplaceFSwithFIRST.py | 9 --------- .../interfaces/mrtrix3/tests/test_auto_ResponseSD.py | 9 --------- nipype/interfaces/mrtrix3/tests/test_auto_TCK2VTK.py | 9 --------- .../mrtrix3/tests/test_auto_TensorMetrics.py | 9 --------- .../interfaces/mrtrix3/tests/test_auto_Tractography.py | 9 --------- nipype/interfaces/niftyfit/tests/test_auto_DwiTool.py | 9 --------- nipype/interfaces/niftyfit/tests/test_auto_FitAsl.py | 9 --------- nipype/interfaces/niftyfit/tests/test_auto_FitDwi.py | 9 --------- nipype/interfaces/niftyfit/tests/test_auto_FitQt1.py | 9 --------- .../niftyfit/tests/test_auto_NiftyFitCommand.py | 9 --------- .../niftyreg/tests/test_auto_NiftyRegCommand.py | 9 --------- 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--------- .../niftyseg/tests/test_auto_MathsCommand.py | 9 --------- nipype/interfaces/niftyseg/tests/test_auto_Merge.py | 9 --------- .../niftyseg/tests/test_auto_NiftySegCommand.py | 9 --------- .../interfaces/niftyseg/tests/test_auto_PatchMatch.py | 9 --------- .../niftyseg/tests/test_auto_StatsCommand.py | 9 --------- .../interfaces/niftyseg/tests/test_auto_TupleMaths.py | 9 --------- .../interfaces/niftyseg/tests/test_auto_UnaryMaths.py | 9 --------- .../interfaces/niftyseg/tests/test_auto_UnaryStats.py | 9 --------- nipype/interfaces/nipy/tests/test_auto_ComputeMask.py | 5 ----- .../nipy/tests/test_auto_EstimateContrast.py | 5 ----- nipype/interfaces/nipy/tests/test_auto_FitGLM.py | 5 ----- .../nipy/tests/test_auto_NipyBaseInterface.py | 7 +------ nipype/interfaces/nipy/tests/test_auto_Similarity.py | 5 ----- .../nipy/tests/test_auto_SpaceTimeRealigner.py | 5 ----- nipype/interfaces/nipy/tests/test_auto_Trim.py | 5 ----- .../nitime/tests/test_auto_CoherenceAnalyzer.py | 5 ----- .../nitime/tests/test_auto_NitimeBaseInterface.py | 7 +------ .../test_auto_BRAINSPosteriorToContinuousClass.py | 9 --------- .../semtools/brains/tests/test_auto_BRAINSTalairach.py | 9 --------- .../brains/tests/test_auto_BRAINSTalairachMask.py | 9 --------- .../brains/tests/test_auto_GenerateEdgeMapImage.py | 9 --------- .../brains/tests/test_auto_GeneratePurePlugMask.py | 9 --------- .../brains/tests/test_auto_HistogramMatchingFilter.py | 9 --------- .../semtools/brains/tests/test_auto_SimilarityIndex.py | 9 --------- .../semtools/diffusion/tests/test_auto_DWIConvert.py | 9 --------- .../diffusion/tests/test_auto_compareTractInclusion.py | 9 --------- .../semtools/diffusion/tests/test_auto_dtiaverage.py | 9 --------- .../semtools/diffusion/tests/test_auto_dtiestim.py | 9 --------- .../semtools/diffusion/tests/test_auto_dtiprocess.py | 9 --------- .../tests/test_auto_extractNrrdVectorIndex.py | 9 --------- .../diffusion/tests/test_auto_gtractAnisotropyMap.py | 9 --------- .../diffusion/tests/test_auto_gtractAverageBvalues.py | 9 --------- .../diffusion/tests/test_auto_gtractClipAnisotropy.py | 9 --------- .../diffusion/tests/test_auto_gtractCoRegAnatomy.py | 9 --------- .../diffusion/tests/test_auto_gtractConcatDwi.py | 9 --------- .../tests/test_auto_gtractCopyImageOrientation.py | 9 --------- .../diffusion/tests/test_auto_gtractCoregBvalues.py | 9 --------- .../tests/test_auto_gtractCostFastMarching.py | 9 --------- .../tests/test_auto_gtractCreateGuideFiber.py | 9 --------- .../tests/test_auto_gtractFastMarchingTracking.py | 9 --------- .../diffusion/tests/test_auto_gtractFiberTracking.py | 9 --------- .../diffusion/tests/test_auto_gtractImageConformity.py | 9 --------- .../tests/test_auto_gtractInvertBSplineTransform.py | 9 --------- .../tests/test_auto_gtractInvertDisplacementField.py | 9 --------- .../tests/test_auto_gtractInvertRigidTransform.py | 9 --------- .../tests/test_auto_gtractResampleAnisotropy.py | 9 --------- .../diffusion/tests/test_auto_gtractResampleB0.py | 9 --------- .../tests/test_auto_gtractResampleCodeImage.py | 9 --------- .../tests/test_auto_gtractResampleDWIInPlace.py | 9 --------- .../diffusion/tests/test_auto_gtractResampleFibers.py | 9 --------- .../semtools/diffusion/tests/test_auto_gtractTensor.py | 9 --------- .../test_auto_gtractTransformToDisplacementField.py | 9 --------- .../semtools/diffusion/tests/test_auto_maxcurvature.py | 9 --------- .../tractography/tests/test_auto_UKFTractography.py | 9 --------- .../tractography/tests/test_auto_fiberprocess.py | 9 --------- .../tractography/tests/test_auto_fiberstats.py | 9 --------- .../tractography/tests/test_auto_fibertrack.py | 9 --------- .../semtools/filtering/tests/test_auto_CannyEdge.py | 9 --------- .../test_auto_CannySegmentationLevelSetImageFilter.py | 9 --------- .../semtools/filtering/tests/test_auto_DilateImage.py | 9 --------- .../semtools/filtering/tests/test_auto_DilateMask.py | 9 --------- .../semtools/filtering/tests/test_auto_DistanceMaps.py | 9 --------- .../tests/test_auto_DumpBinaryTrainingVectors.py | 9 --------- .../semtools/filtering/tests/test_auto_ErodeImage.py | 9 --------- .../filtering/tests/test_auto_FlippedDifference.py | 9 --------- .../tests/test_auto_GenerateBrainClippedImage.py | 9 --------- .../tests/test_auto_GenerateSummedGradientImage.py | 9 --------- .../filtering/tests/test_auto_GenerateTestImage.py | 9 --------- ...est_auto_GradientAnisotropicDiffusionImageFilter.py | 9 --------- .../tests/test_auto_HammerAttributeCreator.py | 9 --------- .../filtering/tests/test_auto_NeighborhoodMean.py | 9 --------- .../filtering/tests/test_auto_NeighborhoodMedian.py | 9 --------- .../filtering/tests/test_auto_STAPLEAnalysis.py | 9 --------- .../tests/test_auto_TextureFromNoiseImageFilter.py | 9 --------- .../filtering/tests/test_auto_TextureMeasureFilter.py | 9 --------- .../filtering/tests/test_auto_UnbiasedNonLocalMeans.py | 9 --------- .../semtools/legacy/tests/test_auto_scalartransform.py | 9 --------- .../registration/tests/test_auto_BRAINSDemonWarp.py | 9 --------- .../semtools/registration/tests/test_auto_BRAINSFit.py | 9 --------- .../registration/tests/test_auto_BRAINSResample.py | 9 --------- .../registration/tests/test_auto_BRAINSResize.py | 9 --------- .../tests/test_auto_BRAINSTransformFromFiducials.py | 9 --------- .../registration/tests/test_auto_VBRAINSDemonWarp.py | 9 --------- .../semtools/segmentation/tests/test_auto_BRAINSABC.py | 9 --------- .../tests/test_auto_BRAINSConstellationDetector.py | 9 --------- ...est_auto_BRAINSCreateLabelMapFromProbabilityMaps.py | 9 --------- .../semtools/segmentation/tests/test_auto_BRAINSCut.py | 9 --------- .../segmentation/tests/test_auto_BRAINSMultiSTAPLE.py | 9 --------- .../segmentation/tests/test_auto_BRAINSROIAuto.py | 9 --------- .../test_auto_BinaryMaskEditorBasedOnLandmarks.py | 9 --------- .../semtools/segmentation/tests/test_auto_ESLR.py | 9 --------- .../interfaces/semtools/tests/test_auto_DWICompare.py | 9 --------- .../semtools/tests/test_auto_DWISimpleCompare.py | 9 --------- .../test_auto_GenerateCsfClippedFromClassifiedImage.py | 9 --------- .../utilities/tests/test_auto_BRAINSAlignMSP.py | 9 --------- .../utilities/tests/test_auto_BRAINSClipInferior.py | 9 --------- .../tests/test_auto_BRAINSConstellationModeler.py | 9 --------- .../utilities/tests/test_auto_BRAINSEyeDetector.py | 9 --------- .../tests/test_auto_BRAINSInitializedControlPoints.py | 9 --------- .../tests/test_auto_BRAINSLandmarkInitializer.py | 9 --------- .../tests/test_auto_BRAINSLinearModelerEPCA.py | 9 --------- .../utilities/tests/test_auto_BRAINSLmkTransform.py | 9 --------- .../semtools/utilities/tests/test_auto_BRAINSMush.py | 9 --------- .../utilities/tests/test_auto_BRAINSSnapShotWriter.py | 9 --------- .../tests/test_auto_BRAINSTransformConvert.py | 9 --------- .../tests/test_auto_BRAINSTrimForegroundInDirection.py | 9 --------- .../utilities/tests/test_auto_CleanUpOverlapLabels.py | 9 --------- .../utilities/tests/test_auto_FindCenterOfBrain.py | 9 --------- .../test_auto_GenerateLabelMapFromProbabilityMap.py | 9 --------- .../utilities/tests/test_auto_ImageRegionPlotter.py | 9 --------- .../utilities/tests/test_auto_JointHistogram.py | 9 --------- .../utilities/tests/test_auto_ShuffleVectorsModule.py | 9 --------- .../semtools/utilities/tests/test_auto_fcsv_to_hdf5.py | 9 --------- .../utilities/tests/test_auto_insertMidACPCpoint.py | 9 --------- .../tests/test_auto_landmarksConstellationAligner.py | 9 --------- .../tests/test_auto_landmarksConstellationWeights.py | 9 --------- .../slicer/diffusion/tests/test_auto_DTIexport.py | 9 --------- .../slicer/diffusion/tests/test_auto_DTIimport.py | 9 --------- .../tests/test_auto_DWIJointRicianLMMSEFilter.py | 9 --------- .../diffusion/tests/test_auto_DWIRicianLMMSEFilter.py | 9 --------- .../diffusion/tests/test_auto_DWIToDTIEstimation.py | 9 --------- .../test_auto_DiffusionTensorScalarMeasurements.py | 9 --------- .../tests/test_auto_DiffusionWeightedVolumeMasking.py | 9 --------- .../diffusion/tests/test_auto_ResampleDTIVolume.py | 9 --------- .../tests/test_auto_TractographyLabelMapSeeding.py | 9 --------- .../filtering/tests/test_auto_AddScalarVolumes.py | 9 --------- .../filtering/tests/test_auto_CastScalarVolume.py | 9 --------- .../filtering/tests/test_auto_CheckerBoardFilter.py | 9 --------- .../tests/test_auto_CurvatureAnisotropicDiffusion.py | 9 --------- .../filtering/tests/test_auto_ExtractSkeleton.py | 9 --------- .../tests/test_auto_GaussianBlurImageFilter.py | 9 --------- .../tests/test_auto_GradientAnisotropicDiffusion.py | 9 --------- .../tests/test_auto_GrayscaleFillHoleImageFilter.py | 9 --------- .../tests/test_auto_GrayscaleGrindPeakImageFilter.py | 9 --------- .../filtering/tests/test_auto_HistogramMatching.py | 9 --------- .../filtering/tests/test_auto_ImageLabelCombine.py | 9 --------- .../filtering/tests/test_auto_MaskScalarVolume.py | 9 --------- .../filtering/tests/test_auto_MedianImageFilter.py | 9 --------- .../filtering/tests/test_auto_MultiplyScalarVolumes.py | 9 --------- .../tests/test_auto_N4ITKBiasFieldCorrection.py | 9 --------- .../tests/test_auto_ResampleScalarVectorDWIVolume.py | 9 --------- .../filtering/tests/test_auto_SubtractScalarVolumes.py | 9 --------- .../filtering/tests/test_auto_ThresholdScalarVolume.py | 9 --------- .../test_auto_VotingBinaryHoleFillingImageFilter.py | 9 --------- .../tests/test_auto_DWIUnbiasedNonLocalMeansFilter.py | 9 --------- .../legacy/tests/test_auto_AffineRegistration.py | 9 --------- .../tests/test_auto_BSplineDeformableRegistration.py | 9 --------- .../tests/test_auto_BSplineToDeformationField.py | 9 --------- .../tests/test_auto_ExpertAutomatedRegistration.py | 9 --------- .../legacy/tests/test_auto_LinearRegistration.py | 9 --------- .../test_auto_MultiResolutionAffineRegistration.py | 9 --------- .../legacy/tests/test_auto_OtsuThresholdImageFilter.py | 9 --------- .../tests/test_auto_OtsuThresholdSegmentation.py | 9 --------- .../legacy/tests/test_auto_ResampleScalarVolume.py | 9 --------- .../slicer/legacy/tests/test_auto_RigidRegistration.py | 9 --------- .../tests/test_auto_IntensityDifferenceMetric.py | 9 --------- .../test_auto_PETStandardUptakeValueComputation.py | 9 --------- .../registration/tests/test_auto_ACPCTransform.py | 9 --------- .../registration/tests/test_auto_BRAINSDemonWarp.py | 9 --------- .../slicer/registration/tests/test_auto_BRAINSFit.py | 9 --------- .../registration/tests/test_auto_BRAINSResample.py | 9 --------- .../tests/test_auto_FiducialRegistration.py | 9 --------- .../registration/tests/test_auto_VBRAINSDemonWarp.py | 9 --------- .../segmentation/tests/test_auto_BRAINSROIAuto.py | 9 --------- .../tests/test_auto_EMSegmentCommandLine.py | 9 --------- .../tests/test_auto_RobustStatisticsSegmenter.py | 9 --------- .../tests/test_auto_SimpleRegionGrowingSegmentation.py | 9 --------- .../slicer/tests/test_auto_DicomToNrrdConverter.py | 9 --------- .../tests/test_auto_EMSegmentTransformToNewFormat.py | 9 --------- .../slicer/tests/test_auto_GrayscaleModelMaker.py | 9 --------- .../slicer/tests/test_auto_LabelMapSmoothing.py | 9 --------- .../interfaces/slicer/tests/test_auto_MergeModels.py | 9 --------- nipype/interfaces/slicer/tests/test_auto_ModelMaker.py | 9 --------- .../slicer/tests/test_auto_ModelToLabelMap.py | 9 --------- .../slicer/tests/test_auto_OrientScalarVolume.py | 9 --------- .../slicer/tests/test_auto_ProbeVolumeWithModel.py | 9 --------- .../slicer/tests/test_auto_SlicerCommandLine.py | 9 --------- nipype/interfaces/spm/tests/test_auto_Analyze2nii.py | 10 ---------- .../spm/tests/test_auto_ApplyDeformations.py | 5 ----- .../spm/tests/test_auto_ApplyInverseDeformation.py | 5 ----- .../interfaces/spm/tests/test_auto_ApplyTransform.py | 5 ----- .../interfaces/spm/tests/test_auto_CalcCoregAffine.py | 5 ----- nipype/interfaces/spm/tests/test_auto_Coregister.py | 5 ----- nipype/interfaces/spm/tests/test_auto_CreateWarped.py | 5 ----- nipype/interfaces/spm/tests/test_auto_DARTEL.py | 5 ----- .../interfaces/spm/tests/test_auto_DARTELNorm2MNI.py | 5 ----- nipype/interfaces/spm/tests/test_auto_DicomImport.py | 5 ----- .../interfaces/spm/tests/test_auto_EstimateContrast.py | 5 ----- nipype/interfaces/spm/tests/test_auto_EstimateModel.py | 5 ----- .../interfaces/spm/tests/test_auto_FactorialDesign.py | 5 ----- nipype/interfaces/spm/tests/test_auto_FieldMap.py | 5 ----- nipype/interfaces/spm/tests/test_auto_Level1Design.py | 5 ----- .../spm/tests/test_auto_MultipleRegressionDesign.py | 5 ----- nipype/interfaces/spm/tests/test_auto_NewSegment.py | 5 ----- nipype/interfaces/spm/tests/test_auto_Normalize.py | 5 ----- nipype/interfaces/spm/tests/test_auto_Normalize12.py | 5 ----- .../spm/tests/test_auto_OneSampleTTestDesign.py | 5 ----- .../spm/tests/test_auto_PairedTTestDesign.py | 5 ----- nipype/interfaces/spm/tests/test_auto_Realign.py | 5 ----- nipype/interfaces/spm/tests/test_auto_Reslice.py | 5 ----- .../spm/tests/test_auto_ResliceToReference.py | 5 ----- nipype/interfaces/spm/tests/test_auto_SPMCommand.py | 5 ----- nipype/interfaces/spm/tests/test_auto_Segment.py | 5 ----- nipype/interfaces/spm/tests/test_auto_SliceTiming.py | 5 ----- nipype/interfaces/spm/tests/test_auto_Smooth.py | 5 ----- nipype/interfaces/spm/tests/test_auto_Threshold.py | 5 ----- .../spm/tests/test_auto_ThresholdStatistics.py | 5 ----- .../spm/tests/test_auto_TwoSampleTTestDesign.py | 5 ----- nipype/interfaces/spm/tests/test_auto_VBMSegment.py | 5 ----- nipype/interfaces/tests/test_auto_Bru2.py | 9 --------- nipype/interfaces/tests/test_auto_C3d.py | 9 --------- nipype/interfaces/tests/test_auto_C3dAffineTool.py | 9 --------- nipype/interfaces/tests/test_auto_DataFinder.py | 5 ----- nipype/interfaces/tests/test_auto_DataGrabber.py | 5 ----- nipype/interfaces/tests/test_auto_DataSink.py | 5 ----- nipype/interfaces/tests/test_auto_Dcm2nii.py | 9 --------- nipype/interfaces/tests/test_auto_Dcm2niix.py | 9 --------- nipype/interfaces/tests/test_auto_FreeSurferSource.py | 5 ----- nipype/interfaces/tests/test_auto_IOBase.py | 7 +------ nipype/interfaces/tests/test_auto_JSONFileGrabber.py | 5 ----- nipype/interfaces/tests/test_auto_JSONFileSink.py | 5 ----- nipype/interfaces/tests/test_auto_MatlabCommand.py | 9 --------- nipype/interfaces/tests/test_auto_MeshFix.py | 9 --------- nipype/interfaces/tests/test_auto_MySQLSink.py | 5 ----- .../interfaces/tests/test_auto_NiftiGeneratorBase.py | 7 +------ .../interfaces/tests/test_auto_NilearnBaseInterface.py | 7 +------ nipype/interfaces/tests/test_auto_PETPVC.py | 9 --------- nipype/interfaces/tests/test_auto_Quickshear.py | 9 --------- nipype/interfaces/tests/test_auto_Reorient.py | 5 ----- nipype/interfaces/tests/test_auto_S3DataGrabber.py | 5 ----- nipype/interfaces/tests/test_auto_SQLiteSink.py | 5 ----- nipype/interfaces/tests/test_auto_SSHDataGrabber.py | 5 ----- nipype/interfaces/tests/test_auto_SelectFiles.py | 5 ----- nipype/interfaces/tests/test_auto_SignalExtraction.py | 5 ----- nipype/interfaces/tests/test_auto_SlicerCommandLine.py | 9 --------- nipype/interfaces/tests/test_auto_XNATSink.py | 5 ----- nipype/interfaces/tests/test_auto_XNATSource.py | 5 ----- .../interfaces/utility/tests/test_auto_AssertEqual.py | 5 ----- nipype/interfaces/utility/tests/test_auto_Function.py | 9 +-------- nipype/interfaces/utility/tests/test_auto_Merge.py | 5 ----- nipype/interfaces/utility/tests/test_auto_Select.py | 5 ----- nipype/interfaces/utility/tests/test_auto_Split.py | 5 ----- .../interfaces/vista/tests/test_auto_Vnifti2Image.py | 9 --------- nipype/interfaces/vista/tests/test_auto_VtoMat.py | 9 --------- 807 files changed, 19 insertions(+), 6798 deletions(-) diff --git a/nipype/algorithms/tests/test_auto_ACompCor.py b/nipype/algorithms/tests/test_auto_ACompCor.py index f819f51f8b..eadbf3e126 100644 --- a/nipype/algorithms/tests/test_auto_ACompCor.py +++ b/nipype/algorithms/tests/test_auto_ACompCor.py @@ -8,11 +8,6 @@ def test_ACompCor_inputs(): components_file=dict(usedefault=True, ), header_prefix=dict(), high_pass_cutoff=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ignore_initial_volumes=dict(usedefault=True, ), mask_files=dict(), mask_index=dict( diff --git a/nipype/algorithms/tests/test_auto_ActivationCount.py b/nipype/algorithms/tests/test_auto_ActivationCount.py index 180f52a30e..d6e3ff7165 100644 --- a/nipype/algorithms/tests/test_auto_ActivationCount.py +++ b/nipype/algorithms/tests/test_auto_ActivationCount.py @@ -5,11 +5,6 @@ def test_ActivationCount_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict(mandatory=True, ), threshold=dict(mandatory=True, ), ) diff --git a/nipype/algorithms/tests/test_auto_AddCSVRow.py b/nipype/algorithms/tests/test_auto_AddCSVRow.py index 0af4639d41..4666a147d2 100644 --- a/nipype/algorithms/tests/test_auto_AddCSVRow.py +++ b/nipype/algorithms/tests/test_auto_AddCSVRow.py @@ -6,11 +6,6 @@ def test_AddCSVRow_inputs(): input_map = dict( _outputs=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(mandatory=True, ), ) inputs = AddCSVRow.input_spec() diff --git a/nipype/algorithms/tests/test_auto_ArtifactDetect.py b/nipype/algorithms/tests/test_auto_ArtifactDetect.py index 2ab28f60f3..85c57b8823 100644 --- a/nipype/algorithms/tests/test_auto_ArtifactDetect.py +++ b/nipype/algorithms/tests/test_auto_ArtifactDetect.py @@ -7,11 +7,6 @@ def test_ArtifactDetect_inputs(): input_map = dict( bound_by_brainmask=dict(usedefault=True, ), global_threshold=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), intersect_mask=dict(usedefault=True, ), mask_file=dict(), mask_threshold=dict(), diff --git a/nipype/algorithms/tests/test_auto_CalculateMedian.py b/nipype/algorithms/tests/test_auto_CalculateMedian.py index 84cafca391..1f9aa6cd4d 100644 --- a/nipype/algorithms/tests/test_auto_CalculateMedian.py +++ b/nipype/algorithms/tests/test_auto_CalculateMedian.py @@ -5,11 +5,6 @@ def test_CalculateMedian_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict(), median_file=dict(), median_per_file=dict(usedefault=True, ), diff --git a/nipype/algorithms/tests/test_auto_ComputeDVARS.py b/nipype/algorithms/tests/test_auto_ComputeDVARS.py index a35e785c99..ca263c77ac 100644 --- a/nipype/algorithms/tests/test_auto_ComputeDVARS.py +++ b/nipype/algorithms/tests/test_auto_ComputeDVARS.py @@ -8,11 +8,6 @@ def test_ComputeDVARS_inputs(): figdpi=dict(usedefault=True, ), figformat=dict(usedefault=True, ), figsize=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(mandatory=True, ), in_mask=dict(mandatory=True, ), intensity_normalization=dict(usedefault=True, ), diff --git a/nipype/algorithms/tests/test_auto_ComputeMeshWarp.py b/nipype/algorithms/tests/test_auto_ComputeMeshWarp.py index be9b85e728..0308653786 100644 --- a/nipype/algorithms/tests/test_auto_ComputeMeshWarp.py +++ b/nipype/algorithms/tests/test_auto_ComputeMeshWarp.py @@ -5,11 +5,6 @@ def test_ComputeMeshWarp_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), metric=dict(usedefault=True, ), out_file=dict(usedefault=True, ), out_warp=dict(usedefault=True, ), diff --git a/nipype/algorithms/tests/test_auto_CreateNifti.py b/nipype/algorithms/tests/test_auto_CreateNifti.py index c4ff4a8a59..f8bf8a405f 100644 --- a/nipype/algorithms/tests/test_auto_CreateNifti.py +++ b/nipype/algorithms/tests/test_auto_CreateNifti.py @@ -8,11 +8,6 @@ def test_CreateNifti_inputs(): affine=dict(), data_file=dict(mandatory=True, ), header_file=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) inputs = CreateNifti.input_spec() diff --git a/nipype/algorithms/tests/test_auto_Distance.py b/nipype/algorithms/tests/test_auto_Distance.py index 6d7c9368c0..2c5d098d73 100644 --- a/nipype/algorithms/tests/test_auto_Distance.py +++ b/nipype/algorithms/tests/test_auto_Distance.py @@ -5,11 +5,6 @@ def test_Distance_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mask_volume=dict(), method=dict(usedefault=True, ), volume1=dict(mandatory=True, ), diff --git a/nipype/algorithms/tests/test_auto_FramewiseDisplacement.py b/nipype/algorithms/tests/test_auto_FramewiseDisplacement.py index 9cda94f617..685dec61e8 100644 --- a/nipype/algorithms/tests/test_auto_FramewiseDisplacement.py +++ b/nipype/algorithms/tests/test_auto_FramewiseDisplacement.py @@ -7,11 +7,6 @@ def test_FramewiseDisplacement_inputs(): input_map = dict( figdpi=dict(usedefault=True, ), figsize=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(mandatory=True, ), normalize=dict(usedefault=True, ), out_figure=dict(usedefault=True, ), diff --git a/nipype/algorithms/tests/test_auto_FuzzyOverlap.py b/nipype/algorithms/tests/test_auto_FuzzyOverlap.py index fc8bf79fa9..e9e28aaa44 100644 --- a/nipype/algorithms/tests/test_auto_FuzzyOverlap.py +++ b/nipype/algorithms/tests/test_auto_FuzzyOverlap.py @@ -5,11 +5,6 @@ def test_FuzzyOverlap_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_mask=dict(), in_ref=dict(mandatory=True, ), in_tst=dict(mandatory=True, ), diff --git a/nipype/algorithms/tests/test_auto_Gunzip.py b/nipype/algorithms/tests/test_auto_Gunzip.py index 7be9fd2507..f12e1f9b45 100644 --- a/nipype/algorithms/tests/test_auto_Gunzip.py +++ b/nipype/algorithms/tests/test_auto_Gunzip.py @@ -4,14 +4,7 @@ def test_Gunzip_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - in_file=dict(mandatory=True, ), - ) + input_map = dict(in_file=dict(mandatory=True, ), ) inputs = Gunzip.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/algorithms/tests/test_auto_ICC.py b/nipype/algorithms/tests/test_auto_ICC.py index 7312fcc85e..1a4a2b1517 100644 --- a/nipype/algorithms/tests/test_auto_ICC.py +++ b/nipype/algorithms/tests/test_auto_ICC.py @@ -5,11 +5,6 @@ def test_ICC_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mask=dict(mandatory=True, ), subjects_sessions=dict(mandatory=True, ), ) diff --git a/nipype/algorithms/tests/test_auto_MeshWarpMaths.py b/nipype/algorithms/tests/test_auto_MeshWarpMaths.py index 5c9c04a3c5..f89b16017b 100644 --- a/nipype/algorithms/tests/test_auto_MeshWarpMaths.py +++ b/nipype/algorithms/tests/test_auto_MeshWarpMaths.py @@ -6,11 +6,6 @@ def test_MeshWarpMaths_inputs(): input_map = dict( float_trait=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_surf=dict(mandatory=True, ), operation=dict(usedefault=True, ), operator=dict( diff --git a/nipype/algorithms/tests/test_auto_ModifyAffine.py b/nipype/algorithms/tests/test_auto_ModifyAffine.py index 3b07511e0b..a0c4150a98 100644 --- a/nipype/algorithms/tests/test_auto_ModifyAffine.py +++ b/nipype/algorithms/tests/test_auto_ModifyAffine.py @@ -5,11 +5,6 @@ def test_ModifyAffine_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), transformation_matrix=dict(usedefault=True, ), volumes=dict(mandatory=True, ), ) diff --git a/nipype/algorithms/tests/test_auto_NonSteadyStateDetector.py b/nipype/algorithms/tests/test_auto_NonSteadyStateDetector.py index 436af1fa14..b86fe3df03 100644 --- a/nipype/algorithms/tests/test_auto_NonSteadyStateDetector.py +++ b/nipype/algorithms/tests/test_auto_NonSteadyStateDetector.py @@ -4,14 +4,7 @@ def test_NonSteadyStateDetector_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - in_file=dict(mandatory=True, ), - ) + input_map = dict(in_file=dict(mandatory=True, ), ) inputs = NonSteadyStateDetector.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/algorithms/tests/test_auto_P2PDistance.py b/nipype/algorithms/tests/test_auto_P2PDistance.py index 8175d73be5..9948e3675e 100644 --- a/nipype/algorithms/tests/test_auto_P2PDistance.py +++ b/nipype/algorithms/tests/test_auto_P2PDistance.py @@ -5,11 +5,6 @@ def test_P2PDistance_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), metric=dict(usedefault=True, ), out_file=dict(usedefault=True, ), out_warp=dict(usedefault=True, ), diff --git a/nipype/algorithms/tests/test_auto_PickAtlas.py b/nipype/algorithms/tests/test_auto_PickAtlas.py index 1f2d9f6429..3b15c302e5 100644 --- a/nipype/algorithms/tests/test_auto_PickAtlas.py +++ b/nipype/algorithms/tests/test_auto_PickAtlas.py @@ -8,11 +8,6 @@ def test_PickAtlas_inputs(): atlas=dict(mandatory=True, ), dilation_size=dict(usedefault=True, ), hemi=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), labels=dict(mandatory=True, ), output_file=dict(), ) diff --git a/nipype/algorithms/tests/test_auto_Similarity.py b/nipype/algorithms/tests/test_auto_Similarity.py index 9c82533c13..b2ad79b5eb 100644 --- a/nipype/algorithms/tests/test_auto_Similarity.py +++ b/nipype/algorithms/tests/test_auto_Similarity.py @@ -5,11 +5,6 @@ def test_Similarity_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mask1=dict(), mask2=dict(), metric=dict(usedefault=True, ), diff --git a/nipype/algorithms/tests/test_auto_SimpleThreshold.py b/nipype/algorithms/tests/test_auto_SimpleThreshold.py index 1e7c48c506..4e34d86799 100644 --- a/nipype/algorithms/tests/test_auto_SimpleThreshold.py +++ b/nipype/algorithms/tests/test_auto_SimpleThreshold.py @@ -5,11 +5,6 @@ def test_SimpleThreshold_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), threshold=dict(mandatory=True, ), volumes=dict(mandatory=True, ), ) diff --git a/nipype/algorithms/tests/test_auto_SpecifyModel.py b/nipype/algorithms/tests/test_auto_SpecifyModel.py index 232e6cd740..452a048764 100644 --- a/nipype/algorithms/tests/test_auto_SpecifyModel.py +++ b/nipype/algorithms/tests/test_auto_SpecifyModel.py @@ -14,11 +14,6 @@ def test_SpecifyModel_inputs(): mandatory=True, ), high_pass_filter_cutoff=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_units=dict(mandatory=True, ), outlier_files=dict(copyfile=False, ), parameter_source=dict(usedefault=True, ), diff --git a/nipype/algorithms/tests/test_auto_SpecifySPMModel.py b/nipype/algorithms/tests/test_auto_SpecifySPMModel.py index 2fda43e8fe..1f3ec7058d 100644 --- a/nipype/algorithms/tests/test_auto_SpecifySPMModel.py +++ b/nipype/algorithms/tests/test_auto_SpecifySPMModel.py @@ -15,11 +15,6 @@ def test_SpecifySPMModel_inputs(): mandatory=True, ), high_pass_filter_cutoff=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_units=dict(mandatory=True, ), outlier_files=dict(copyfile=False, ), output_units=dict(usedefault=True, ), diff --git a/nipype/algorithms/tests/test_auto_SpecifySparseModel.py b/nipype/algorithms/tests/test_auto_SpecifySparseModel.py index 6e5ca35b9e..93fc035fc2 100644 --- a/nipype/algorithms/tests/test_auto_SpecifySparseModel.py +++ b/nipype/algorithms/tests/test_auto_SpecifySparseModel.py @@ -14,11 +14,6 @@ def test_SpecifySparseModel_inputs(): mandatory=True, ), high_pass_filter_cutoff=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_units=dict(mandatory=True, ), model_hrf=dict(), outlier_files=dict(copyfile=False, ), diff --git a/nipype/algorithms/tests/test_auto_StimulusCorrelation.py b/nipype/algorithms/tests/test_auto_StimulusCorrelation.py index 4360525990..8c7ef276d9 100644 --- a/nipype/algorithms/tests/test_auto_StimulusCorrelation.py +++ b/nipype/algorithms/tests/test_auto_StimulusCorrelation.py @@ -6,11 +6,6 @@ def test_StimulusCorrelation_inputs(): input_map = dict( concatenated_design=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), intensity_values=dict(mandatory=True, ), realignment_parameters=dict(mandatory=True, ), spm_mat_file=dict(mandatory=True, ), diff --git a/nipype/algorithms/tests/test_auto_TCompCor.py b/nipype/algorithms/tests/test_auto_TCompCor.py index b7a94415a3..44b01b2972 100644 --- a/nipype/algorithms/tests/test_auto_TCompCor.py +++ b/nipype/algorithms/tests/test_auto_TCompCor.py @@ -8,11 +8,6 @@ def test_TCompCor_inputs(): components_file=dict(usedefault=True, ), header_prefix=dict(), high_pass_cutoff=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ignore_initial_volumes=dict(usedefault=True, ), mask_files=dict(), mask_index=dict( diff --git a/nipype/algorithms/tests/test_auto_TVTKBaseInterface.py b/nipype/algorithms/tests/test_auto_TVTKBaseInterface.py index 83980b45b1..9fc2d17aba 100644 --- a/nipype/algorithms/tests/test_auto_TVTKBaseInterface.py +++ b/nipype/algorithms/tests/test_auto_TVTKBaseInterface.py @@ -4,12 +4,7 @@ def test_TVTKBaseInterface_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = TVTKBaseInterface.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/algorithms/tests/test_auto_WarpPoints.py b/nipype/algorithms/tests/test_auto_WarpPoints.py index 7339eef7ba..b6965065a2 100644 --- a/nipype/algorithms/tests/test_auto_WarpPoints.py +++ b/nipype/algorithms/tests/test_auto_WarpPoints.py @@ -5,11 +5,6 @@ def test_WarpPoints_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), interp=dict( mandatory=True, usedefault=True, diff --git a/nipype/interfaces/afni/tests/test_auto_ABoverlap.py b/nipype/interfaces/afni/tests/test_auto_ABoverlap.py index 9c12e12c83..55cb12c27f 100644 --- a/nipype/interfaces/afni/tests/test_auto_ABoverlap.py +++ b/nipype/interfaces/afni/tests/test_auto_ABoverlap.py @@ -10,11 +10,6 @@ def test_ABoverlap_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file_a=dict( argstr='%s', copyfile=False, @@ -38,10 +33,6 @@ def test_ABoverlap_inputs(): ), outputtype=dict(), quiet=dict(argstr='-quiet', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verb=dict(argstr='-verb', ), ) inputs = ABoverlap.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_AFNICommand.py b/nipype/interfaces/afni/tests/test_auto_AFNICommand.py index 3ce91a13fe..724c98dcb2 100644 --- a/nipype/interfaces/afni/tests/test_auto_AFNICommand.py +++ b/nipype/interfaces/afni/tests/test_auto_AFNICommand.py @@ -10,11 +10,6 @@ def test_AFNICommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), num_threads=dict( nohash=True, usedefault=True, @@ -25,10 +20,6 @@ def test_AFNICommand_inputs(): name_template='%s_afni', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AFNICommand.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_AFNICommandBase.py b/nipype/interfaces/afni/tests/test_auto_AFNICommandBase.py index 47f2d86d4b..431baec30b 100644 --- a/nipype/interfaces/afni/tests/test_auto_AFNICommandBase.py +++ b/nipype/interfaces/afni/tests/test_auto_AFNICommandBase.py @@ -10,15 +10,6 @@ def test_AFNICommandBase_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AFNICommandBase.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_AFNIPythonCommand.py b/nipype/interfaces/afni/tests/test_auto_AFNIPythonCommand.py index 388c236cd4..ba2411edfb 100644 --- a/nipype/interfaces/afni/tests/test_auto_AFNIPythonCommand.py +++ b/nipype/interfaces/afni/tests/test_auto_AFNIPythonCommand.py @@ -10,11 +10,6 @@ def test_AFNIPythonCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), num_threads=dict( nohash=True, usedefault=True, @@ -25,10 +20,6 @@ def test_AFNIPythonCommand_inputs(): name_template='%s_afni', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AFNIPythonCommand.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_AFNItoNIFTI.py b/nipype/interfaces/afni/tests/test_auto_AFNItoNIFTI.py index a578d7dede..d89519d571 100644 --- a/nipype/interfaces/afni/tests/test_auto_AFNItoNIFTI.py +++ b/nipype/interfaces/afni/tests/test_auto_AFNItoNIFTI.py @@ -11,11 +11,6 @@ def test_AFNItoNIFTI_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -42,10 +37,6 @@ def test_AFNItoNIFTI_inputs(): ), outputtype=dict(), pure=dict(argstr='-pure', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AFNItoNIFTI.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_AlignEpiAnatPy.py b/nipype/interfaces/afni/tests/test_auto_AlignEpiAnatPy.py index 6f14fb6418..dfbfc648f7 100644 --- a/nipype/interfaces/afni/tests/test_auto_AlignEpiAnatPy.py +++ b/nipype/interfaces/afni/tests/test_auto_AlignEpiAnatPy.py @@ -22,11 +22,6 @@ def test_AlignEpiAnatPy_inputs(): mandatory=True, ), epi_strip=dict(argstr='-epi_strip %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-epi %s', copyfile=False, @@ -39,10 +34,6 @@ def test_AlignEpiAnatPy_inputs(): argstr='-suffix %s', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tshift=dict( argstr='-tshift %s', usedefault=True, diff --git a/nipype/interfaces/afni/tests/test_auto_Allineate.py b/nipype/interfaces/afni/tests/test_auto_Allineate.py index 1c5476a429..be02af14da 100644 --- a/nipype/interfaces/afni/tests/test_auto_Allineate.py +++ b/nipype/interfaces/afni/tests/test_auto_Allineate.py @@ -27,11 +27,6 @@ def test_Allineate_inputs(): epi=dict(argstr='-EPI', ), final_interpolation=dict(argstr='-final %s', ), fine_blur=dict(argstr='-fineblur %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-source %s', copyfile=False, @@ -91,10 +86,6 @@ def test_Allineate_inputs(): replacemeth=dict(argstr='-replacemeth %s', ), source_automask=dict(argstr='-source_automask+%d', ), source_mask=dict(argstr='-source_mask %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), two_best=dict(argstr='-twobest %d', ), two_blur=dict(argstr='-twoblur %f', ), two_first=dict(argstr='-twofirst', ), diff --git a/nipype/interfaces/afni/tests/test_auto_AutoTLRC.py b/nipype/interfaces/afni/tests/test_auto_AutoTLRC.py index 8a2f35f51f..bb00b3b585 100644 --- a/nipype/interfaces/afni/tests/test_auto_AutoTLRC.py +++ b/nipype/interfaces/afni/tests/test_auto_AutoTLRC.py @@ -14,11 +14,6 @@ def test_AutoTLRC_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -26,10 +21,6 @@ def test_AutoTLRC_inputs(): ), no_ss=dict(argstr='-no_ss', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AutoTLRC.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_AutoTcorrelate.py b/nipype/interfaces/afni/tests/test_auto_AutoTcorrelate.py index fc1f477c36..424b7d25b1 100644 --- a/nipype/interfaces/afni/tests/test_auto_AutoTcorrelate.py +++ b/nipype/interfaces/afni/tests/test_auto_AutoTcorrelate.py @@ -11,11 +11,6 @@ def test_AutoTcorrelate_inputs(): usedefault=True, ), eta2=dict(argstr='-eta2', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -42,10 +37,6 @@ def test_AutoTcorrelate_inputs(): ), outputtype=dict(), polort=dict(argstr='-polort %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AutoTcorrelate.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Autobox.py b/nipype/interfaces/afni/tests/test_auto_Autobox.py index 519f5685da..f158263c54 100644 --- a/nipype/interfaces/afni/tests/test_auto_Autobox.py +++ b/nipype/interfaces/afni/tests/test_auto_Autobox.py @@ -10,11 +10,6 @@ def test_Autobox_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -32,10 +27,6 @@ def test_Autobox_inputs(): ), outputtype=dict(), padding=dict(argstr='-npad %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Autobox.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Automask.py b/nipype/interfaces/afni/tests/test_auto_Automask.py index 6ee4cf5f99..efffd19cba 100644 --- a/nipype/interfaces/afni/tests/test_auto_Automask.py +++ b/nipype/interfaces/afni/tests/test_auto_Automask.py @@ -18,11 +18,6 @@ def test_Automask_inputs(): usedefault=True, ), erode=dict(argstr='-erode %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -39,10 +34,6 @@ def test_Automask_inputs(): name_template='%s_mask', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Automask.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Axialize.py b/nipype/interfaces/afni/tests/test_auto_Axialize.py index 80c0231344..62b425c932 100644 --- a/nipype/interfaces/afni/tests/test_auto_Axialize.py +++ b/nipype/interfaces/afni/tests/test_auto_Axialize.py @@ -18,11 +18,6 @@ def test_Axialize_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -44,10 +39,6 @@ def test_Axialize_inputs(): argstr='-sagittal', xor=['coronal', 'axial'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verb=dict(argstr='-verb', ), ) inputs = Axialize.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Bandpass.py b/nipype/interfaces/afni/tests/test_auto_Bandpass.py index 58c57a223a..fb0861a747 100644 --- a/nipype/interfaces/afni/tests/test_auto_Bandpass.py +++ b/nipype/interfaces/afni/tests/test_auto_Bandpass.py @@ -18,11 +18,6 @@ def test_Bandpass_inputs(): mandatory=True, position=-3, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -57,10 +52,6 @@ def test_Bandpass_inputs(): position=1, ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tr=dict(argstr='-dt %f', ), ) inputs = Bandpass.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_BlurInMask.py b/nipype/interfaces/afni/tests/test_auto_BlurInMask.py index 4081ee9894..334116d945 100644 --- a/nipype/interfaces/afni/tests/test_auto_BlurInMask.py +++ b/nipype/interfaces/afni/tests/test_auto_BlurInMask.py @@ -16,11 +16,6 @@ def test_BlurInMask_inputs(): argstr='-FWHM %f', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -45,10 +40,6 @@ def test_BlurInMask_inputs(): ), outputtype=dict(), preserve=dict(argstr='-preserve', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BlurInMask.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_BlurToFWHM.py b/nipype/interfaces/afni/tests/test_auto_BlurToFWHM.py index 114b76d271..2f88a1edcb 100644 --- a/nipype/interfaces/afni/tests/test_auto_BlurToFWHM.py +++ b/nipype/interfaces/afni/tests/test_auto_BlurToFWHM.py @@ -14,11 +14,6 @@ def test_BlurToFWHM_inputs(): ), fwhm=dict(argstr='-FWHM %f', ), fwhmxy=dict(argstr='-FWHMxy %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', mandatory=True, @@ -34,10 +29,6 @@ def test_BlurToFWHM_inputs(): name_template='%s_afni', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BlurToFWHM.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_BrickStat.py b/nipype/interfaces/afni/tests/test_auto_BrickStat.py index 2d81f19b1a..0056df5980 100644 --- a/nipype/interfaces/afni/tests/test_auto_BrickStat.py +++ b/nipype/interfaces/afni/tests/test_auto_BrickStat.py @@ -10,11 +10,6 @@ def test_BrickStat_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -33,10 +28,6 @@ def test_BrickStat_inputs(): percentile=dict(argstr='-percentile %.3f %.3f %.3f', ), slow=dict(argstr='-slow', ), sum=dict(argstr='-sum', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), var=dict(argstr='-var', ), ) inputs = BrickStat.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Bucket.py b/nipype/interfaces/afni/tests/test_auto_Bucket.py index 6a5cb6613c..c3faf87a09 100644 --- a/nipype/interfaces/afni/tests/test_auto_Bucket.py +++ b/nipype/interfaces/afni/tests/test_auto_Bucket.py @@ -10,11 +10,6 @@ def test_Bucket_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -29,10 +24,6 @@ def test_Bucket_inputs(): name_template='buck', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Bucket.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Calc.py b/nipype/interfaces/afni/tests/test_auto_Calc.py index 0a72baffee..28863d5a4b 100644 --- a/nipype/interfaces/afni/tests/test_auto_Calc.py +++ b/nipype/interfaces/afni/tests/test_auto_Calc.py @@ -15,11 +15,6 @@ def test_Calc_inputs(): mandatory=True, position=3, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file_a=dict( argstr='-a %s', mandatory=True, @@ -48,10 +43,6 @@ def test_Calc_inputs(): single_idx=dict(), start_idx=dict(requires=['stop_idx'], ), stop_idx=dict(requires=['start_idx'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Calc.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Cat.py b/nipype/interfaces/afni/tests/test_auto_Cat.py index 2dee8aefa1..3da86c66d6 100644 --- a/nipype/interfaces/afni/tests/test_auto_Cat.py +++ b/nipype/interfaces/afni/tests/test_auto_Cat.py @@ -10,11 +10,6 @@ def test_Cat_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', mandatory=True, @@ -65,10 +60,6 @@ def test_Cat_inputs(): outputtype=dict(), sel=dict(argstr='-sel %s', ), stack=dict(argstr='-stack', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Cat.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_CatMatvec.py b/nipype/interfaces/afni/tests/test_auto_CatMatvec.py index df0ac34e09..b67ab485d4 100644 --- a/nipype/interfaces/afni/tests/test_auto_CatMatvec.py +++ b/nipype/interfaces/afni/tests/test_auto_CatMatvec.py @@ -14,11 +14,6 @@ def test_CatMatvec_inputs(): argstr='-4x4', xor=['matrix', 'oneline'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -45,10 +40,6 @@ def test_CatMatvec_inputs(): position=-1, ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = CatMatvec.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_CenterMass.py b/nipype/interfaces/afni/tests/test_auto_CenterMass.py index 38267a38e9..322218a50d 100644 --- a/nipype/interfaces/afni/tests/test_auto_CenterMass.py +++ b/nipype/interfaces/afni/tests/test_auto_CenterMass.py @@ -20,11 +20,6 @@ def test_CenterMass_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=True, @@ -35,10 +30,6 @@ def test_CenterMass_inputs(): mask_file=dict(argstr='-mask %s', ), roi_vals=dict(argstr='-roi_vals %s', ), set_cm=dict(argstr='-set %f %f %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = CenterMass.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_ClipLevel.py b/nipype/interfaces/afni/tests/test_auto_ClipLevel.py index 6198a48794..8b8c61208d 100644 --- a/nipype/interfaces/afni/tests/test_auto_ClipLevel.py +++ b/nipype/interfaces/afni/tests/test_auto_ClipLevel.py @@ -20,11 +20,6 @@ def test_ClipLevel_inputs(): position=3, xor='doall', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -34,10 +29,6 @@ def test_ClipLevel_inputs(): argstr='-mfrac %s', position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ClipLevel.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_ConvertDset.py b/nipype/interfaces/afni/tests/test_auto_ConvertDset.py index 03739bf972..06ba3a54f2 100644 --- a/nipype/interfaces/afni/tests/test_auto_ConvertDset.py +++ b/nipype/interfaces/afni/tests/test_auto_ConvertDset.py @@ -10,11 +10,6 @@ def test_ConvertDset_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', mandatory=True, @@ -35,10 +30,6 @@ def test_ConvertDset_inputs(): position=0, ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ConvertDset.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Copy.py b/nipype/interfaces/afni/tests/test_auto_Copy.py index 25a460a92d..a8e67d5607 100644 --- a/nipype/interfaces/afni/tests/test_auto_Copy.py +++ b/nipype/interfaces/afni/tests/test_auto_Copy.py @@ -10,11 +10,6 @@ def test_Copy_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -32,10 +27,6 @@ def test_Copy_inputs(): position=-1, ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verb', ), ) inputs = Copy.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Deconvolve.py b/nipype/interfaces/afni/tests/test_auto_Deconvolve.py index 86f1fee093..ae42a77019 100644 --- a/nipype/interfaces/afni/tests/test_auto_Deconvolve.py +++ b/nipype/interfaces/afni/tests/test_auto_Deconvolve.py @@ -37,11 +37,6 @@ def test_Deconvolve_inputs(): position=-2, ), goforit=dict(argstr='-GOFORIT %i', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='-input %s', copyfile=False, @@ -95,10 +90,6 @@ def test_Deconvolve_inputs(): ), stim_times_subtract=dict(argstr='-stim_times_subtract %f', ), svd=dict(argstr='-svd', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tout=dict(argstr='-tout', ), trans=dict( argstr='-trans', diff --git a/nipype/interfaces/afni/tests/test_auto_DegreeCentrality.py b/nipype/interfaces/afni/tests/test_auto_DegreeCentrality.py index 97b76071eb..664cca5985 100644 --- a/nipype/interfaces/afni/tests/test_auto_DegreeCentrality.py +++ b/nipype/interfaces/afni/tests/test_auto_DegreeCentrality.py @@ -12,11 +12,6 @@ def test_DegreeCentrality_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -37,10 +32,6 @@ def test_DegreeCentrality_inputs(): outputtype=dict(), polort=dict(argstr='-polort %d', ), sparsity=dict(argstr='-sparsity %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thresh=dict(argstr='-thresh %f', ), ) inputs = DegreeCentrality.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Despike.py b/nipype/interfaces/afni/tests/test_auto_Despike.py index 078d6072e4..ff0b8b532a 100644 --- a/nipype/interfaces/afni/tests/test_auto_Despike.py +++ b/nipype/interfaces/afni/tests/test_auto_Despike.py @@ -10,11 +10,6 @@ def test_Despike_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -31,10 +26,6 @@ def test_Despike_inputs(): name_template='%s_despike', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Despike.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Detrend.py b/nipype/interfaces/afni/tests/test_auto_Detrend.py index 93bb1f359f..1938529cf7 100644 --- a/nipype/interfaces/afni/tests/test_auto_Detrend.py +++ b/nipype/interfaces/afni/tests/test_auto_Detrend.py @@ -10,11 +10,6 @@ def test_Detrend_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -31,10 +26,6 @@ def test_Detrend_inputs(): name_template='%s_detrend', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Detrend.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Dot.py b/nipype/interfaces/afni/tests/test_auto_Dot.py index 360c44f033..7623e90ca7 100644 --- a/nipype/interfaces/afni/tests/test_auto_Dot.py +++ b/nipype/interfaces/afni/tests/test_auto_Dot.py @@ -18,11 +18,6 @@ def test_Dot_inputs(): usedefault=True, ), full=dict(argstr='-full', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s ...', position=-2, @@ -39,10 +34,6 @@ def test_Dot_inputs(): ), outputtype=dict(), show_labels=dict(argstr='-show_labels', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upper=dict(argstr='-upper', ), ) inputs = Dot.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_ECM.py b/nipype/interfaces/afni/tests/test_auto_ECM.py index f660681cc4..8a4793fb7f 100644 --- a/nipype/interfaces/afni/tests/test_auto_ECM.py +++ b/nipype/interfaces/afni/tests/test_auto_ECM.py @@ -15,11 +15,6 @@ def test_ECM_inputs(): eps=dict(argstr='-eps %f', ), fecm=dict(argstr='-fecm', ), full=dict(argstr='-full', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -43,10 +38,6 @@ def test_ECM_inputs(): scale=dict(argstr='-scale %f', ), shift=dict(argstr='-shift %f', ), sparsity=dict(argstr='-sparsity %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thresh=dict(argstr='-thresh %f', ), ) inputs = ECM.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Edge3.py b/nipype/interfaces/afni/tests/test_auto_Edge3.py index 6271826c63..8fc6953c28 100644 --- a/nipype/interfaces/afni/tests/test_auto_Edge3.py +++ b/nipype/interfaces/afni/tests/test_auto_Edge3.py @@ -19,11 +19,6 @@ def test_Edge3_inputs(): argstr='-gscale', xor=['fscale', 'nscale', 'scale_floats'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -47,10 +42,6 @@ def test_Edge3_inputs(): argstr='-scale_floats %f', xor=['fscale', 'gscale', 'nscale'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verbose', ), ) inputs = Edge3.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Eval.py b/nipype/interfaces/afni/tests/test_auto_Eval.py index 6f1a34f64e..35c1360a6e 100644 --- a/nipype/interfaces/afni/tests/test_auto_Eval.py +++ b/nipype/interfaces/afni/tests/test_auto_Eval.py @@ -15,11 +15,6 @@ def test_Eval_inputs(): mandatory=True, position=3, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file_a=dict( argstr='-a %s', mandatory=True, @@ -48,10 +43,6 @@ def test_Eval_inputs(): single_idx=dict(), start_idx=dict(requires=['stop_idx'], ), stop_idx=dict(requires=['start_idx'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Eval.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_FWHMx.py b/nipype/interfaces/afni/tests/test_auto_FWHMx.py index 3c119e9dcf..14ab26fa4f 100644 --- a/nipype/interfaces/afni/tests/test_auto_FWHMx.py +++ b/nipype/interfaces/afni/tests/test_auto_FWHMx.py @@ -37,11 +37,6 @@ def test_FWHMx_inputs(): argstr='-geom', xor=['arith'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', mandatory=True, @@ -66,10 +61,6 @@ def test_FWHMx_inputs(): name_source='in_file', name_template='%s_subbricks.out', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), unif=dict(argstr='-unif', ), ) inputs = FWHMx.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Fim.py b/nipype/interfaces/afni/tests/test_auto_Fim.py index 5b0dee2656..931e5ff244 100644 --- a/nipype/interfaces/afni/tests/test_auto_Fim.py +++ b/nipype/interfaces/afni/tests/test_auto_Fim.py @@ -19,11 +19,6 @@ def test_Fim_inputs(): mandatory=True, position=2, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -44,10 +39,6 @@ def test_Fim_inputs(): name_template='%s_fim', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Fim.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Fourier.py b/nipype/interfaces/afni/tests/test_auto_Fourier.py index 6f3675dbc1..69cd955cbc 100644 --- a/nipype/interfaces/afni/tests/test_auto_Fourier.py +++ b/nipype/interfaces/afni/tests/test_auto_Fourier.py @@ -14,11 +14,6 @@ def test_Fourier_inputs(): argstr='-highpass %f', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -40,10 +35,6 @@ def test_Fourier_inputs(): ), outputtype=dict(), retrend=dict(argstr='-retrend', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Fourier.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_GCOR.py b/nipype/interfaces/afni/tests/test_auto_GCOR.py index b7163c893a..9d603dda36 100644 --- a/nipype/interfaces/afni/tests/test_auto_GCOR.py +++ b/nipype/interfaces/afni/tests/test_auto_GCOR.py @@ -10,11 +10,6 @@ def test_GCOR_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -27,10 +22,6 @@ def test_GCOR_inputs(): ), nfirst=dict(argstr='-nfirst %d', ), no_demean=dict(argstr='-no_demean', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = GCOR.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Hist.py b/nipype/interfaces/afni/tests/test_auto_Hist.py index 2b9ffe4311..48499a9605 100644 --- a/nipype/interfaces/afni/tests/test_auto_Hist.py +++ b/nipype/interfaces/afni/tests/test_auto_Hist.py @@ -11,11 +11,6 @@ def test_Hist_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -43,10 +38,6 @@ def test_Hist_inputs(): argstr='-showhist', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Hist.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_LFCD.py b/nipype/interfaces/afni/tests/test_auto_LFCD.py index 737ca54002..9cbde10b56 100644 --- a/nipype/interfaces/afni/tests/test_auto_LFCD.py +++ b/nipype/interfaces/afni/tests/test_auto_LFCD.py @@ -12,11 +12,6 @@ def test_LFCD_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -35,10 +30,6 @@ def test_LFCD_inputs(): ), outputtype=dict(), polort=dict(argstr='-polort %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thresh=dict(argstr='-thresh %f', ), ) inputs = LFCD.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_LocalBistat.py b/nipype/interfaces/afni/tests/test_auto_LocalBistat.py index 64ca4c9ebe..22f0b717d8 100644 --- a/nipype/interfaces/afni/tests/test_auto_LocalBistat.py +++ b/nipype/interfaces/afni/tests/test_auto_LocalBistat.py @@ -14,11 +14,6 @@ def test_LocalBistat_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file1=dict( argstr='%s', mandatory=True, @@ -50,10 +45,6 @@ def test_LocalBistat_inputs(): argstr='-stat %s...', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), weight_file=dict( argstr='-weight %s', xor=['automask'], diff --git a/nipype/interfaces/afni/tests/test_auto_MaskTool.py b/nipype/interfaces/afni/tests/test_auto_MaskTool.py index 66ad36e797..1644bee878 100644 --- a/nipype/interfaces/afni/tests/test_auto_MaskTool.py +++ b/nipype/interfaces/afni/tests/test_auto_MaskTool.py @@ -23,11 +23,6 @@ def test_MaskTool_inputs(): ), fill_holes=dict(argstr='-fill_holes', ), frac=dict(argstr='-frac %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -45,10 +40,6 @@ def test_MaskTool_inputs(): name_template='%s_mask', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), union=dict(argstr='-union', ), verbose=dict(argstr='-verb %s', ), ) diff --git a/nipype/interfaces/afni/tests/test_auto_Maskave.py b/nipype/interfaces/afni/tests/test_auto_Maskave.py index d5b8f25abb..a318e685a9 100644 --- a/nipype/interfaces/afni/tests/test_auto_Maskave.py +++ b/nipype/interfaces/afni/tests/test_auto_Maskave.py @@ -10,11 +10,6 @@ def test_Maskave_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -41,10 +36,6 @@ def test_Maskave_inputs(): argstr='-quiet', position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Maskave.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Means.py b/nipype/interfaces/afni/tests/test_auto_Means.py index 466e1e190f..2e422e68db 100644 --- a/nipype/interfaces/afni/tests/test_auto_Means.py +++ b/nipype/interfaces/afni/tests/test_auto_Means.py @@ -12,11 +12,6 @@ def test_Means_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file_a=dict( argstr='%s', mandatory=True, @@ -43,10 +38,6 @@ def test_Means_inputs(): sqr=dict(argstr='-sqr', ), std_dev=dict(argstr='-stdev', ), summ=dict(argstr='-sum', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Means.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Merge.py b/nipype/interfaces/afni/tests/test_auto_Merge.py index 7136d04dfc..c36ee6f7a1 100644 --- a/nipype/interfaces/afni/tests/test_auto_Merge.py +++ b/nipype/interfaces/afni/tests/test_auto_Merge.py @@ -15,11 +15,6 @@ def test_Merge_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', copyfile=False, @@ -36,10 +31,6 @@ def test_Merge_inputs(): name_template='%s_merge', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Merge.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Notes.py b/nipype/interfaces/afni/tests/test_auto_Notes.py index c3a5e1bbaf..965bacb000 100644 --- a/nipype/interfaces/afni/tests/test_auto_Notes.py +++ b/nipype/interfaces/afni/tests/test_auto_Notes.py @@ -16,11 +16,6 @@ def test_Notes_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -38,10 +33,6 @@ def test_Notes_inputs(): xor=['add_history'], ), ses=dict(argstr='-ses', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Notes.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_NwarpAdjust.py b/nipype/interfaces/afni/tests/test_auto_NwarpAdjust.py index cf427dd41a..48b59a2968 100644 --- a/nipype/interfaces/afni/tests/test_auto_NwarpAdjust.py +++ b/nipype/interfaces/afni/tests/test_auto_NwarpAdjust.py @@ -10,11 +10,6 @@ def test_NwarpAdjust_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict(argstr='-source %s', ), num_threads=dict( nohash=True, @@ -28,10 +23,6 @@ def test_NwarpAdjust_inputs(): requires=['in_files'], ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warps=dict( argstr='-nwarp %s', mandatory=True, diff --git a/nipype/interfaces/afni/tests/test_auto_NwarpApply.py b/nipype/interfaces/afni/tests/test_auto_NwarpApply.py index 53aa3c3602..63f6baa044 100644 --- a/nipype/interfaces/afni/tests/test_auto_NwarpApply.py +++ b/nipype/interfaces/afni/tests/test_auto_NwarpApply.py @@ -11,11 +11,6 @@ def test_NwarpApply_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-source %s', mandatory=True, @@ -36,10 +31,6 @@ def test_NwarpApply_inputs(): xor=['verb'], ), short=dict(argstr='-short', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verb=dict( argstr='-verb', xor=['quiet'], diff --git a/nipype/interfaces/afni/tests/test_auto_NwarpCat.py b/nipype/interfaces/afni/tests/test_auto_NwarpCat.py index c904c13246..c6b3689c9e 100644 --- a/nipype/interfaces/afni/tests/test_auto_NwarpCat.py +++ b/nipype/interfaces/afni/tests/test_auto_NwarpCat.py @@ -11,11 +11,6 @@ def test_NwarpCat_inputs(): usedefault=True, ), expad=dict(argstr='-expad %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', mandatory=True, @@ -37,10 +32,6 @@ def test_NwarpCat_inputs(): ), outputtype=dict(), space=dict(argstr='-space %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verb=dict(argstr='-verb', ), ) inputs = NwarpCat.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_OneDToolPy.py b/nipype/interfaces/afni/tests/test_auto_OneDToolPy.py index ec105a96ec..fe037851af 100644 --- a/nipype/interfaces/afni/tests/test_auto_OneDToolPy.py +++ b/nipype/interfaces/afni/tests/test_auto_OneDToolPy.py @@ -14,11 +14,6 @@ def test_OneDToolPy_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-infile %s', mandatory=True, @@ -39,10 +34,6 @@ def test_OneDToolPy_inputs(): show_indices_interest=dict(argstr='-show_indices_interest', ), show_trs_run=dict(argstr='-show_trs_run %d', ), show_trs_uncensored=dict(argstr='-show_trs_uncensored %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = OneDToolPy.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_OutlierCount.py b/nipype/interfaces/afni/tests/test_auto_OutlierCount.py index ce55e7a1ed..a63fbb8bef 100644 --- a/nipype/interfaces/afni/tests/test_auto_OutlierCount.py +++ b/nipype/interfaces/afni/tests/test_auto_OutlierCount.py @@ -24,11 +24,6 @@ def test_OutlierCount_inputs(): argstr='-fraction', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -64,10 +59,6 @@ def test_OutlierCount_inputs(): usedefault=True, ), save_outliers=dict(usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = OutlierCount.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_QualityIndex.py b/nipype/interfaces/afni/tests/test_auto_QualityIndex.py index 2cd76eacfe..679a3e0393 100644 --- a/nipype/interfaces/afni/tests/test_auto_QualityIndex.py +++ b/nipype/interfaces/afni/tests/test_auto_QualityIndex.py @@ -21,11 +21,6 @@ def test_QualityIndex_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -54,10 +49,6 @@ def test_QualityIndex_inputs(): argstr='-spearman', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = QualityIndex.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Qwarp.py b/nipype/interfaces/afni/tests/test_auto_Qwarp.py index 0558fdcd1f..f6df3d0ab5 100644 --- a/nipype/interfaces/afni/tests/test_auto_Qwarp.py +++ b/nipype/interfaces/afni/tests/test_auto_Qwarp.py @@ -59,11 +59,6 @@ def test_Qwarp_inputs(): argstr='-hel', xor=['nmi', 'mi', 'lpc', 'lpa', 'pear'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-source %s', copyfile=False, @@ -141,10 +136,6 @@ def test_Qwarp_inputs(): xor=['verb'], ), resample=dict(argstr='-resample', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verb=dict( argstr='-verb', xor=['quiet'], diff --git a/nipype/interfaces/afni/tests/test_auto_QwarpPlusMinus.py b/nipype/interfaces/afni/tests/test_auto_QwarpPlusMinus.py index 176541d936..2b823cf8af 100644 --- a/nipype/interfaces/afni/tests/test_auto_QwarpPlusMinus.py +++ b/nipype/interfaces/afni/tests/test_auto_QwarpPlusMinus.py @@ -16,11 +16,6 @@ def test_QwarpPlusMinus_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), minpatch=dict(argstr='-minpatch %d', ), nopadWARP=dict(argstr='-nopadWARP', ), noweight=dict(argstr='-noweight', ), @@ -30,10 +25,6 @@ def test_QwarpPlusMinus_inputs(): copyfile=False, mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = QwarpPlusMinus.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_ROIStats.py b/nipype/interfaces/afni/tests/test_auto_ROIStats.py index 1b13234549..57eb59d284 100644 --- a/nipype/interfaces/afni/tests/test_auto_ROIStats.py +++ b/nipype/interfaces/afni/tests/test_auto_ROIStats.py @@ -10,11 +10,6 @@ def test_ROIStats_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -32,10 +27,6 @@ def test_ROIStats_inputs(): argstr='-quiet', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ROIStats.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Refit.py b/nipype/interfaces/afni/tests/test_auto_Refit.py index 5380fa1af9..4983eafc81 100644 --- a/nipype/interfaces/afni/tests/test_auto_Refit.py +++ b/nipype/interfaces/afni/tests/test_auto_Refit.py @@ -16,11 +16,6 @@ def test_Refit_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=True, @@ -30,10 +25,6 @@ def test_Refit_inputs(): nosaveatr=dict(argstr='-nosaveatr', ), saveatr=dict(argstr='-saveatr', ), space=dict(argstr='-space %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xdel=dict(argstr='-xdel %f', ), xorigin=dict(argstr='-xorigin %s', ), xyzscale=dict(argstr='-xyzscale %f', ), diff --git a/nipype/interfaces/afni/tests/test_auto_Remlfit.py b/nipype/interfaces/afni/tests/test_auto_Remlfit.py index 44a04db20f..4cdc8b2ff2 100644 --- a/nipype/interfaces/afni/tests/test_auto_Remlfit.py +++ b/nipype/interfaces/afni/tests/test_auto_Remlfit.py @@ -33,11 +33,6 @@ def test_Remlfit_inputs(): fout=dict(argstr='-fout', ), glt_file=dict(argstr='-Rglt %s', ), gltsym=dict(argstr='-gltsym "%s" %s...', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='-input "%s"', copyfile=False, @@ -80,10 +75,6 @@ def test_Remlfit_inputs(): rout=dict(argstr='-rout', ), slibase=dict(argstr='-slibase %s', ), slibase_sm=dict(argstr='-slibase_sm %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tout=dict(argstr='-tout', ), usetemp=dict(argstr='-usetemp', ), var_file=dict(argstr='-Rvar %s', ), diff --git a/nipype/interfaces/afni/tests/test_auto_Resample.py b/nipype/interfaces/afni/tests/test_auto_Resample.py index 077fe68805..9ab2309307 100644 --- a/nipype/interfaces/afni/tests/test_auto_Resample.py +++ b/nipype/interfaces/afni/tests/test_auto_Resample.py @@ -10,11 +10,6 @@ def test_Resample_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inset %s', copyfile=False, @@ -34,10 +29,6 @@ def test_Resample_inputs(): ), outputtype=dict(), resample_mode=dict(argstr='-rmode %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_size=dict(argstr='-dxyz %f %f %f', ), ) inputs = Resample.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Retroicor.py b/nipype/interfaces/afni/tests/test_auto_Retroicor.py index 1fcab2d471..4c2a1c2393 100644 --- a/nipype/interfaces/afni/tests/test_auto_Retroicor.py +++ b/nipype/interfaces/afni/tests/test_auto_Retroicor.py @@ -19,11 +19,6 @@ def test_Retroicor_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -54,10 +49,6 @@ def test_Retroicor_inputs(): hash_files=False, position=-7, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict( argstr='-threshold %d', position=-4, diff --git a/nipype/interfaces/afni/tests/test_auto_SVMTest.py b/nipype/interfaces/afni/tests/test_auto_SVMTest.py index 709e2fb533..4b31d3a11c 100644 --- a/nipype/interfaces/afni/tests/test_auto_SVMTest.py +++ b/nipype/interfaces/afni/tests/test_auto_SVMTest.py @@ -11,11 +11,6 @@ def test_SVMTest_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-testvol %s', mandatory=True, @@ -37,10 +32,6 @@ def test_SVMTest_inputs(): name_template='%s_predictions', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), testlabels=dict(argstr='-testlabels %s', ), ) inputs = SVMTest.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_SVMTrain.py b/nipype/interfaces/afni/tests/test_auto_SVMTrain.py index 80858d4faa..ddb3f8c05f 100644 --- a/nipype/interfaces/afni/tests/test_auto_SVMTrain.py +++ b/nipype/interfaces/afni/tests/test_auto_SVMTrain.py @@ -17,11 +17,6 @@ def test_SVMTrain_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-trainvol %s', copyfile=False, @@ -53,10 +48,6 @@ def test_SVMTrain_inputs(): suffix='_bucket', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trainlabels=dict(argstr='-trainlabels %s', ), ttype=dict( argstr='-type %s', diff --git a/nipype/interfaces/afni/tests/test_auto_Seg.py b/nipype/interfaces/afni/tests/test_auto_Seg.py index 176eb09501..e93d81a7aa 100644 --- a/nipype/interfaces/afni/tests/test_auto_Seg.py +++ b/nipype/interfaces/afni/tests/test_auto_Seg.py @@ -15,11 +15,6 @@ def test_Seg_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-anat %s', copyfile=True, @@ -35,10 +30,6 @@ def test_Seg_inputs(): mixfloor=dict(argstr='-mixfloor %f', ), mixfrac=dict(argstr='-mixfrac %s', ), prefix=dict(argstr='-prefix %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Seg.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_SkullStrip.py b/nipype/interfaces/afni/tests/test_auto_SkullStrip.py index 8ce7fb8af2..e960369787 100644 --- a/nipype/interfaces/afni/tests/test_auto_SkullStrip.py +++ b/nipype/interfaces/afni/tests/test_auto_SkullStrip.py @@ -10,11 +10,6 @@ def test_SkullStrip_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -31,10 +26,6 @@ def test_SkullStrip_inputs(): name_template='%s_skullstrip', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SkullStrip.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Synthesize.py b/nipype/interfaces/afni/tests/test_auto_Synthesize.py index 921c2a8688..87278098fb 100644 --- a/nipype/interfaces/afni/tests/test_auto_Synthesize.py +++ b/nipype/interfaces/afni/tests/test_auto_Synthesize.py @@ -18,11 +18,6 @@ def test_Synthesize_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matrix=dict( argstr='-matrix %s', copyfile=False, @@ -41,10 +36,6 @@ def test_Synthesize_inputs(): argstr='-select %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Synthesize.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_TCat.py b/nipype/interfaces/afni/tests/test_auto_TCat.py index b0b79166c1..5c51b02637 100644 --- a/nipype/interfaces/afni/tests/test_auto_TCat.py +++ b/nipype/interfaces/afni/tests/test_auto_TCat.py @@ -10,11 +10,6 @@ def test_TCat_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr=' %s', copyfile=False, @@ -35,10 +30,6 @@ def test_TCat_inputs(): argstr='-rlt%s', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verb', ), ) inputs = TCat.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_TCatSubBrick.py b/nipype/interfaces/afni/tests/test_auto_TCatSubBrick.py index 18ebfe6782..09b21ea408 100644 --- a/nipype/interfaces/afni/tests/test_auto_TCatSubBrick.py +++ b/nipype/interfaces/afni/tests/test_auto_TCatSubBrick.py @@ -10,11 +10,6 @@ def test_TCatSubBrick_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s%s ...', copyfile=False, @@ -34,10 +29,6 @@ def test_TCatSubBrick_inputs(): argstr='-rlt%s', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TCatSubBrick.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_TCorr1D.py b/nipype/interfaces/afni/tests/test_auto_TCorr1D.py index a0c5a026ed..e1b23a3387 100644 --- a/nipype/interfaces/afni/tests/test_auto_TCorr1D.py +++ b/nipype/interfaces/afni/tests/test_auto_TCorr1D.py @@ -10,11 +10,6 @@ def test_TCorr1D_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ktaub=dict( argstr=' -ktaub', position=1, @@ -46,10 +41,6 @@ def test_TCorr1D_inputs(): position=1, xor=['pearson', 'quadrant', 'ktaub'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xset=dict( argstr=' %s', copyfile=False, diff --git a/nipype/interfaces/afni/tests/test_auto_TCorrMap.py b/nipype/interfaces/afni/tests/test_auto_TCorrMap.py index de25cd2dc0..32778fcf11 100644 --- a/nipype/interfaces/afni/tests/test_auto_TCorrMap.py +++ b/nipype/interfaces/afni/tests/test_auto_TCorrMap.py @@ -47,11 +47,6 @@ def test_TCorrMap_inputs(): suffix='_hist', ), histogram_bin_numbers=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -99,10 +94,6 @@ def test_TCorrMap_inputs(): suffix='_sexpr', xor=('average_expr', 'average_expr_nonzero', 'sum_expr'), ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thresholds=dict(), var_absolute_threshold=dict( argstr='-VarThresh %f %f %f %s', diff --git a/nipype/interfaces/afni/tests/test_auto_TCorrelate.py b/nipype/interfaces/afni/tests/test_auto_TCorrelate.py index ebea4ff1d9..8d773f429e 100644 --- a/nipype/interfaces/afni/tests/test_auto_TCorrelate.py +++ b/nipype/interfaces/afni/tests/test_auto_TCorrelate.py @@ -10,11 +10,6 @@ def test_TCorrelate_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), num_threads=dict( nohash=True, usedefault=True, @@ -27,10 +22,6 @@ def test_TCorrelate_inputs(): outputtype=dict(), pearson=dict(argstr='-pearson', ), polort=dict(argstr='-polort %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xset=dict( argstr='%s', copyfile=False, diff --git a/nipype/interfaces/afni/tests/test_auto_TNorm.py b/nipype/interfaces/afni/tests/test_auto_TNorm.py index b581134fae..3fb246684b 100644 --- a/nipype/interfaces/afni/tests/test_auto_TNorm.py +++ b/nipype/interfaces/afni/tests/test_auto_TNorm.py @@ -11,11 +11,6 @@ def test_TNorm_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -37,10 +32,6 @@ def test_TNorm_inputs(): ), outputtype=dict(), polort=dict(argstr='-polort %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TNorm.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_TProject.py b/nipype/interfaces/afni/tests/test_auto_TProject.py index ffca499ea5..1fe47a16a5 100644 --- a/nipype/interfaces/afni/tests/test_auto_TProject.py +++ b/nipype/interfaces/afni/tests/test_auto_TProject.py @@ -21,11 +21,6 @@ def test_TProject_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -49,10 +44,6 @@ def test_TProject_inputs(): outputtype=dict(), polort=dict(argstr='-polort %d', ), stopband=dict(argstr='-stopband %g %g', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TProject.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_TShift.py b/nipype/interfaces/afni/tests/test_auto_TShift.py index a1c6acea41..8f9778b92c 100644 --- a/nipype/interfaces/afni/tests/test_auto_TShift.py +++ b/nipype/interfaces/afni/tests/test_auto_TShift.py @@ -11,11 +11,6 @@ def test_TShift_inputs(): usedefault=True, ), ignore=dict(argstr='-ignore %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -35,10 +30,6 @@ def test_TShift_inputs(): outputtype=dict(), rlt=dict(argstr='-rlt', ), rltplus=dict(argstr='-rlt+', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tpattern=dict(argstr='-tpattern %s', ), tr=dict(argstr='-TR %s', ), tslice=dict( diff --git a/nipype/interfaces/afni/tests/test_auto_TStat.py b/nipype/interfaces/afni/tests/test_auto_TStat.py index df10637f54..5a3ebd8a21 100644 --- a/nipype/interfaces/afni/tests/test_auto_TStat.py +++ b/nipype/interfaces/afni/tests/test_auto_TStat.py @@ -10,11 +10,6 @@ def test_TStat_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -33,10 +28,6 @@ def test_TStat_inputs(): name_template='%s_tstat', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TStat.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_To3D.py b/nipype/interfaces/afni/tests/test_auto_To3D.py index e4f14c26f5..66ccabefcb 100644 --- a/nipype/interfaces/afni/tests/test_auto_To3D.py +++ b/nipype/interfaces/afni/tests/test_auto_To3D.py @@ -14,11 +14,6 @@ def test_To3D_inputs(): ), filetype=dict(argstr='-%s', ), funcparams=dict(argstr='-time:zt %s alt+z2', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_folder=dict( argstr='%s/*.dcm', mandatory=True, @@ -35,10 +30,6 @@ def test_To3D_inputs(): ), outputtype=dict(), skipoutliers=dict(argstr='-skip_outliers', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = To3D.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Undump.py b/nipype/interfaces/afni/tests/test_auto_Undump.py index 43cf4f9b2a..07d0ff8e81 100644 --- a/nipype/interfaces/afni/tests/test_auto_Undump.py +++ b/nipype/interfaces/afni/tests/test_auto_Undump.py @@ -15,11 +15,6 @@ def test_Undump_inputs(): ), fill_value=dict(argstr='-fval %f', ), head_only=dict(argstr='-head_only', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-master %s', copyfile=False, @@ -38,10 +33,6 @@ def test_Undump_inputs(): ), outputtype=dict(), srad=dict(argstr='-srad %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Undump.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Unifize.py b/nipype/interfaces/afni/tests/test_auto_Unifize.py index 266dc2ff92..3215d51e64 100644 --- a/nipype/interfaces/afni/tests/test_auto_Unifize.py +++ b/nipype/interfaces/afni/tests/test_auto_Unifize.py @@ -17,11 +17,6 @@ def test_Unifize_inputs(): xor=['gm'], ), gm=dict(argstr='-GM', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-input %s', copyfile=False, @@ -44,10 +39,6 @@ def test_Unifize_inputs(): scale_file=dict(argstr='-ssave %s', ), t2=dict(argstr='-T2', ), t2_up=dict(argstr='-T2up %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), urad=dict(argstr='-Urad %s', ), ) inputs = Unifize.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Volreg.py b/nipype/interfaces/afni/tests/test_auto_Volreg.py index 48a6296d35..293b7613e8 100644 --- a/nipype/interfaces/afni/tests/test_auto_Volreg.py +++ b/nipype/interfaces/afni/tests/test_auto_Volreg.py @@ -15,11 +15,6 @@ def test_Volreg_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -57,10 +52,6 @@ def test_Volreg_inputs(): name_template='%s_volreg', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timeshift=dict(argstr='-tshift 0', ), verbose=dict(argstr='-verbose', ), zpad=dict( diff --git a/nipype/interfaces/afni/tests/test_auto_Warp.py b/nipype/interfaces/afni/tests/test_auto_Warp.py index 442a5de6c7..929b7b7dd4 100644 --- a/nipype/interfaces/afni/tests/test_auto_Warp.py +++ b/nipype/interfaces/afni/tests/test_auto_Warp.py @@ -12,11 +12,6 @@ def test_Warp_inputs(): usedefault=True, ), gridset=dict(argstr='-gridset %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -38,10 +33,6 @@ def test_Warp_inputs(): name_template='%s_warp', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tta2mni=dict(argstr='-tta2mni', ), verbose=dict(argstr='-verb', ), zpad=dict(argstr='-zpad %d', ), diff --git a/nipype/interfaces/afni/tests/test_auto_ZCutUp.py b/nipype/interfaces/afni/tests/test_auto_ZCutUp.py index 3243e9e7a0..cacb6b1534 100644 --- a/nipype/interfaces/afni/tests/test_auto_ZCutUp.py +++ b/nipype/interfaces/afni/tests/test_auto_ZCutUp.py @@ -10,11 +10,6 @@ def test_ZCutUp_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -32,10 +27,6 @@ def test_ZCutUp_inputs(): name_template='%s_zcutup', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ZCutUp.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Zcat.py b/nipype/interfaces/afni/tests/test_auto_Zcat.py index 4a631c6ad6..3a2b7ff853 100644 --- a/nipype/interfaces/afni/tests/test_auto_Zcat.py +++ b/nipype/interfaces/afni/tests/test_auto_Zcat.py @@ -15,11 +15,6 @@ def test_Zcat_inputs(): argstr='-fscale', xor=['nscale'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', copyfile=False, @@ -40,10 +35,6 @@ def test_Zcat_inputs(): name_template='%s_zcat', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verb=dict(argstr='-verb', ), ) inputs = Zcat.input_spec() diff --git a/nipype/interfaces/afni/tests/test_auto_Zeropad.py b/nipype/interfaces/afni/tests/test_auto_Zeropad.py index 669431dbb3..cfba8e2f3c 100644 --- a/nipype/interfaces/afni/tests/test_auto_Zeropad.py +++ b/nipype/interfaces/afni/tests/test_auto_Zeropad.py @@ -46,11 +46,6 @@ def test_Zeropad_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', copyfile=False, @@ -74,10 +69,6 @@ def test_Zeropad_inputs(): name_template='zeropad', ), outputtype=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), z=dict( argstr='-z %i', xor=['master'], diff --git a/nipype/interfaces/ants/tests/test_auto_ANTS.py b/nipype/interfaces/ants/tests/test_auto_ANTS.py index e19c43b4e7..7c7ef6682c 100644 --- a/nipype/interfaces/ants/tests/test_auto_ANTS.py +++ b/nipype/interfaces/ants/tests/test_auto_ANTS.py @@ -18,11 +18,6 @@ def test_ANTS_inputs(): ), fixed_image=dict(mandatory=True, ), gradient_step_length=dict(requires=['transformation_model'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), metric=dict(mandatory=True, ), metric_weight=dict( mandatory=True, @@ -73,10 +68,6 @@ def test_ANTS_inputs(): sep='x', ), symmetry_type=dict(requires=['delta_time'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformation_model=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/ants/tests/test_auto_ANTSCommand.py b/nipype/interfaces/ants/tests/test_auto_ANTSCommand.py index b92f7bc916..7423579ef7 100644 --- a/nipype/interfaces/ants/tests/test_auto_ANTSCommand.py +++ b/nipype/interfaces/ants/tests/test_auto_ANTSCommand.py @@ -10,19 +10,10 @@ def test_ANTSCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), num_threads=dict( nohash=True, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ANTSCommand.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_AffineInitializer.py b/nipype/interfaces/ants/tests/test_auto_AffineInitializer.py index 8a0346aa81..fed21cdbef 100644 --- a/nipype/interfaces/ants/tests/test_auto_AffineInitializer.py +++ b/nipype/interfaces/ants/tests/test_auto_AffineInitializer.py @@ -20,11 +20,6 @@ def test_AffineInitializer_inputs(): mandatory=True, position=1, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), local_search=dict( argstr='%d', position=7, @@ -59,10 +54,6 @@ def test_AffineInitializer_inputs(): position=4, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AffineInitializer.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_AntsJointFusion.py b/nipype/interfaces/ants/tests/test_auto_AntsJointFusion.py index fe84354739..292e6b398b 100644 --- a/nipype/interfaces/ants/tests/test_auto_AntsJointFusion.py +++ b/nipype/interfaces/ants/tests/test_auto_AntsJointFusion.py @@ -36,11 +36,6 @@ def test_AntsJointFusion_inputs(): argstr='-e %s', requires=['exclusion_image'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mask_image=dict(argstr='-x %s', ), num_threads=dict( nohash=True, @@ -82,10 +77,6 @@ def test_AntsJointFusion_inputs(): argstr='-t %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-v', ), ) inputs = AntsJointFusion.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_ApplyTransforms.py b/nipype/interfaces/ants/tests/test_auto_ApplyTransforms.py index c00c068649..c2bbffa14f 100644 --- a/nipype/interfaces/ants/tests/test_auto_ApplyTransforms.py +++ b/nipype/interfaces/ants/tests/test_auto_ApplyTransforms.py @@ -19,11 +19,6 @@ def test_ApplyTransforms_inputs(): argstr='--float %d', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_image=dict( argstr='--input %s', mandatory=True, @@ -50,10 +45,6 @@ def test_ApplyTransforms_inputs(): argstr='--reference-image %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transforms=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/ants/tests/test_auto_ApplyTransformsToPoints.py b/nipype/interfaces/ants/tests/test_auto_ApplyTransformsToPoints.py index 115265d2ce..92c6c21ec1 100644 --- a/nipype/interfaces/ants/tests/test_auto_ApplyTransformsToPoints.py +++ b/nipype/interfaces/ants/tests/test_auto_ApplyTransformsToPoints.py @@ -11,11 +11,6 @@ def test_ApplyTransformsToPoints_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='--input %s', mandatory=True, @@ -31,10 +26,6 @@ def test_ApplyTransformsToPoints_inputs(): name_source=['input_file'], name_template='%s_transformed.csv', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transforms=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/ants/tests/test_auto_Atropos.py b/nipype/interfaces/ants/tests/test_auto_Atropos.py index 11a3a06c16..90bc13778a 100644 --- a/nipype/interfaces/ants/tests/test_auto_Atropos.py +++ b/nipype/interfaces/ants/tests/test_auto_Atropos.py @@ -16,11 +16,6 @@ def test_Atropos_inputs(): usedefault=True, ), icm_use_synchronous_update=dict(argstr='%s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialization=dict( argstr='%s', mandatory=True, @@ -56,10 +51,6 @@ def test_Atropos_inputs(): prior_probability_threshold=dict(requires=['prior_weighting'], ), prior_weighting=dict(), save_posteriors=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), use_mixture_model_proportions=dict( requires=['posterior_formulation'], ), use_random_seed=dict( diff --git a/nipype/interfaces/ants/tests/test_auto_AverageAffineTransform.py b/nipype/interfaces/ants/tests/test_auto_AverageAffineTransform.py index 80bb7a0804..3fe3abe5cf 100644 --- a/nipype/interfaces/ants/tests/test_auto_AverageAffineTransform.py +++ b/nipype/interfaces/ants/tests/test_auto_AverageAffineTransform.py @@ -15,11 +15,6 @@ def test_AverageAffineTransform_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), num_threads=dict( nohash=True, usedefault=True, @@ -29,10 +24,6 @@ def test_AverageAffineTransform_inputs(): mandatory=True, position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transforms=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/ants/tests/test_auto_AverageImages.py b/nipype/interfaces/ants/tests/test_auto_AverageImages.py index bb2e58b508..41e0c99007 100644 --- a/nipype/interfaces/ants/tests/test_auto_AverageImages.py +++ b/nipype/interfaces/ants/tests/test_auto_AverageImages.py @@ -15,11 +15,6 @@ def test_AverageImages_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), images=dict( argstr='%s', mandatory=True, @@ -40,10 +35,6 @@ def test_AverageImages_inputs(): position=1, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AverageImages.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_BrainExtraction.py b/nipype/interfaces/ants/tests/test_auto_BrainExtraction.py index f174c99019..2d48192199 100644 --- a/nipype/interfaces/ants/tests/test_auto_BrainExtraction.py +++ b/nipype/interfaces/ants/tests/test_auto_BrainExtraction.py @@ -29,11 +29,6 @@ def test_BrainExtraction_inputs(): usedefault=True, ), extraction_registration_mask=dict(argstr='-f %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_suffix=dict( argstr='-s %s', usedefault=True, @@ -47,10 +42,6 @@ def test_BrainExtraction_inputs(): argstr='-o %s', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), use_floatingpoint_precision=dict(argstr='-q %d', ), use_random_seeding=dict(argstr='-u %d', ), ) diff --git a/nipype/interfaces/ants/tests/test_auto_ComposeMultiTransform.py b/nipype/interfaces/ants/tests/test_auto_ComposeMultiTransform.py index b164aa0709..83fb2ed2aa 100644 --- a/nipype/interfaces/ants/tests/test_auto_ComposeMultiTransform.py +++ b/nipype/interfaces/ants/tests/test_auto_ComposeMultiTransform.py @@ -15,11 +15,6 @@ def test_ComposeMultiTransform_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), num_threads=dict( nohash=True, usedefault=True, @@ -35,10 +30,6 @@ def test_ComposeMultiTransform_inputs(): argstr='%s', position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transforms=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/ants/tests/test_auto_ConvertScalarImageToRGB.py b/nipype/interfaces/ants/tests/test_auto_ConvertScalarImageToRGB.py index aedd316c75..ea9a16cbe2 100644 --- a/nipype/interfaces/ants/tests/test_auto_ConvertScalarImageToRGB.py +++ b/nipype/interfaces/ants/tests/test_auto_ConvertScalarImageToRGB.py @@ -27,11 +27,6 @@ def test_ConvertScalarImageToRGB_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_image=dict( argstr='%s', mandatory=True, @@ -71,10 +66,6 @@ def test_ConvertScalarImageToRGB_inputs(): position=2, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ConvertScalarImageToRGB.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_CorticalThickness.py b/nipype/interfaces/ants/tests/test_auto_CorticalThickness.py index 6855368a7a..dd39568bc0 100644 --- a/nipype/interfaces/ants/tests/test_auto_CorticalThickness.py +++ b/nipype/interfaces/ants/tests/test_auto_CorticalThickness.py @@ -31,11 +31,6 @@ def test_CorticalThickness_inputs(): usedefault=True, ), extraction_registration_mask=dict(argstr='-f %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_suffix=dict( argstr='-s %s', usedefault=True, @@ -63,10 +58,6 @@ def test_CorticalThickness_inputs(): argstr='-t %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), use_floatingpoint_precision=dict(argstr='-j %d', ), use_random_seeding=dict(argstr='-u %d', ), ) diff --git a/nipype/interfaces/ants/tests/test_auto_CreateJacobianDeterminantImage.py b/nipype/interfaces/ants/tests/test_auto_CreateJacobianDeterminantImage.py index c8acb58593..b32e7b98e0 100644 --- a/nipype/interfaces/ants/tests/test_auto_CreateJacobianDeterminantImage.py +++ b/nipype/interfaces/ants/tests/test_auto_CreateJacobianDeterminantImage.py @@ -19,11 +19,6 @@ def test_CreateJacobianDeterminantImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), imageDimension=dict( argstr='%d', mandatory=True, @@ -38,10 +33,6 @@ def test_CreateJacobianDeterminantImage_inputs(): mandatory=True, position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), useGeometric=dict( argstr='%d', position=4, diff --git a/nipype/interfaces/ants/tests/test_auto_CreateTiledMosaic.py b/nipype/interfaces/ants/tests/test_auto_CreateTiledMosaic.py index 1d6871baa3..74c2b0a7c2 100644 --- a/nipype/interfaces/ants/tests/test_auto_CreateTiledMosaic.py +++ b/nipype/interfaces/ants/tests/test_auto_CreateTiledMosaic.py @@ -13,11 +13,6 @@ def test_CreateTiledMosaic_inputs(): usedefault=True, ), flip_slice=dict(argstr='-f %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_image=dict( argstr='-i %s', mandatory=True, @@ -38,10 +33,6 @@ def test_CreateTiledMosaic_inputs(): mandatory=True, ), slices=dict(argstr='-s %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tile_geometry=dict(argstr='-t %s', ), ) inputs = CreateTiledMosaic.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_DenoiseImage.py b/nipype/interfaces/ants/tests/test_auto_DenoiseImage.py index 8a69113eff..882cb21854 100644 --- a/nipype/interfaces/ants/tests/test_auto_DenoiseImage.py +++ b/nipype/interfaces/ants/tests/test_auto_DenoiseImage.py @@ -11,11 +11,6 @@ def test_DenoiseImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_image=dict( argstr='-i %s', mandatory=True, @@ -50,10 +45,6 @@ def test_DenoiseImage_inputs(): argstr='-s %s', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-v', ), ) inputs = DenoiseImage.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_GenWarpFields.py b/nipype/interfaces/ants/tests/test_auto_GenWarpFields.py index c1669f38e5..af91f9a8af 100644 --- a/nipype/interfaces/ants/tests/test_auto_GenWarpFields.py +++ b/nipype/interfaces/ants/tests/test_auto_GenWarpFields.py @@ -17,11 +17,6 @@ def test_GenWarpFields_inputs(): usedefault=True, ), force_proceed=dict(argstr='-f 1', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_image=dict( argstr='-i %s', copyfile=False, @@ -47,10 +42,6 @@ def test_GenWarpFields_inputs(): mandatory=True, ), similarity_metric=dict(argstr='-s %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformation_model=dict( argstr='-t %s', usedefault=True, diff --git a/nipype/interfaces/ants/tests/test_auto_JointFusion.py b/nipype/interfaces/ants/tests/test_auto_JointFusion.py index 3dcd63dfdc..9e82584729 100644 --- a/nipype/interfaces/ants/tests/test_auto_JointFusion.py +++ b/nipype/interfaces/ants/tests/test_auto_JointFusion.py @@ -27,11 +27,6 @@ def test_JointFusion_inputs(): usedefault=True, ), exclusion_region=dict(argstr='-x %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), method=dict( argstr='-m %s', usedefault=True, @@ -66,10 +61,6 @@ def test_JointFusion_inputs(): argstr='-tg %s...', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warped_intensity_images=dict( argstr='-g %s...', mandatory=True, diff --git a/nipype/interfaces/ants/tests/test_auto_KellyKapowski.py b/nipype/interfaces/ants/tests/test_auto_KellyKapowski.py index 1bff8a1aa3..6129670d39 100644 --- a/nipype/interfaces/ants/tests/test_auto_KellyKapowski.py +++ b/nipype/interfaces/ants/tests/test_auto_KellyKapowski.py @@ -32,11 +32,6 @@ def test_KellyKapowski_inputs(): gray_matter_label=dict(usedefault=True, ), gray_matter_prob_image=dict( argstr='--gray-matter-probability-image "%s"', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), max_invert_displacement_field_iters=dict( argstr= '--maximum-number-of-invert-displacement-field-iterations %d', @@ -62,10 +57,6 @@ def test_KellyKapowski_inputs(): argstr='--smoothing-velocity-field-parameter %f', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thickness_prior_estimate=dict( argstr='--thickness-prior-estimate %f', usedefault=True, diff --git a/nipype/interfaces/ants/tests/test_auto_LabelGeometry.py b/nipype/interfaces/ants/tests/test_auto_LabelGeometry.py index 1a8ef63f44..a5de244711 100644 --- a/nipype/interfaces/ants/tests/test_auto_LabelGeometry.py +++ b/nipype/interfaces/ants/tests/test_auto_LabelGeometry.py @@ -15,11 +15,6 @@ def test_LabelGeometry_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), intensity_image=dict( argstr='%s', mandatory=True, @@ -41,10 +36,6 @@ def test_LabelGeometry_inputs(): name_template='%s.csv', position=3, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = LabelGeometry.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_LaplacianThickness.py b/nipype/interfaces/ants/tests/test_auto_LaplacianThickness.py index c1d496f4c6..8f9a13d832 100644 --- a/nipype/interfaces/ants/tests/test_auto_LaplacianThickness.py +++ b/nipype/interfaces/ants/tests/test_auto_LaplacianThickness.py @@ -14,11 +14,6 @@ def test_LaplacianThickness_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_gm=dict( argstr='%s', copyfile=True, @@ -57,10 +52,6 @@ def test_LaplacianThickness_inputs(): argstr='use-sulcus-prior', position=7, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = LaplacianThickness.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_MeasureImageSimilarity.py b/nipype/interfaces/ants/tests/test_auto_MeasureImageSimilarity.py index cd03ec4b05..1a5041ae74 100644 --- a/nipype/interfaces/ants/tests/test_auto_MeasureImageSimilarity.py +++ b/nipype/interfaces/ants/tests/test_auto_MeasureImageSimilarity.py @@ -16,11 +16,6 @@ def test_MeasureImageSimilarity_inputs(): ), fixed_image=dict(mandatory=True, ), fixed_image_mask=dict(argstr='%s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), metric=dict( argstr='%s', mandatory=True, @@ -47,10 +42,6 @@ def test_MeasureImageSimilarity_inputs(): requires=['metric'], usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MeasureImageSimilarity.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_MultiplyImages.py b/nipype/interfaces/ants/tests/test_auto_MultiplyImages.py index 08488ce72b..1bf787018d 100644 --- a/nipype/interfaces/ants/tests/test_auto_MultiplyImages.py +++ b/nipype/interfaces/ants/tests/test_auto_MultiplyImages.py @@ -20,11 +20,6 @@ def test_MultiplyImages_inputs(): mandatory=True, position=1, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), num_threads=dict( nohash=True, usedefault=True, @@ -39,10 +34,6 @@ def test_MultiplyImages_inputs(): mandatory=True, position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MultiplyImages.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_N4BiasFieldCorrection.py b/nipype/interfaces/ants/tests/test_auto_N4BiasFieldCorrection.py index cc76720ec7..66edf0c3d6 100644 --- a/nipype/interfaces/ants/tests/test_auto_N4BiasFieldCorrection.py +++ b/nipype/interfaces/ants/tests/test_auto_N4BiasFieldCorrection.py @@ -22,11 +22,6 @@ def test_N4BiasFieldCorrection_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_image=dict( argstr='--input-image %s', mandatory=True, @@ -48,10 +43,6 @@ def test_N4BiasFieldCorrection_inputs(): xor=['bias_image'], ), shrink_factor=dict(argstr='--shrink-factor %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), weight_image=dict(argstr='--weight-image %s', ), ) inputs = N4BiasFieldCorrection.input_spec() diff --git a/nipype/interfaces/ants/tests/test_auto_Registration.py b/nipype/interfaces/ants/tests/test_auto_Registration.py index d3129bb559..4bd253c3d0 100644 --- a/nipype/interfaces/ants/tests/test_auto_Registration.py +++ b/nipype/interfaces/ants/tests/test_auto_Registration.py @@ -37,11 +37,6 @@ def test_Registration_inputs(): xor=['fixed_image_mask'], ), float=dict(argstr='--float %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initial_moving_transform=dict( argstr='%s', xor=['initial_moving_transform_com'], @@ -115,10 +110,6 @@ def test_Registration_inputs(): shrink_factors=dict(mandatory=True, ), sigma_units=dict(requires=['smoothing_sigmas'], ), smoothing_sigmas=dict(mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform_parameters=dict(), transforms=dict( argstr='%s', diff --git a/nipype/interfaces/ants/tests/test_auto_RegistrationSynQuick.py b/nipype/interfaces/ants/tests/test_auto_RegistrationSynQuick.py index dadf894e49..8bc79392e1 100644 --- a/nipype/interfaces/ants/tests/test_auto_RegistrationSynQuick.py +++ b/nipype/interfaces/ants/tests/test_auto_RegistrationSynQuick.py @@ -22,11 +22,6 @@ def test_RegistrationSynQuick_inputs(): argstr='-r %d', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), moving_image=dict( argstr='-m %s...', mandatory=True, @@ -47,10 +42,6 @@ def test_RegistrationSynQuick_inputs(): argstr='-s %d', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform_type=dict( argstr='-t %s', usedefault=True, diff --git a/nipype/interfaces/ants/tests/test_auto_WarpImageMultiTransform.py b/nipype/interfaces/ants/tests/test_auto_WarpImageMultiTransform.py index 16d2e47a04..42020f6db9 100644 --- a/nipype/interfaces/ants/tests/test_auto_WarpImageMultiTransform.py +++ b/nipype/interfaces/ants/tests/test_auto_WarpImageMultiTransform.py @@ -15,11 +15,6 @@ def test_WarpImageMultiTransform_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_image=dict( argstr='%s', mandatory=True, @@ -47,10 +42,6 @@ def test_WarpImageMultiTransform_inputs(): xor=['tightest_box'], ), reslice_by_header=dict(argstr='--reslice-by-header', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tightest_box=dict( argstr='--tightest-bounding-box', xor=['reference_image'], diff --git a/nipype/interfaces/ants/tests/test_auto_WarpTimeSeriesImageMultiTransform.py b/nipype/interfaces/ants/tests/test_auto_WarpTimeSeriesImageMultiTransform.py index 4715bcf156..de3131f056 100644 --- a/nipype/interfaces/ants/tests/test_auto_WarpTimeSeriesImageMultiTransform.py +++ b/nipype/interfaces/ants/tests/test_auto_WarpTimeSeriesImageMultiTransform.py @@ -15,11 +15,6 @@ def test_WarpTimeSeriesImageMultiTransform_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_image=dict( argstr='%s', copyfile=True, @@ -39,10 +34,6 @@ def test_WarpTimeSeriesImageMultiTransform_inputs(): xor=['tightest_box'], ), reslice_by_header=dict(argstr='--reslice-by-header', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tightest_box=dict( argstr='--tightest-bounding-box', xor=['reference_image'], diff --git a/nipype/interfaces/ants/tests/test_auto_antsIntroduction.py b/nipype/interfaces/ants/tests/test_auto_antsIntroduction.py index bb5fd19e73..fe21858500 100644 --- a/nipype/interfaces/ants/tests/test_auto_antsIntroduction.py +++ b/nipype/interfaces/ants/tests/test_auto_antsIntroduction.py @@ -17,11 +17,6 @@ def test_antsIntroduction_inputs(): usedefault=True, ), force_proceed=dict(argstr='-f 1', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_image=dict( argstr='-i %s', copyfile=False, @@ -47,10 +42,6 @@ def test_antsIntroduction_inputs(): mandatory=True, ), similarity_metric=dict(argstr='-s %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformation_model=dict( argstr='-t %s', usedefault=True, diff --git a/nipype/interfaces/ants/tests/test_auto_buildtemplateparallel.py b/nipype/interfaces/ants/tests/test_auto_buildtemplateparallel.py index 5e732f6bb9..8513003c29 100644 --- a/nipype/interfaces/ants/tests/test_auto_buildtemplateparallel.py +++ b/nipype/interfaces/ants/tests/test_auto_buildtemplateparallel.py @@ -17,11 +17,6 @@ def test_buildtemplateparallel_inputs(): usedefault=True, ), gradient_step_size=dict(argstr='-g %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', mandatory=True, @@ -53,10 +48,6 @@ def test_buildtemplateparallel_inputs(): ), rigid_body_registration=dict(argstr='-r 1', ), similarity_metric=dict(argstr='-s %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformation_model=dict( argstr='-t %s', usedefault=True, diff --git a/nipype/interfaces/base/tests/test_auto_BaseInterface.py b/nipype/interfaces/base/tests/test_auto_BaseInterface.py index 562fc9dd52..eb0272d495 100644 --- a/nipype/interfaces/base/tests/test_auto_BaseInterface.py +++ b/nipype/interfaces/base/tests/test_auto_BaseInterface.py @@ -4,12 +4,7 @@ def test_BaseInterface_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = BaseInterface.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/base/tests/test_auto_CommandLine.py b/nipype/interfaces/base/tests/test_auto_CommandLine.py index 6a247000d5..fb16422864 100644 --- a/nipype/interfaces/base/tests/test_auto_CommandLine.py +++ b/nipype/interfaces/base/tests/test_auto_CommandLine.py @@ -10,15 +10,6 @@ def test_CommandLine_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = CommandLine.input_spec() diff --git a/nipype/interfaces/base/tests/test_auto_LibraryBaseInterface.py b/nipype/interfaces/base/tests/test_auto_LibraryBaseInterface.py index c624c7d9d0..19beef071f 100644 --- a/nipype/interfaces/base/tests/test_auto_LibraryBaseInterface.py +++ b/nipype/interfaces/base/tests/test_auto_LibraryBaseInterface.py @@ -4,12 +4,7 @@ def test_LibraryBaseInterface_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = LibraryBaseInterface.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/base/tests/test_auto_MpiCommandLine.py b/nipype/interfaces/base/tests/test_auto_MpiCommandLine.py index 7a8fc298db..2d66f2f623 100644 --- a/nipype/interfaces/base/tests/test_auto_MpiCommandLine.py +++ b/nipype/interfaces/base/tests/test_auto_MpiCommandLine.py @@ -10,16 +10,7 @@ def test_MpiCommandLine_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), n_procs=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), use_mpi=dict(usedefault=True, ), ) inputs = MpiCommandLine.input_spec() diff --git a/nipype/interfaces/base/tests/test_auto_SEMLikeCommandLine.py b/nipype/interfaces/base/tests/test_auto_SEMLikeCommandLine.py index b86153fc75..aceabfe2a2 100644 --- a/nipype/interfaces/base/tests/test_auto_SEMLikeCommandLine.py +++ b/nipype/interfaces/base/tests/test_auto_SEMLikeCommandLine.py @@ -10,15 +10,6 @@ def test_SEMLikeCommandLine_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SEMLikeCommandLine.input_spec() diff --git a/nipype/interfaces/base/tests/test_auto_SimpleInterface.py b/nipype/interfaces/base/tests/test_auto_SimpleInterface.py index 94a2858f88..2a4454dd9f 100644 --- a/nipype/interfaces/base/tests/test_auto_SimpleInterface.py +++ b/nipype/interfaces/base/tests/test_auto_SimpleInterface.py @@ -4,12 +4,7 @@ def test_SimpleInterface_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = SimpleInterface.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/base/tests/test_auto_StdOutCommandLine.py b/nipype/interfaces/base/tests/test_auto_StdOutCommandLine.py index 69e324be86..e39dc3acaa 100644 --- a/nipype/interfaces/base/tests/test_auto_StdOutCommandLine.py +++ b/nipype/interfaces/base/tests/test_auto_StdOutCommandLine.py @@ -10,20 +10,11 @@ def test_StdOutCommandLine_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), out_file=dict( argstr='> %s', genfile=True, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = StdOutCommandLine.input_spec() diff --git a/nipype/interfaces/brainsuite/tests/test_auto_BDP.py b/nipype/interfaces/brainsuite/tests/test_auto_BDP.py index 0160d9c709..ff705edfeb 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_BDP.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_BDP.py @@ -55,11 +55,6 @@ def test_BDP_inputs(): generateStats=dict(argstr='--generate-stats', ), ignoreFieldmapFOV=dict(argstr='--ignore-fieldmap-fov', ), ignoreMemory=dict(argstr='--ignore-memory', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputDiffusionData=dict( argstr='--nii %s', mandatory=True, @@ -87,10 +82,6 @@ def test_BDP_inputs(): ), skipNonuniformityCorr=dict(argstr='--no-nonuniformity-correction', ), t1Mask=dict(argstr='--t1-mask %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threads=dict(argstr='--threads=%d', ), transformDataOnly=dict(argstr='--transform-data-only', ), transformDiffusionSurface=dict( diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Bfc.py b/nipype/interfaces/brainsuite/tests/test_auto_Bfc.py index 99641db850..01200e50fc 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Bfc.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Bfc.py @@ -21,11 +21,6 @@ def test_Bfc_inputs(): ), histogramRadius=dict(argstr='-r %d', ), histogramType=dict(argstr='%s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMRIFile=dict( argstr='-i %s', mandatory=True, @@ -58,10 +53,6 @@ def test_Bfc_inputs(): hash_files=False, ), splineLambda=dict(argstr='-w %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timer=dict(argstr='--timer', ), verbosityLevel=dict(argstr='-v %d', ), ) diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Bse.py b/nipype/interfaces/brainsuite/tests/test_auto_Bse.py index 9483e72266..bbd154bc24 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Bse.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Bse.py @@ -26,11 +26,6 @@ def test_Bse_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMRIFile=dict( argstr='-i %s', mandatory=True, @@ -66,10 +61,6 @@ def test_Bse_inputs(): argstr='-r %f', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timer=dict(argstr='--timer', ), trim=dict( argstr='--trim', diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Cerebro.py b/nipype/interfaces/brainsuite/tests/test_auto_Cerebro.py index 3b66172e7a..808e4347c3 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Cerebro.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Cerebro.py @@ -14,11 +14,6 @@ def test_Cerebro_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputAtlasLabelFile=dict( argstr='--atlaslabels %s', mandatory=True, @@ -52,10 +47,6 @@ def test_Cerebro_inputs(): ), tempDirectory=dict(argstr='--tempdir %s', ), tempDirectoryBase=dict(argstr='--tempdirbase %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), useCentroids=dict(argstr='--centroids', ), verbosity=dict(argstr='-v %d', ), warpConvergence=dict(argstr='--warpconv %f', ), diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Cortex.py b/nipype/interfaces/brainsuite/tests/test_auto_Cortex.py index 74288d931b..536cb158f2 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Cortex.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Cortex.py @@ -15,11 +15,6 @@ def test_Cortex_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), includeAllSubcorticalAreas=dict( argstr='-a', usedefault=True, @@ -36,10 +31,6 @@ def test_Cortex_inputs(): argstr='-o %s', genfile=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timer=dict(argstr='--timer', ), tissueFractionThreshold=dict( argstr='-p %f', diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Dewisp.py b/nipype/interfaces/brainsuite/tests/test_auto_Dewisp.py index dd1800782b..ba430fb1fd 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Dewisp.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Dewisp.py @@ -10,11 +10,6 @@ def test_Dewisp_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMaskFile=dict( argstr='-i %s', mandatory=True, @@ -25,10 +20,6 @@ def test_Dewisp_inputs(): genfile=True, ), sizeThreshold=dict(argstr='-t %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timer=dict(argstr='--timer', ), verbosity=dict(argstr='-v %d', ), ) diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Dfs.py b/nipype/interfaces/brainsuite/tests/test_auto_Dfs.py index 964d05575c..c69232fd01 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Dfs.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Dfs.py @@ -14,11 +14,6 @@ def test_Dfs_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputShadingVolume=dict(argstr='-c %s', ), inputVolumeFile=dict( argstr='-i %s', @@ -49,10 +44,6 @@ def test_Dfs_inputs(): requires=['tessellationThreshold'], xor=('nonZeroTessellation', 'specialTessellation'), ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tessellationThreshold=dict(argstr='%f', ), timer=dict(argstr='--timer', ), verbosity=dict(argstr='-v %d', ), diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Hemisplit.py b/nipype/interfaces/brainsuite/tests/test_auto_Hemisplit.py index e5d30a6c94..9e3db80dd9 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Hemisplit.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Hemisplit.py @@ -10,11 +10,6 @@ def test_Hemisplit_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputHemisphereLabelFile=dict( argstr='-l %s', mandatory=True, @@ -40,10 +35,6 @@ def test_Hemisplit_inputs(): genfile=True, ), pialSurfaceFile=dict(argstr='-p %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timer=dict(argstr='--timer', ), verbosity=dict(argstr='-v %d', ), ) diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Pialmesh.py b/nipype/interfaces/brainsuite/tests/test_auto_Pialmesh.py index 637da5add5..afc621a56e 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Pialmesh.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Pialmesh.py @@ -11,11 +11,6 @@ def test_Pialmesh_inputs(): usedefault=True, ), exportPrefix=dict(argstr='--prefix %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMaskFile=dict( argstr='-m %s', mandatory=True, @@ -62,10 +57,6 @@ def test_Pialmesh_inputs(): usedefault=True, ), tangentSmoother=dict(argstr='--tc %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timer=dict(argstr='--timer', ), tissueThreshold=dict( argstr='-t %f', diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Pvc.py b/nipype/interfaces/brainsuite/tests/test_auto_Pvc.py index 28efe8bd21..d425d4ddac 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Pvc.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Pvc.py @@ -10,11 +10,6 @@ def test_Pvc_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMRIFile=dict( argstr='-i %s', mandatory=True, @@ -29,10 +24,6 @@ def test_Pvc_inputs(): genfile=True, ), spatialPrior=dict(argstr='-l %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threeClassFlag=dict(argstr='-3', ), timer=dict(argstr='--timer', ), verbosity=dict(argstr='-v %d', ), diff --git a/nipype/interfaces/brainsuite/tests/test_auto_SVReg.py b/nipype/interfaces/brainsuite/tests/test_auto_SVReg.py index 8d93f3d12c..7449e1488a 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_SVReg.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_SVReg.py @@ -18,11 +18,6 @@ def test_SVReg_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), iterations=dict(argstr="'-H %d'", ), keepIntermediates=dict(argstr="'-k'", ), pialSurfaceMaskDilation=dict(argstr="'-D %d'", ), @@ -36,10 +31,6 @@ def test_SVReg_inputs(): mandatory=True, position=0, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), useCerebrumMask=dict(argstr="'-C'", ), useManualMaskFile=dict(argstr="'-cbm'", ), useMultiThreading=dict(argstr="'-P'", ), diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Scrubmask.py b/nipype/interfaces/brainsuite/tests/test_auto_Scrubmask.py index f055426fa3..eb672d12b7 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Scrubmask.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Scrubmask.py @@ -18,11 +18,6 @@ def test_Scrubmask_inputs(): argstr='-f %d', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMaskFile=dict( argstr='-i %s', mandatory=True, @@ -32,10 +27,6 @@ def test_Scrubmask_inputs(): argstr='-o %s', genfile=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timer=dict(argstr='--timer', ), verbosity=dict(argstr='-v %d', ), ) diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Skullfinder.py b/nipype/interfaces/brainsuite/tests/test_auto_Skullfinder.py index 6954826288..2191f7b133 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Skullfinder.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Skullfinder.py @@ -12,11 +12,6 @@ def test_Skullfinder_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMRIFile=dict( argstr='-i %s', mandatory=True, @@ -35,10 +30,6 @@ def test_Skullfinder_inputs(): skullLabelValue=dict(argstr='--skulllabel %d', ), spaceLabelValue=dict(argstr='--spacelabel %d', ), surfaceFilePrefix=dict(argstr='-s %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upperThreshold=dict(argstr='-u %d', ), verbosity=dict(argstr='-v %d', ), ) diff --git a/nipype/interfaces/brainsuite/tests/test_auto_Tca.py b/nipype/interfaces/brainsuite/tests/test_auto_Tca.py index be55e4d72a..ec2886b42f 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_Tca.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_Tca.py @@ -14,11 +14,6 @@ def test_Tca_inputs(): argstr='--delta %d', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMaskFile=dict( argstr='-i %s', mandatory=True, @@ -32,10 +27,6 @@ def test_Tca_inputs(): argstr='-o %s', genfile=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timer=dict(argstr='--timer', ), verbosity=dict(argstr='-v %d', ), ) diff --git a/nipype/interfaces/brainsuite/tests/test_auto_ThicknessPVC.py b/nipype/interfaces/brainsuite/tests/test_auto_ThicknessPVC.py index a79d0a7f85..d614ce335a 100644 --- a/nipype/interfaces/brainsuite/tests/test_auto_ThicknessPVC.py +++ b/nipype/interfaces/brainsuite/tests/test_auto_ThicknessPVC.py @@ -10,19 +10,10 @@ def test_ThicknessPVC_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), subjectFilePrefix=dict( argstr='%s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ThicknessPVC.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_AnalyzeHeader.py b/nipype/interfaces/camino/tests/test_auto_AnalyzeHeader.py index 7ed97f05c4..5d796126cc 100644 --- a/nipype/interfaces/camino/tests/test_auto_AnalyzeHeader.py +++ b/nipype/interfaces/camino/tests/test_auto_AnalyzeHeader.py @@ -27,11 +27,6 @@ def test_AnalyzeHeader_inputs(): argstr='-gl %s', units='NA', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='< %s', mandatory=True, @@ -92,10 +87,6 @@ def test_AnalyzeHeader_inputs(): argstr='%s', position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_dims=dict( argstr='-voxeldims %s', units='mm', diff --git a/nipype/interfaces/camino/tests/test_auto_ComputeEigensystem.py b/nipype/interfaces/camino/tests/test_auto_ComputeEigensystem.py index 8639947361..caee9e68cf 100644 --- a/nipype/interfaces/camino/tests/test_auto_ComputeEigensystem.py +++ b/nipype/interfaces/camino/tests/test_auto_ComputeEigensystem.py @@ -10,11 +10,6 @@ def test_ComputeEigensystem_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='< %s', mandatory=True, @@ -35,10 +30,6 @@ def test_ComputeEigensystem_inputs(): argstr='-outputdatatype %s', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ComputeEigensystem.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_ComputeFractionalAnisotropy.py b/nipype/interfaces/camino/tests/test_auto_ComputeFractionalAnisotropy.py index 4403f11d19..49cfdfd96a 100644 --- a/nipype/interfaces/camino/tests/test_auto_ComputeFractionalAnisotropy.py +++ b/nipype/interfaces/camino/tests/test_auto_ComputeFractionalAnisotropy.py @@ -10,11 +10,6 @@ def test_ComputeFractionalAnisotropy_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='< %s', mandatory=True, @@ -32,10 +27,6 @@ def test_ComputeFractionalAnisotropy_inputs(): argstr='%s', position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ComputeFractionalAnisotropy.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_ComputeMeanDiffusivity.py b/nipype/interfaces/camino/tests/test_auto_ComputeMeanDiffusivity.py index 83859ff6cd..212477d149 100644 --- a/nipype/interfaces/camino/tests/test_auto_ComputeMeanDiffusivity.py +++ b/nipype/interfaces/camino/tests/test_auto_ComputeMeanDiffusivity.py @@ -10,11 +10,6 @@ def test_ComputeMeanDiffusivity_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='< %s', mandatory=True, @@ -32,10 +27,6 @@ def test_ComputeMeanDiffusivity_inputs(): argstr='%s', position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ComputeMeanDiffusivity.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_ComputeTensorTrace.py b/nipype/interfaces/camino/tests/test_auto_ComputeTensorTrace.py index fd5bf2dab0..1112c7c743 100644 --- a/nipype/interfaces/camino/tests/test_auto_ComputeTensorTrace.py +++ b/nipype/interfaces/camino/tests/test_auto_ComputeTensorTrace.py @@ -10,11 +10,6 @@ def test_ComputeTensorTrace_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='< %s', mandatory=True, @@ -32,10 +27,6 @@ def test_ComputeTensorTrace_inputs(): argstr='%s', position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ComputeTensorTrace.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_Conmat.py b/nipype/interfaces/camino/tests/test_auto_Conmat.py index dd1e64c1cc..06a76fdf2b 100644 --- a/nipype/interfaces/camino/tests/test_auto_Conmat.py +++ b/nipype/interfaces/camino/tests/test_auto_Conmat.py @@ -10,11 +10,6 @@ def test_Conmat_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', mandatory=True, @@ -32,10 +27,6 @@ def test_Conmat_inputs(): mandatory=True, ), targetname_file=dict(argstr='-targetnamefile %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tract_prop=dict( argstr='-tractstat %s', units='NA', diff --git a/nipype/interfaces/camino/tests/test_auto_DT2NIfTI.py b/nipype/interfaces/camino/tests/test_auto_DT2NIfTI.py index 98c6f77b96..b20dcbf3bf 100644 --- a/nipype/interfaces/camino/tests/test_auto_DT2NIfTI.py +++ b/nipype/interfaces/camino/tests/test_auto_DT2NIfTI.py @@ -15,11 +15,6 @@ def test_DT2NIfTI_inputs(): mandatory=True, position=3, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', mandatory=True, @@ -30,10 +25,6 @@ def test_DT2NIfTI_inputs(): genfile=True, position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DT2NIfTI.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_DTIFit.py b/nipype/interfaces/camino/tests/test_auto_DTIFit.py index 7a1558d55b..a23da89552 100644 --- a/nipype/interfaces/camino/tests/test_auto_DTIFit.py +++ b/nipype/interfaces/camino/tests/test_auto_DTIFit.py @@ -11,11 +11,6 @@ def test_DTIFit_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -35,10 +30,6 @@ def test_DTIFit_inputs(): mandatory=True, position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DTIFit.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_DTLUTGen.py b/nipype/interfaces/camino/tests/test_auto_DTLUTGen.py index a98f69fa2f..95e8e0bea5 100644 --- a/nipype/interfaces/camino/tests/test_auto_DTLUTGen.py +++ b/nipype/interfaces/camino/tests/test_auto_DTLUTGen.py @@ -17,11 +17,6 @@ def test_DTLUTGen_inputs(): position=1, units='NA', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inversion=dict( argstr='-inversion %d', units='NA', @@ -53,10 +48,6 @@ def test_DTLUTGen_inputs(): argstr='-step %f', units='NA', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trace=dict( argstr='-trace %G', units='NA', diff --git a/nipype/interfaces/camino/tests/test_auto_DTMetric.py b/nipype/interfaces/camino/tests/test_auto_DTMetric.py index 37460e925a..12256a50d8 100644 --- a/nipype/interfaces/camino/tests/test_auto_DTMetric.py +++ b/nipype/interfaces/camino/tests/test_auto_DTMetric.py @@ -15,11 +15,6 @@ def test_DTMetric_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputdatatype=dict( argstr='-inputdatatype %s', usedefault=True, @@ -36,10 +31,6 @@ def test_DTMetric_inputs(): argstr='-outputfile %s', genfile=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DTMetric.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_FSL2Scheme.py b/nipype/interfaces/camino/tests/test_auto_FSL2Scheme.py index 07231d20a2..a2ebfbf0a6 100644 --- a/nipype/interfaces/camino/tests/test_auto_FSL2Scheme.py +++ b/nipype/interfaces/camino/tests/test_auto_FSL2Scheme.py @@ -31,11 +31,6 @@ def test_FSL2Scheme_inputs(): flipx=dict(argstr='-flipx', ), flipy=dict(argstr='-flipy', ), flipz=dict(argstr='-flipz', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), interleave=dict(argstr='-interleave', ), numscans=dict( argstr='-numscans %d', @@ -46,10 +41,6 @@ def test_FSL2Scheme_inputs(): genfile=True, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), usegradmod=dict(argstr='-usegradmod', ), ) inputs = FSL2Scheme.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_Image2Voxel.py b/nipype/interfaces/camino/tests/test_auto_Image2Voxel.py index cccc941bce..adae10f0bb 100644 --- a/nipype/interfaces/camino/tests/test_auto_Image2Voxel.py +++ b/nipype/interfaces/camino/tests/test_auto_Image2Voxel.py @@ -10,11 +10,6 @@ def test_Image2Voxel_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-4dimage %s', mandatory=True, @@ -30,10 +25,6 @@ def test_Image2Voxel_inputs(): position=2, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Image2Voxel.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_ImageStats.py b/nipype/interfaces/camino/tests/test_auto_ImageStats.py index 4028ef22c3..3813051025 100644 --- a/nipype/interfaces/camino/tests/test_auto_ImageStats.py +++ b/nipype/interfaces/camino/tests/test_auto_ImageStats.py @@ -10,11 +10,6 @@ def test_ImageStats_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='-images %s', mandatory=True, @@ -33,10 +28,6 @@ def test_ImageStats_inputs(): mandatory=True, units='NA', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ImageStats.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_LinRecon.py b/nipype/interfaces/camino/tests/test_auto_LinRecon.py index 9a50503578..8998f42602 100644 --- a/nipype/interfaces/camino/tests/test_auto_LinRecon.py +++ b/nipype/interfaces/camino/tests/test_auto_LinRecon.py @@ -11,11 +11,6 @@ def test_LinRecon_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -38,10 +33,6 @@ def test_LinRecon_inputs(): mandatory=True, position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = LinRecon.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_MESD.py b/nipype/interfaces/camino/tests/test_auto_MESD.py index d80c3aa7ab..73089a3395 100644 --- a/nipype/interfaces/camino/tests/test_auto_MESD.py +++ b/nipype/interfaces/camino/tests/test_auto_MESD.py @@ -15,11 +15,6 @@ def test_MESD_inputs(): argstr='-fastmesd', requires=['mepointset'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', mandatory=True, @@ -50,10 +45,6 @@ def test_MESD_inputs(): argstr='-schemefile %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MESD.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_ModelFit.py b/nipype/interfaces/camino/tests/test_auto_ModelFit.py index cb61ead239..04d22bbe59 100644 --- a/nipype/interfaces/camino/tests/test_auto_ModelFit.py +++ b/nipype/interfaces/camino/tests/test_auto_ModelFit.py @@ -15,11 +15,6 @@ def test_ModelFit_inputs(): ), fixedbvalue=dict(argstr='-fixedbvalue %s', ), fixedmodq=dict(argstr='-fixedmod %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', mandatory=True, @@ -44,10 +39,6 @@ def test_ModelFit_inputs(): ), sigma=dict(argstr='-sigma %G', ), tau=dict(argstr='-tau %G', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ModelFit.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_NIfTIDT2Camino.py b/nipype/interfaces/camino/tests/test_auto_NIfTIDT2Camino.py index 4e3f551125..9a4867a73c 100644 --- a/nipype/interfaces/camino/tests/test_auto_NIfTIDT2Camino.py +++ b/nipype/interfaces/camino/tests/test_auto_NIfTIDT2Camino.py @@ -11,11 +11,6 @@ def test_NIfTIDT2Camino_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', mandatory=True, @@ -30,10 +25,6 @@ def test_NIfTIDT2Camino_inputs(): s0_file=dict(argstr='-s0 %s', ), scaleinter=dict(argstr='-scaleinter %s', ), scaleslope=dict(argstr='-scaleslope %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), uppertriangular=dict(argstr='-uppertriangular %s', ), ) inputs = NIfTIDT2Camino.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_PicoPDFs.py b/nipype/interfaces/camino/tests/test_auto_PicoPDFs.py index 6bb755ff82..f2b59666a2 100644 --- a/nipype/interfaces/camino/tests/test_auto_PicoPDFs.py +++ b/nipype/interfaces/camino/tests/test_auto_PicoPDFs.py @@ -11,11 +11,6 @@ def test_PicoPDFs_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='< %s', mandatory=True, @@ -48,10 +43,6 @@ def test_PicoPDFs_inputs(): position=4, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = PicoPDFs.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_ProcStreamlines.py b/nipype/interfaces/camino/tests/test_auto_ProcStreamlines.py index 986e18c4f9..8838bb72cf 100644 --- a/nipype/interfaces/camino/tests/test_auto_ProcStreamlines.py +++ b/nipype/interfaces/camino/tests/test_auto_ProcStreamlines.py @@ -23,11 +23,6 @@ def test_ProcStreamlines_inputs(): ), exclusionfile=dict(argstr='-exclusionfile %s', ), gzip=dict(argstr='-gzip', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', mandatory=True, @@ -99,10 +94,6 @@ def test_ProcStreamlines_inputs(): units='voxels', ), targetfile=dict(argstr='-targetfile %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), truncateinexclusion=dict(argstr='-truncateinexclusion', ), truncateloops=dict(argstr='-truncateloops', ), voxeldims=dict( diff --git a/nipype/interfaces/camino/tests/test_auto_QBallMX.py b/nipype/interfaces/camino/tests/test_auto_QBallMX.py index dd360414e5..e965cb606a 100644 --- a/nipype/interfaces/camino/tests/test_auto_QBallMX.py +++ b/nipype/interfaces/camino/tests/test_auto_QBallMX.py @@ -14,11 +14,6 @@ def test_QBallMX_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), order=dict( argstr='-order %d', units='NA', @@ -44,10 +39,6 @@ def test_QBallMX_inputs(): argstr='-smoothingsigma %f', units='NA', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = QBallMX.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_SFLUTGen.py b/nipype/interfaces/camino/tests/test_auto_SFLUTGen.py index 514483628a..c52ca04929 100644 --- a/nipype/interfaces/camino/tests/test_auto_SFLUTGen.py +++ b/nipype/interfaces/camino/tests/test_auto_SFLUTGen.py @@ -15,11 +15,6 @@ def test_SFLUTGen_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', mandatory=True, @@ -49,10 +44,6 @@ def test_SFLUTGen_inputs(): argstr='-pdf %s', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SFLUTGen.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_SFPICOCalibData.py b/nipype/interfaces/camino/tests/test_auto_SFPICOCalibData.py index cc45f8380d..e83a01e2c3 100644 --- a/nipype/interfaces/camino/tests/test_auto_SFPICOCalibData.py +++ b/nipype/interfaces/camino/tests/test_auto_SFPICOCalibData.py @@ -10,11 +10,6 @@ def test_SFPICOCalibData_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), info_file=dict( argstr='-infooutputfile %s', genfile=True, @@ -46,10 +41,6 @@ def test_SFPICOCalibData_inputs(): argstr='-snr %f', units='NA', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trace=dict( argstr='-trace %f', units='NA', diff --git a/nipype/interfaces/camino/tests/test_auto_SFPeaks.py b/nipype/interfaces/camino/tests/test_auto_SFPeaks.py index 9012865037..959545d042 100644 --- a/nipype/interfaces/camino/tests/test_auto_SFPeaks.py +++ b/nipype/interfaces/camino/tests/test_auto_SFPeaks.py @@ -14,11 +14,6 @@ def test_SFPeaks_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', mandatory=True, @@ -66,10 +61,6 @@ def test_SFPeaks_inputs(): argstr='-stdsfrommean %f', units='NA', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SFPeaks.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_Shredder.py b/nipype/interfaces/camino/tests/test_auto_Shredder.py index 16d1655e54..1099693874 100644 --- a/nipype/interfaces/camino/tests/test_auto_Shredder.py +++ b/nipype/interfaces/camino/tests/test_auto_Shredder.py @@ -15,11 +15,6 @@ def test_Shredder_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='< %s', mandatory=True, @@ -40,10 +35,6 @@ def test_Shredder_inputs(): position=3, units='NA', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Shredder.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_Track.py b/nipype/interfaces/camino/tests/test_auto_Track.py index fed31e1506..ad8d3ff2bb 100644 --- a/nipype/interfaces/camino/tests/test_auto_Track.py +++ b/nipype/interfaces/camino/tests/test_auto_Track.py @@ -22,11 +22,6 @@ def test_Track_inputs(): usedefault=True, ), gzip=dict(argstr='-gzip', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', position=1, @@ -64,10 +59,6 @@ def test_Track_inputs(): argstr='-stepsize %f', requires=['tracker'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tracker=dict( argstr='-tracker %s', usedefault=True, diff --git a/nipype/interfaces/camino/tests/test_auto_TrackBallStick.py b/nipype/interfaces/camino/tests/test_auto_TrackBallStick.py index 4b2e9776f2..89515cef55 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackBallStick.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackBallStick.py @@ -22,11 +22,6 @@ def test_TrackBallStick_inputs(): usedefault=True, ), gzip=dict(argstr='-gzip', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', position=1, @@ -64,10 +59,6 @@ def test_TrackBallStick_inputs(): argstr='-stepsize %f', requires=['tracker'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tracker=dict( argstr='-tracker %s', usedefault=True, diff --git a/nipype/interfaces/camino/tests/test_auto_TrackBayesDirac.py b/nipype/interfaces/camino/tests/test_auto_TrackBayesDirac.py index 51f4486b80..2815ef18ee 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackBayesDirac.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackBayesDirac.py @@ -27,11 +27,6 @@ def test_TrackBayesDirac_inputs(): extpriordatatype=dict(argstr='-extpriordatatype %s', ), extpriorfile=dict(argstr='-extpriorfile %s', ), gzip=dict(argstr='-gzip', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', position=1, @@ -79,10 +74,6 @@ def test_TrackBayesDirac_inputs(): argstr='-stepsize %f', requires=['tracker'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tracker=dict( argstr='-tracker %s', usedefault=True, diff --git a/nipype/interfaces/camino/tests/test_auto_TrackBedpostxDeter.py b/nipype/interfaces/camino/tests/test_auto_TrackBedpostxDeter.py index c0c95abc2d..827dbb2f27 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackBedpostxDeter.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackBedpostxDeter.py @@ -26,11 +26,6 @@ def test_TrackBedpostxDeter_inputs(): usedefault=True, ), gzip=dict(argstr='-gzip', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', position=1, @@ -72,10 +67,6 @@ def test_TrackBedpostxDeter_inputs(): argstr='-stepsize %f', requires=['tracker'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tracker=dict( argstr='-tracker %s', usedefault=True, diff --git a/nipype/interfaces/camino/tests/test_auto_TrackBedpostxProba.py b/nipype/interfaces/camino/tests/test_auto_TrackBedpostxProba.py index 9b5068df24..e250ec9c40 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackBedpostxProba.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackBedpostxProba.py @@ -26,11 +26,6 @@ def test_TrackBedpostxProba_inputs(): usedefault=True, ), gzip=dict(argstr='-gzip', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', position=1, @@ -76,10 +71,6 @@ def test_TrackBedpostxProba_inputs(): argstr='-stepsize %f', requires=['tracker'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tracker=dict( argstr='-tracker %s', usedefault=True, diff --git a/nipype/interfaces/camino/tests/test_auto_TrackBootstrap.py b/nipype/interfaces/camino/tests/test_auto_TrackBootstrap.py index 9f1207e7f8..90ffd05a2d 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackBootstrap.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackBootstrap.py @@ -27,11 +27,6 @@ def test_TrackBootstrap_inputs(): usedefault=True, ), gzip=dict(argstr='-gzip', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', position=1, @@ -78,10 +73,6 @@ def test_TrackBootstrap_inputs(): argstr='-stepsize %f', requires=['tracker'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tracker=dict( argstr='-tracker %s', usedefault=True, diff --git a/nipype/interfaces/camino/tests/test_auto_TrackDT.py b/nipype/interfaces/camino/tests/test_auto_TrackDT.py index c2915d6328..7ab3772468 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackDT.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackDT.py @@ -22,11 +22,6 @@ def test_TrackDT_inputs(): usedefault=True, ), gzip=dict(argstr='-gzip', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', position=1, @@ -64,10 +59,6 @@ def test_TrackDT_inputs(): argstr='-stepsize %f', requires=['tracker'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tracker=dict( argstr='-tracker %s', usedefault=True, diff --git a/nipype/interfaces/camino/tests/test_auto_TrackPICo.py b/nipype/interfaces/camino/tests/test_auto_TrackPICo.py index 862c998692..30ff12db9f 100644 --- a/nipype/interfaces/camino/tests/test_auto_TrackPICo.py +++ b/nipype/interfaces/camino/tests/test_auto_TrackPICo.py @@ -22,11 +22,6 @@ def test_TrackPICo_inputs(): usedefault=True, ), gzip=dict(argstr='-gzip', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-inputfile %s', position=1, @@ -69,10 +64,6 @@ def test_TrackPICo_inputs(): argstr='-stepsize %f', requires=['tracker'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tracker=dict( argstr='-tracker %s', usedefault=True, diff --git a/nipype/interfaces/camino/tests/test_auto_TractShredder.py b/nipype/interfaces/camino/tests/test_auto_TractShredder.py index 88bd401cca..c9cf40e1c3 100644 --- a/nipype/interfaces/camino/tests/test_auto_TractShredder.py +++ b/nipype/interfaces/camino/tests/test_auto_TractShredder.py @@ -15,11 +15,6 @@ def test_TractShredder_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='< %s', mandatory=True, @@ -40,10 +35,6 @@ def test_TractShredder_inputs(): position=3, units='NA', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TractShredder.input_spec() diff --git a/nipype/interfaces/camino/tests/test_auto_VtkStreamlines.py b/nipype/interfaces/camino/tests/test_auto_VtkStreamlines.py index ae259948a8..8dc8bd03e9 100644 --- a/nipype/interfaces/camino/tests/test_auto_VtkStreamlines.py +++ b/nipype/interfaces/camino/tests/test_auto_VtkStreamlines.py @@ -11,11 +11,6 @@ def test_VtkStreamlines_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr=' < %s', mandatory=True, @@ -44,10 +39,6 @@ def test_VtkStreamlines_inputs(): argstr='-targetfile %s', position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxeldims=dict( argstr='-voxeldims %s', position=4, diff --git a/nipype/interfaces/camino2trackvis/tests/test_auto_Camino2Trackvis.py b/nipype/interfaces/camino2trackvis/tests/test_auto_Camino2Trackvis.py index cfa87befb0..b4d5092dab 100644 --- a/nipype/interfaces/camino2trackvis/tests/test_auto_Camino2Trackvis.py +++ b/nipype/interfaces/camino2trackvis/tests/test_auto_Camino2Trackvis.py @@ -16,11 +16,6 @@ def test_Camino2Trackvis_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -40,10 +35,6 @@ def test_Camino2Trackvis_inputs(): genfile=True, position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_dims=dict( argstr='-x %s', mandatory=True, diff --git a/nipype/interfaces/camino2trackvis/tests/test_auto_Trackvis2Camino.py b/nipype/interfaces/camino2trackvis/tests/test_auto_Trackvis2Camino.py index 64300a1398..978b2439a2 100644 --- a/nipype/interfaces/camino2trackvis/tests/test_auto_Trackvis2Camino.py +++ b/nipype/interfaces/camino2trackvis/tests/test_auto_Trackvis2Camino.py @@ -14,11 +14,6 @@ def test_Trackvis2Camino_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -29,10 +24,6 @@ def test_Trackvis2Camino_inputs(): genfile=True, position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Trackvis2Camino.input_spec() diff --git a/nipype/interfaces/cmtk/tests/test_auto_AverageNetworks.py b/nipype/interfaces/cmtk/tests/test_auto_AverageNetworks.py index a2cc1bf9c5..a80bbe757a 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_AverageNetworks.py +++ b/nipype/interfaces/cmtk/tests/test_auto_AverageNetworks.py @@ -6,11 +6,6 @@ def test_AverageNetworks_inputs(): input_map = dict( group_id=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict(mandatory=True, ), out_gexf_groupavg=dict(), out_gpickled_groupavg=dict(), diff --git a/nipype/interfaces/cmtk/tests/test_auto_CFFBaseInterface.py b/nipype/interfaces/cmtk/tests/test_auto_CFFBaseInterface.py index 7e07630c0b..942f477518 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_CFFBaseInterface.py +++ b/nipype/interfaces/cmtk/tests/test_auto_CFFBaseInterface.py @@ -4,12 +4,7 @@ def test_CFFBaseInterface_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = CFFBaseInterface.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/cmtk/tests/test_auto_CFFConverter.py b/nipype/interfaces/cmtk/tests/test_auto_CFFConverter.py index 1c26049f02..00a1acea98 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_CFFConverter.py +++ b/nipype/interfaces/cmtk/tests/test_auto_CFFConverter.py @@ -13,11 +13,6 @@ def test_CFFConverter_inputs(): gifti_surfaces=dict(), gpickled_networks=dict(), graphml_networks=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), license=dict(), nifti_volumes=dict(), out_file=dict(usedefault=True, ), diff --git a/nipype/interfaces/cmtk/tests/test_auto_CreateNodes.py b/nipype/interfaces/cmtk/tests/test_auto_CreateNodes.py index 42e639d5cd..3635f21e59 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_CreateNodes.py +++ b/nipype/interfaces/cmtk/tests/test_auto_CreateNodes.py @@ -5,11 +5,6 @@ def test_CreateNodes_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), out_filename=dict(usedefault=True, ), resolution_network_file=dict(mandatory=True, ), roi_file=dict(mandatory=True, ), diff --git a/nipype/interfaces/cmtk/tests/test_auto_MergeCNetworks.py b/nipype/interfaces/cmtk/tests/test_auto_MergeCNetworks.py index b97ebfa65f..ceaa6d8dea 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_MergeCNetworks.py +++ b/nipype/interfaces/cmtk/tests/test_auto_MergeCNetworks.py @@ -5,11 +5,6 @@ def test_MergeCNetworks_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict(mandatory=True, ), out_file=dict(usedefault=True, ), ) diff --git a/nipype/interfaces/cmtk/tests/test_auto_NetworkBasedStatistic.py b/nipype/interfaces/cmtk/tests/test_auto_NetworkBasedStatistic.py index 33db760531..e3220e4790 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_NetworkBasedStatistic.py +++ b/nipype/interfaces/cmtk/tests/test_auto_NetworkBasedStatistic.py @@ -6,11 +6,6 @@ def test_NetworkBasedStatistic_inputs(): input_map = dict( edge_key=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_group1=dict(mandatory=True, ), in_group2=dict(mandatory=True, ), node_position_network=dict(), diff --git a/nipype/interfaces/cmtk/tests/test_auto_NetworkXMetrics.py b/nipype/interfaces/cmtk/tests/test_auto_NetworkXMetrics.py index 0673c2019e..d9a3f0c740 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_NetworkXMetrics.py +++ b/nipype/interfaces/cmtk/tests/test_auto_NetworkXMetrics.py @@ -6,11 +6,6 @@ def test_NetworkXMetrics_inputs(): input_map = dict( compute_clique_related_measures=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(mandatory=True, ), out_edge_metrics_matlab=dict(genfile=True, ), out_global_metrics_matlab=dict(genfile=True, ), diff --git a/nipype/interfaces/cmtk/tests/test_auto_Parcellate.py b/nipype/interfaces/cmtk/tests/test_auto_Parcellate.py index 2835586bf7..edcdf2e7a1 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_Parcellate.py +++ b/nipype/interfaces/cmtk/tests/test_auto_Parcellate.py @@ -7,11 +7,6 @@ def test_Parcellate_inputs(): input_map = dict( dilation=dict(usedefault=True, ), freesurfer_dir=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), out_roi_file=dict(genfile=True, ), parcellation_name=dict(usedefault=True, ), subject_id=dict(mandatory=True, ), diff --git a/nipype/interfaces/cmtk/tests/test_auto_ROIGen.py b/nipype/interfaces/cmtk/tests/test_auto_ROIGen.py index 87c08bcdf4..dd2ce50aec 100644 --- a/nipype/interfaces/cmtk/tests/test_auto_ROIGen.py +++ b/nipype/interfaces/cmtk/tests/test_auto_ROIGen.py @@ -8,11 +8,6 @@ def test_ROIGen_inputs(): LUT_file=dict(xor=['use_freesurfer_LUT'], ), aparc_aseg_file=dict(mandatory=True, ), freesurfer_dir=dict(requires=['use_freesurfer_LUT'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), out_dict_file=dict(genfile=True, ), out_roi_file=dict(genfile=True, ), use_freesurfer_LUT=dict(xor=['LUT_file'], ), diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTIRecon.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTIRecon.py index 267b57fabf..a39dbf6c3b 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTIRecon.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTIRecon.py @@ -21,11 +21,6 @@ def test_DTIRecon_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_orientation_vectors=dict(argstr='-iop %f', ), n_averages=dict(argstr='-nex %s', ), oblique_correction=dict(argstr='-oc', ), @@ -38,10 +33,6 @@ def test_DTIRecon_inputs(): argstr='-ot %s', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DTIRecon.input_spec() diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTITracker.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTITracker.py index ded73b8372..cf483d00d0 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTITracker.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_DTITracker.py @@ -12,11 +12,6 @@ def test_DTITracker_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_data_prefix=dict( argstr='%s', position=0, @@ -50,10 +45,6 @@ def test_DTITracker_inputs(): swap_yz=dict(argstr='-syz', ), swap_zx=dict(argstr='-szx', ), tensor_file=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tracking_method=dict(argstr='-%s', ), ) inputs = DTITracker.input_spec() diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_HARDIMat.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_HARDIMat.py index 565e606eb0..59bc8c25a5 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_HARDIMat.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_HARDIMat.py @@ -16,11 +16,6 @@ def test_HARDIMat_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_info=dict(argstr='-info %s', ), image_orientation_vectors=dict(argstr='-iop %f', ), oblique_correction=dict(argstr='-oc', ), @@ -32,10 +27,6 @@ def test_HARDIMat_inputs(): usedefault=True, ), reference_file=dict(argstr='-ref %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = HARDIMat.input_spec() diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFRecon.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFRecon.py index 1e25ac5a75..1e66b93bec 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFRecon.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFRecon.py @@ -17,11 +17,6 @@ def test_ODFRecon_inputs(): usedefault=True, ), filter=dict(argstr='-f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_orientation_vectors=dict(argstr='-iop %f', ), matrix=dict( argstr='-mat %s', @@ -54,10 +49,6 @@ def test_ODFRecon_inputs(): ), sharpness=dict(argstr='-s %f', ), subtract_background=dict(argstr='-bg', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ODFRecon.input_spec() diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFTracker.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFTracker.py index 053abd400e..41b2d530f6 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFTracker.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_ODFTracker.py @@ -14,11 +14,6 @@ def test_ODFTracker_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_orientation_vectors=dict(argstr='-iop %f', ), input_data_prefix=dict( argstr='%s', @@ -57,10 +52,6 @@ def test_ODFTracker_inputs(): swap_xy=dict(argstr='-sxy', ), swap_yz=dict(argstr='-syz', ), swap_zx=dict(argstr='-szx', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_order=dict(argstr='-vorder %s', ), ) inputs = ODFTracker.input_spec() diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_SplineFilter.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_SplineFilter.py index 0e40d997d8..8648a1f1f9 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_SplineFilter.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_SplineFilter.py @@ -10,11 +10,6 @@ def test_SplineFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), output_file=dict( argstr='%s', position=2, @@ -25,10 +20,6 @@ def test_SplineFilter_inputs(): mandatory=True, position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), track_file=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/diffusion_toolkit/tests/test_auto_TrackMerge.py b/nipype/interfaces/diffusion_toolkit/tests/test_auto_TrackMerge.py index c05ea7234f..b004678175 100644 --- a/nipype/interfaces/diffusion_toolkit/tests/test_auto_TrackMerge.py +++ b/nipype/interfaces/diffusion_toolkit/tests/test_auto_TrackMerge.py @@ -10,20 +10,11 @@ def test_TrackMerge_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), output_file=dict( argstr='%s', position=-1, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), track_files=dict( argstr='%s...', mandatory=True, diff --git a/nipype/interfaces/dipy/tests/test_auto_APMQball.py b/nipype/interfaces/dipy/tests/test_auto_APMQball.py index ce5ba095e2..f6f3f2e4c6 100644 --- a/nipype/interfaces/dipy/tests/test_auto_APMQball.py +++ b/nipype/interfaces/dipy/tests/test_auto_APMQball.py @@ -6,11 +6,6 @@ def test_APMQball_inputs(): input_map = dict( b0_thres=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(mandatory=True, ), in_bvec=dict(mandatory=True, ), in_file=dict(mandatory=True, ), diff --git a/nipype/interfaces/dipy/tests/test_auto_CSD.py b/nipype/interfaces/dipy/tests/test_auto_CSD.py index 8df31812e3..a30efaa3cc 100644 --- a/nipype/interfaces/dipy/tests/test_auto_CSD.py +++ b/nipype/interfaces/dipy/tests/test_auto_CSD.py @@ -6,11 +6,6 @@ def test_CSD_inputs(): input_map = dict( b0_thres=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(mandatory=True, ), in_bvec=dict(mandatory=True, ), in_file=dict(mandatory=True, ), diff --git a/nipype/interfaces/dipy/tests/test_auto_DTI.py b/nipype/interfaces/dipy/tests/test_auto_DTI.py index 1c41b83e46..68c9ae1437 100644 --- a/nipype/interfaces/dipy/tests/test_auto_DTI.py +++ b/nipype/interfaces/dipy/tests/test_auto_DTI.py @@ -6,11 +6,6 @@ def test_DTI_inputs(): input_map = dict( b0_thres=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(mandatory=True, ), in_bvec=dict(mandatory=True, ), in_file=dict(mandatory=True, ), diff --git a/nipype/interfaces/dipy/tests/test_auto_DipyBaseInterface.py b/nipype/interfaces/dipy/tests/test_auto_DipyBaseInterface.py index f4ddbe6256..e133e266c4 100644 --- a/nipype/interfaces/dipy/tests/test_auto_DipyBaseInterface.py +++ b/nipype/interfaces/dipy/tests/test_auto_DipyBaseInterface.py @@ -4,12 +4,7 @@ def test_DipyBaseInterface_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = DipyBaseInterface.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/dipy/tests/test_auto_DipyDiffusionInterface.py b/nipype/interfaces/dipy/tests/test_auto_DipyDiffusionInterface.py index f495857181..ee9022ca58 100644 --- a/nipype/interfaces/dipy/tests/test_auto_DipyDiffusionInterface.py +++ b/nipype/interfaces/dipy/tests/test_auto_DipyDiffusionInterface.py @@ -6,11 +6,6 @@ def test_DipyDiffusionInterface_inputs(): input_map = dict( b0_thres=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(mandatory=True, ), in_bvec=dict(mandatory=True, ), in_file=dict(mandatory=True, ), diff --git a/nipype/interfaces/dipy/tests/test_auto_EstimateResponseSH.py b/nipype/interfaces/dipy/tests/test_auto_EstimateResponseSH.py index 2971b7fbc1..1270d94b13 100644 --- a/nipype/interfaces/dipy/tests/test_auto_EstimateResponseSH.py +++ b/nipype/interfaces/dipy/tests/test_auto_EstimateResponseSH.py @@ -8,11 +8,6 @@ def test_EstimateResponseSH_inputs(): auto=dict(xor=['recursive'], ), b0_thres=dict(usedefault=True, ), fa_thresh=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(mandatory=True, ), in_bvec=dict(mandatory=True, ), in_evals=dict(mandatory=True, ), diff --git a/nipype/interfaces/dipy/tests/test_auto_RESTORE.py b/nipype/interfaces/dipy/tests/test_auto_RESTORE.py index cee36a676e..9f62d05e0c 100644 --- a/nipype/interfaces/dipy/tests/test_auto_RESTORE.py +++ b/nipype/interfaces/dipy/tests/test_auto_RESTORE.py @@ -6,11 +6,6 @@ def test_RESTORE_inputs(): input_map = dict( b0_thres=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(mandatory=True, ), in_bvec=dict(mandatory=True, ), in_file=dict(mandatory=True, ), diff --git a/nipype/interfaces/dipy/tests/test_auto_SimulateMultiTensor.py b/nipype/interfaces/dipy/tests/test_auto_SimulateMultiTensor.py index 4cc8865e99..db46a3b982 100644 --- a/nipype/interfaces/dipy/tests/test_auto_SimulateMultiTensor.py +++ b/nipype/interfaces/dipy/tests/test_auto_SimulateMultiTensor.py @@ -10,11 +10,6 @@ def test_SimulateMultiTensor_inputs(): diff_iso=dict(usedefault=True, ), diff_sf=dict(usedefault=True, ), gradients=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(), in_bvec=dict(), in_dirs=dict(mandatory=True, ), diff --git a/nipype/interfaces/dipy/tests/test_auto_StreamlineTractography.py b/nipype/interfaces/dipy/tests/test_auto_StreamlineTractography.py index 579cd561a4..1bc1a2ea97 100644 --- a/nipype/interfaces/dipy/tests/test_auto_StreamlineTractography.py +++ b/nipype/interfaces/dipy/tests/test_auto_StreamlineTractography.py @@ -9,11 +9,6 @@ def test_StreamlineTractography_inputs(): mandatory=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(mandatory=True, ), in_model=dict(), in_peaks=dict(), diff --git a/nipype/interfaces/dipy/tests/test_auto_TensorMode.py b/nipype/interfaces/dipy/tests/test_auto_TensorMode.py index 8e80c89d36..d072af78fc 100644 --- a/nipype/interfaces/dipy/tests/test_auto_TensorMode.py +++ b/nipype/interfaces/dipy/tests/test_auto_TensorMode.py @@ -6,11 +6,6 @@ def test_TensorMode_inputs(): input_map = dict( b0_thres=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(mandatory=True, ), in_bvec=dict(mandatory=True, ), in_file=dict(mandatory=True, ), diff --git a/nipype/interfaces/dipy/tests/test_auto_TrackDensityMap.py b/nipype/interfaces/dipy/tests/test_auto_TrackDensityMap.py index ef8a561214..79af3b5940 100644 --- a/nipype/interfaces/dipy/tests/test_auto_TrackDensityMap.py +++ b/nipype/interfaces/dipy/tests/test_auto_TrackDensityMap.py @@ -6,11 +6,6 @@ def test_TrackDensityMap_inputs(): input_map = dict( data_dims=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(mandatory=True, ), out_filename=dict(usedefault=True, ), points_space=dict(usedefault=True, ), diff --git a/nipype/interfaces/dtitk/tests/test_auto_AffScalarVol.py b/nipype/interfaces/dtitk/tests/test_auto_AffScalarVol.py index b9c01c4933..5f9262d788 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_AffScalarVol.py +++ b/nipype/interfaces/dtitk/tests/test_auto_AffScalarVol.py @@ -18,11 +18,6 @@ def test_AffScalarVol_inputs(): argstr='-euler %g %g %g', xor=['transform'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -41,10 +36,6 @@ def test_AffScalarVol_inputs(): argstr='-target %s', xor=['transform'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='-trans %s', xor=['target', 'translation', 'euler', 'deformation'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_AffSymTensor3DVol.py b/nipype/interfaces/dtitk/tests/test_auto_AffSymTensor3DVol.py index 8004a09add..6d7abc852a 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_AffSymTensor3DVol.py +++ b/nipype/interfaces/dtitk/tests/test_auto_AffSymTensor3DVol.py @@ -18,11 +18,6 @@ def test_AffSymTensor3DVol_inputs(): argstr='-euler %g %g %g', xor=['transform'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -45,10 +40,6 @@ def test_AffSymTensor3DVol_inputs(): argstr='-target %s', xor=['transform'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='-trans %s', xor=['target', 'translation', 'euler', 'deformation'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_Affine.py b/nipype/interfaces/dtitk/tests/test_auto_Affine.py index 8a80801ba9..78d2e6f011 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_Affine.py +++ b/nipype/interfaces/dtitk/tests/test_auto_Affine.py @@ -22,11 +22,6 @@ def test_Affine_inputs(): position=4, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialize_xfm=dict( argstr='%s', copyfile=True, @@ -50,10 +45,6 @@ def test_Affine_inputs(): position=2, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Affine.input_spec() diff --git a/nipype/interfaces/dtitk/tests/test_auto_AffineTask.py b/nipype/interfaces/dtitk/tests/test_auto_AffineTask.py index c7de1d31c8..5f3b43153a 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_AffineTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_AffineTask.py @@ -22,11 +22,6 @@ def test_AffineTask_inputs(): position=4, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialize_xfm=dict( argstr='%s', copyfile=True, @@ -50,10 +45,6 @@ def test_AffineTask_inputs(): position=2, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AffineTask.input_spec() diff --git a/nipype/interfaces/dtitk/tests/test_auto_BinThresh.py b/nipype/interfaces/dtitk/tests/test_auto_BinThresh.py index 8425da5fc0..cbd4efccb2 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_BinThresh.py +++ b/nipype/interfaces/dtitk/tests/test_auto_BinThresh.py @@ -10,11 +10,6 @@ def test_BinThresh_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -45,10 +40,6 @@ def test_BinThresh_inputs(): position=5, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upper_bound=dict( argstr='%g', mandatory=True, diff --git a/nipype/interfaces/dtitk/tests/test_auto_BinThreshTask.py b/nipype/interfaces/dtitk/tests/test_auto_BinThreshTask.py index 96147f3d0c..dcd396abe2 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_BinThreshTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_BinThreshTask.py @@ -10,11 +10,6 @@ def test_BinThreshTask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -45,10 +40,6 @@ def test_BinThreshTask_inputs(): position=5, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upper_bound=dict( argstr='%g', mandatory=True, diff --git a/nipype/interfaces/dtitk/tests/test_auto_CommandLineDtitk.py b/nipype/interfaces/dtitk/tests/test_auto_CommandLineDtitk.py index fbd1fcb4ac..b43fcc5e97 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_CommandLineDtitk.py +++ b/nipype/interfaces/dtitk/tests/test_auto_CommandLineDtitk.py @@ -10,15 +10,6 @@ def test_CommandLineDtitk_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = CommandLineDtitk.input_spec() diff --git a/nipype/interfaces/dtitk/tests/test_auto_ComposeXfm.py b/nipype/interfaces/dtitk/tests/test_auto_ComposeXfm.py index 9ee4c44650..09fcdc186e 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_ComposeXfm.py +++ b/nipype/interfaces/dtitk/tests/test_auto_ComposeXfm.py @@ -10,11 +10,6 @@ def test_ComposeXfm_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_aff=dict( argstr='-aff %s', mandatory=True, @@ -27,10 +22,6 @@ def test_ComposeXfm_inputs(): argstr='-out %s', genfile=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ComposeXfm.input_spec() diff --git a/nipype/interfaces/dtitk/tests/test_auto_ComposeXfmTask.py b/nipype/interfaces/dtitk/tests/test_auto_ComposeXfmTask.py index 0166be1c37..99c6f6d340 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_ComposeXfmTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_ComposeXfmTask.py @@ -10,11 +10,6 @@ def test_ComposeXfmTask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_aff=dict( argstr='-aff %s', mandatory=True, @@ -27,10 +22,6 @@ def test_ComposeXfmTask_inputs(): argstr='-out %s', genfile=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ComposeXfmTask.input_spec() diff --git a/nipype/interfaces/dtitk/tests/test_auto_Diffeo.py b/nipype/interfaces/dtitk/tests/test_auto_Diffeo.py index a389d22bf9..ad532bd631 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_Diffeo.py +++ b/nipype/interfaces/dtitk/tests/test_auto_Diffeo.py @@ -20,11 +20,6 @@ def test_Diffeo_inputs(): position=5, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), legacy=dict( argstr='%d', mandatory=True, @@ -46,10 +41,6 @@ def test_Diffeo_inputs(): position=4, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Diffeo.input_spec() diff --git a/nipype/interfaces/dtitk/tests/test_auto_DiffeoScalarVol.py b/nipype/interfaces/dtitk/tests/test_auto_DiffeoScalarVol.py index 86512dfa26..7d1305d384 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_DiffeoScalarVol.py +++ b/nipype/interfaces/dtitk/tests/test_auto_DiffeoScalarVol.py @@ -11,11 +11,6 @@ def test_DiffeoScalarVol_inputs(): usedefault=True, ), flip=dict(argstr='-flip %d %d %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -35,10 +30,6 @@ def test_DiffeoScalarVol_inputs(): argstr='-target %s', xor=['voxel_size'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='-trans %s', mandatory=True, diff --git a/nipype/interfaces/dtitk/tests/test_auto_DiffeoSymTensor3DVol.py b/nipype/interfaces/dtitk/tests/test_auto_DiffeoSymTensor3DVol.py index 31a516a7c9..b934c56d2b 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_DiffeoSymTensor3DVol.py +++ b/nipype/interfaces/dtitk/tests/test_auto_DiffeoSymTensor3DVol.py @@ -15,11 +15,6 @@ def test_DiffeoSymTensor3DVol_inputs(): usedefault=True, ), flip=dict(argstr='-flip %d %d %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -43,10 +38,6 @@ def test_DiffeoSymTensor3DVol_inputs(): argstr='-target %s', xor=['voxel_size'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='-trans %s', mandatory=True, diff --git a/nipype/interfaces/dtitk/tests/test_auto_DiffeoTask.py b/nipype/interfaces/dtitk/tests/test_auto_DiffeoTask.py index 0129f7d70c..5aea665d4c 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_DiffeoTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_DiffeoTask.py @@ -20,11 +20,6 @@ def test_DiffeoTask_inputs(): position=5, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), legacy=dict( argstr='%d', mandatory=True, @@ -46,10 +41,6 @@ def test_DiffeoTask_inputs(): position=4, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DiffeoTask.input_spec() diff --git a/nipype/interfaces/dtitk/tests/test_auto_Rigid.py b/nipype/interfaces/dtitk/tests/test_auto_Rigid.py index 8ffc827e61..ecb7c2d33b 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_Rigid.py +++ b/nipype/interfaces/dtitk/tests/test_auto_Rigid.py @@ -22,11 +22,6 @@ def test_Rigid_inputs(): position=4, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialize_xfm=dict( argstr='%s', copyfile=True, @@ -50,10 +45,6 @@ def test_Rigid_inputs(): position=2, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Rigid.input_spec() diff --git a/nipype/interfaces/dtitk/tests/test_auto_RigidTask.py b/nipype/interfaces/dtitk/tests/test_auto_RigidTask.py index a2747184da..c627fda741 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_RigidTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_RigidTask.py @@ -22,11 +22,6 @@ def test_RigidTask_inputs(): position=4, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialize_xfm=dict( argstr='%s', copyfile=True, @@ -50,10 +45,6 @@ def test_RigidTask_inputs(): position=2, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = RigidTask.input_spec() diff --git a/nipype/interfaces/dtitk/tests/test_auto_SVAdjustVoxSp.py b/nipype/interfaces/dtitk/tests/test_auto_SVAdjustVoxSp.py index 3fefd1044d..3574906455 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_SVAdjustVoxSp.py +++ b/nipype/interfaces/dtitk/tests/test_auto_SVAdjustVoxSp.py @@ -10,11 +10,6 @@ def test_SVAdjustVoxSp_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -33,10 +28,6 @@ def test_SVAdjustVoxSp_inputs(): argstr='-target %s', xor=['voxel_size', 'origin'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_size=dict( argstr='-vsize %g %g %g', xor=['target_file'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_SVAdjustVoxSpTask.py b/nipype/interfaces/dtitk/tests/test_auto_SVAdjustVoxSpTask.py index 88f328d80b..40a7592c19 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_SVAdjustVoxSpTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_SVAdjustVoxSpTask.py @@ -10,11 +10,6 @@ def test_SVAdjustVoxSpTask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -33,10 +28,6 @@ def test_SVAdjustVoxSpTask_inputs(): argstr='-target %s', xor=['voxel_size', 'origin'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_size=dict( argstr='-vsize %g %g %g', xor=['target_file'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_SVResample.py b/nipype/interfaces/dtitk/tests/test_auto_SVResample.py index e11f4e111e..91ca638f22 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_SVResample.py +++ b/nipype/interfaces/dtitk/tests/test_auto_SVResample.py @@ -15,11 +15,6 @@ def test_SVResample_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -38,10 +33,6 @@ def test_SVResample_inputs(): argstr='-target %s', xor=['array_size', 'voxel_size', 'origin'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_size=dict( argstr='-vsize %g %g %g', xor=['target_file'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_SVResampleTask.py b/nipype/interfaces/dtitk/tests/test_auto_SVResampleTask.py index 8058c94435..8a7574bfd8 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_SVResampleTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_SVResampleTask.py @@ -15,11 +15,6 @@ def test_SVResampleTask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -38,10 +33,6 @@ def test_SVResampleTask_inputs(): argstr='-target %s', xor=['array_size', 'voxel_size', 'origin'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_size=dict( argstr='-vsize %g %g %g', xor=['target_file'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_TVAdjustOriginTask.py b/nipype/interfaces/dtitk/tests/test_auto_TVAdjustOriginTask.py index a111687d26..bda9128369 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_TVAdjustOriginTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_TVAdjustOriginTask.py @@ -10,11 +10,6 @@ def test_TVAdjustOriginTask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -33,10 +28,6 @@ def test_TVAdjustOriginTask_inputs(): argstr='-target %s', xor=['voxel_size', 'origin'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_size=dict( argstr='-vsize %g %g %g', xor=['target_file'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_TVAdjustVoxSp.py b/nipype/interfaces/dtitk/tests/test_auto_TVAdjustVoxSp.py index 34d8c2bf4f..b8ce9039d5 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_TVAdjustVoxSp.py +++ b/nipype/interfaces/dtitk/tests/test_auto_TVAdjustVoxSp.py @@ -10,11 +10,6 @@ def test_TVAdjustVoxSp_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -33,10 +28,6 @@ def test_TVAdjustVoxSp_inputs(): argstr='-target %s', xor=['voxel_size', 'origin'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_size=dict( argstr='-vsize %g %g %g', xor=['target_file'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_TVAdjustVoxSpTask.py b/nipype/interfaces/dtitk/tests/test_auto_TVAdjustVoxSpTask.py index 7d4c3d6e7b..e9ef8137dc 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_TVAdjustVoxSpTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_TVAdjustVoxSpTask.py @@ -10,11 +10,6 @@ def test_TVAdjustVoxSpTask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -33,10 +28,6 @@ def test_TVAdjustVoxSpTask_inputs(): argstr='-target %s', xor=['voxel_size', 'origin'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_size=dict( argstr='-vsize %g %g %g', xor=['target_file'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_TVResample.py b/nipype/interfaces/dtitk/tests/test_auto_TVResample.py index 6a1a01a594..aefafc6430 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_TVResample.py +++ b/nipype/interfaces/dtitk/tests/test_auto_TVResample.py @@ -15,11 +15,6 @@ def test_TVResample_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -39,10 +34,6 @@ def test_TVResample_inputs(): argstr='-target %s', xor=['array_size', 'voxel_size', 'origin'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_size=dict( argstr='-vsize %g %g %g', xor=['target_file'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_TVResampleTask.py b/nipype/interfaces/dtitk/tests/test_auto_TVResampleTask.py index 43ae1cd842..b3c70bb729 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_TVResampleTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_TVResampleTask.py @@ -15,11 +15,6 @@ def test_TVResampleTask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -39,10 +34,6 @@ def test_TVResampleTask_inputs(): argstr='-target %s', xor=['array_size', 'voxel_size', 'origin'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_size=dict( argstr='-vsize %g %g %g', xor=['target_file'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_TVtool.py b/nipype/interfaces/dtitk/tests/test_auto_TVtool.py index a1eceb7549..2267228631 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_TVtool.py +++ b/nipype/interfaces/dtitk/tests/test_auto_TVtool.py @@ -10,11 +10,6 @@ def test_TVtool_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -24,10 +19,6 @@ def test_TVtool_inputs(): argstr='-out %s', genfile=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TVtool.input_spec() diff --git a/nipype/interfaces/dtitk/tests/test_auto_TVtoolTask.py b/nipype/interfaces/dtitk/tests/test_auto_TVtoolTask.py index cebbdc96a7..252d7c9d0a 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_TVtoolTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_TVtoolTask.py @@ -10,11 +10,6 @@ def test_TVtoolTask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -24,10 +19,6 @@ def test_TVtoolTask_inputs(): argstr='-out %s', genfile=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TVtoolTask.input_spec() diff --git a/nipype/interfaces/dtitk/tests/test_auto_affScalarVolTask.py b/nipype/interfaces/dtitk/tests/test_auto_affScalarVolTask.py index e0d45372c2..72330737b6 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_affScalarVolTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_affScalarVolTask.py @@ -18,11 +18,6 @@ def test_affScalarVolTask_inputs(): argstr='-euler %g %g %g', xor=['transform'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -41,10 +36,6 @@ def test_affScalarVolTask_inputs(): argstr='-target %s', xor=['transform'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='-trans %s', xor=['target', 'translation', 'euler', 'deformation'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_affSymTensor3DVolTask.py b/nipype/interfaces/dtitk/tests/test_auto_affSymTensor3DVolTask.py index 9b9502a4d7..da8fae25cc 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_affSymTensor3DVolTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_affSymTensor3DVolTask.py @@ -18,11 +18,6 @@ def test_affSymTensor3DVolTask_inputs(): argstr='-euler %g %g %g', xor=['transform'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -45,10 +40,6 @@ def test_affSymTensor3DVolTask_inputs(): argstr='-target %s', xor=['transform'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='-trans %s', xor=['target', 'translation', 'euler', 'deformation'], diff --git a/nipype/interfaces/dtitk/tests/test_auto_diffeoScalarVolTask.py b/nipype/interfaces/dtitk/tests/test_auto_diffeoScalarVolTask.py index b3ef9827a6..10965b7077 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_diffeoScalarVolTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_diffeoScalarVolTask.py @@ -11,11 +11,6 @@ def test_diffeoScalarVolTask_inputs(): usedefault=True, ), flip=dict(argstr='-flip %d %d %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -35,10 +30,6 @@ def test_diffeoScalarVolTask_inputs(): argstr='-target %s', xor=['voxel_size'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='-trans %s', mandatory=True, diff --git a/nipype/interfaces/dtitk/tests/test_auto_diffeoSymTensor3DVolTask.py b/nipype/interfaces/dtitk/tests/test_auto_diffeoSymTensor3DVolTask.py index a380fcabc6..52112735b1 100644 --- a/nipype/interfaces/dtitk/tests/test_auto_diffeoSymTensor3DVolTask.py +++ b/nipype/interfaces/dtitk/tests/test_auto_diffeoSymTensor3DVolTask.py @@ -15,11 +15,6 @@ def test_diffeoSymTensor3DVolTask_inputs(): usedefault=True, ), flip=dict(argstr='-flip %d %d %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -43,10 +38,6 @@ def test_diffeoSymTensor3DVolTask_inputs(): argstr='-target %s', xor=['voxel_size'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='-trans %s', mandatory=True, diff --git a/nipype/interfaces/elastix/tests/test_auto_AnalyzeWarp.py b/nipype/interfaces/elastix/tests/test_auto_AnalyzeWarp.py index 6f60a845f5..cb486b8487 100644 --- a/nipype/interfaces/elastix/tests/test_auto_AnalyzeWarp.py +++ b/nipype/interfaces/elastix/tests/test_auto_AnalyzeWarp.py @@ -10,11 +10,6 @@ def test_AnalyzeWarp_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), num_threads=dict( argstr='-threads %01d', nohash=True, @@ -25,10 +20,6 @@ def test_AnalyzeWarp_inputs(): mandatory=True, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform_file=dict( argstr='-tp %s', mandatory=True, diff --git a/nipype/interfaces/elastix/tests/test_auto_ApplyWarp.py b/nipype/interfaces/elastix/tests/test_auto_ApplyWarp.py index a927790cf0..16f2b54079 100644 --- a/nipype/interfaces/elastix/tests/test_auto_ApplyWarp.py +++ b/nipype/interfaces/elastix/tests/test_auto_ApplyWarp.py @@ -10,11 +10,6 @@ def test_ApplyWarp_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), moving_image=dict( argstr='-in %s', mandatory=True, @@ -29,10 +24,6 @@ def test_ApplyWarp_inputs(): mandatory=True, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform_file=dict( argstr='-tp %s', mandatory=True, diff --git a/nipype/interfaces/elastix/tests/test_auto_EditTransform.py b/nipype/interfaces/elastix/tests/test_auto_EditTransform.py index 5abfdbda67..ef227da7f8 100644 --- a/nipype/interfaces/elastix/tests/test_auto_EditTransform.py +++ b/nipype/interfaces/elastix/tests/test_auto_EditTransform.py @@ -5,11 +5,6 @@ def test_EditTransform_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), interpolation=dict( argstr='FinalBSplineInterpolationOrder', usedefault=True, diff --git a/nipype/interfaces/elastix/tests/test_auto_PointsWarp.py b/nipype/interfaces/elastix/tests/test_auto_PointsWarp.py index 183d035bde..c93a0526c1 100644 --- a/nipype/interfaces/elastix/tests/test_auto_PointsWarp.py +++ b/nipype/interfaces/elastix/tests/test_auto_PointsWarp.py @@ -10,11 +10,6 @@ def test_PointsWarp_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), num_threads=dict( argstr='-threads %01d', nohash=True, @@ -29,10 +24,6 @@ def test_PointsWarp_inputs(): argstr='-def %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform_file=dict( argstr='-tp %s', mandatory=True, diff --git a/nipype/interfaces/elastix/tests/test_auto_Registration.py b/nipype/interfaces/elastix/tests/test_auto_Registration.py index 810279947e..4e774ab036 100644 --- a/nipype/interfaces/elastix/tests/test_auto_Registration.py +++ b/nipype/interfaces/elastix/tests/test_auto_Registration.py @@ -15,11 +15,6 @@ def test_Registration_inputs(): mandatory=True, ), fixed_mask=dict(argstr='-fMask %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initial_transform=dict(argstr='-t0 %s', ), moving_image=dict( argstr='-m %s', @@ -40,10 +35,6 @@ def test_Registration_inputs(): argstr='-p %s...', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Registration.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_BBRegister.py b/nipype/interfaces/freesurfer/tests/test_BBRegister.py index dd022e0db7..3e80ad4e9c 100644 --- a/nipype/interfaces/freesurfer/tests/test_BBRegister.py +++ b/nipype/interfaces/freesurfer/tests/test_BBRegister.py @@ -16,10 +16,6 @@ def test_BBRegister_inputs(): ), epi_mask=dict(argstr='--epi-mask', ), fsldof=dict(argstr='--fsl-dof %d', ), - ignore_exception=dict( - nohash=True, - usedefault=True, - ), init=dict( argstr='--init-%s', mandatory=True, @@ -61,7 +57,6 @@ def test_BBRegister_inputs(): mandatory=True, ), subjects_dir=dict(), - terminal_output=dict(nohash=True, ), ) input_map_6_0 = dict( args=dict(argstr='%s', ), @@ -76,10 +71,6 @@ def test_BBRegister_inputs(): ), epi_mask=dict(argstr='--epi-mask', ), fsldof=dict(argstr='--fsl-dof %d', ), - ignore_exception=dict( - nohash=True, - usedefault=True, - ), init=dict( argstr='--init-%s', xor=['init_reg_file'], @@ -119,7 +110,6 @@ def test_BBRegister_inputs(): mandatory=True, ), subjects_dir=dict(), - terminal_output=dict(nohash=True, ), ) instance = BBRegister() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_AddXFormToHeader.py b/nipype/interfaces/freesurfer/tests/test_auto_AddXFormToHeader.py index b966a32c4f..ed32693df5 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_AddXFormToHeader.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_AddXFormToHeader.py @@ -11,11 +11,6 @@ def test_AddXFormToHeader_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -27,10 +22,6 @@ def test_AddXFormToHeader_inputs(): usedefault=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Aparc2Aseg.py b/nipype/interfaces/freesurfer/tests/test_auto_Aparc2Aseg.py index 4c285b4cf4..fc5bc39b6f 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Aparc2Aseg.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Aparc2Aseg.py @@ -16,11 +16,6 @@ def test_Aparc2Aseg_inputs(): ), filled=dict(), hypo_wm=dict(argstr='--hypo-as-wm', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), label_wm=dict(argstr='--labelwm', ), lh_annotation=dict(mandatory=True, ), lh_pial=dict(mandatory=True, ), @@ -42,10 +37,6 @@ def test_Aparc2Aseg_inputs(): usedefault=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), volmask=dict(argstr='--volmask', ), ) inputs = Aparc2Aseg.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Apas2Aseg.py b/nipype/interfaces/freesurfer/tests/test_auto_Apas2Aseg.py index ecbac701b6..7044fdde2f 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Apas2Aseg.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Apas2Aseg.py @@ -10,11 +10,6 @@ def test_Apas2Aseg_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--i %s', mandatory=True, @@ -24,10 +19,6 @@ def test_Apas2Aseg_inputs(): mandatory=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Apas2Aseg.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ApplyMask.py b/nipype/interfaces/freesurfer/tests/test_auto_ApplyMask.py index 52043c3828..69f56d7dde 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ApplyMask.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ApplyMask.py @@ -10,11 +10,6 @@ def test_ApplyMask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -37,10 +32,6 @@ def test_ApplyMask_inputs(): position=-1, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transfer=dict(argstr='-transfer %d', ), use_abs=dict(argstr='-abs', ), xfm_file=dict(argstr='-xform %s', ), diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ApplyVolTransform.py b/nipype/interfaces/freesurfer/tests/test_auto_ApplyVolTransform.py index 9752161454..c9e8f85904 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ApplyVolTransform.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ApplyVolTransform.py @@ -22,11 +22,6 @@ def test_ApplyVolTransform_inputs(): xor=('reg_file', 'lta_file', 'lta_inv_file', 'fsl_reg_file', 'xfm_reg_file', 'reg_header', 'mni_152_reg', 'subject'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), interp=dict(argstr='--interp %s', ), inverse=dict(argstr='--inv', ), invert_morph=dict( @@ -92,10 +87,6 @@ def test_ApplyVolTransform_inputs(): mandatory=True, xor=('target_file', 'tal', 'fs_target'), ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformed_file=dict( argstr='--o %s', genfile=True, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Binarize.py b/nipype/interfaces/freesurfer/tests/test_auto_Binarize.py index adac7e5ad8..93db55cd30 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Binarize.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Binarize.py @@ -23,11 +23,6 @@ def test_Binarize_inputs(): erode=dict(argstr='--erode %d', ), erode2d=dict(argstr='--erode2d %d', ), frame_no=dict(argstr='--frame %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--i %s', copyfile=False, @@ -50,10 +45,6 @@ def test_Binarize_inputs(): rmax=dict(argstr='--rmax %f', ), rmin=dict(argstr='--rmin %f', ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ventricles=dict(argstr='--ventricles', ), wm=dict(argstr='--wm', ), wm_ven_csf=dict( diff --git a/nipype/interfaces/freesurfer/tests/test_auto_CALabel.py b/nipype/interfaces/freesurfer/tests/test_auto_CALabel.py index 7ee5f891b9..1cf35fcedb 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_CALabel.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_CALabel.py @@ -12,11 +12,6 @@ def test_CALabel_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -40,10 +35,6 @@ def test_CALabel_inputs(): mandatory=True, position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_CANormalize.py b/nipype/interfaces/freesurfer/tests/test_auto_CANormalize.py index cefb659df0..0e8ec025ec 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_CANormalize.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_CANormalize.py @@ -16,11 +16,6 @@ def test_CANormalize_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -37,10 +32,6 @@ def test_CANormalize_inputs(): position=-1, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_CARegister.py b/nipype/interfaces/freesurfer/tests/test_auto_CARegister.py index 94a87ced9a..e3cbf52f10 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_CARegister.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_CARegister.py @@ -12,11 +12,6 @@ def test_CARegister_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -41,10 +36,6 @@ def test_CARegister_inputs(): argstr='%s', position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict(argstr='-T %s', ), ) inputs = CARegister.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_CheckTalairachAlignment.py b/nipype/interfaces/freesurfer/tests/test_auto_CheckTalairachAlignment.py index 753029c8d2..a7d3ad3bb0 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_CheckTalairachAlignment.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_CheckTalairachAlignment.py @@ -10,11 +10,6 @@ def test_CheckTalairachAlignment_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-xfm %s', mandatory=True, @@ -28,10 +23,6 @@ def test_CheckTalairachAlignment_inputs(): xor=['in_file'], ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict( argstr='-T %.3f', usedefault=True, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Concatenate.py b/nipype/interfaces/freesurfer/tests/test_auto_Concatenate.py index efa08400f3..e4e8efb718 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Concatenate.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Concatenate.py @@ -17,11 +17,6 @@ def test_Concatenate_inputs(): usedefault=True, ), gmean=dict(argstr='--gmean %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='--i %s...', mandatory=True, @@ -38,10 +33,6 @@ def test_Concatenate_inputs(): sort=dict(argstr='--sort', ), stats=dict(argstr='--%s', ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), vote=dict(argstr='--vote', ), ) inputs = Concatenate.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ConcatenateLTA.py b/nipype/interfaces/freesurfer/tests/test_auto_ConcatenateLTA.py index 60472d7876..40a465b249 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ConcatenateLTA.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ConcatenateLTA.py @@ -10,11 +10,6 @@ def test_ConcatenateLTA_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_lta1=dict( argstr='%s', mandatory=True, @@ -49,10 +44,6 @@ def test_ConcatenateLTA_inputs(): position=-4, requires=['tal_source_file'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ConcatenateLTA.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Contrast.py b/nipype/interfaces/freesurfer/tests/test_auto_Contrast.py index e87bbf5f0f..7999001813 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Contrast.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Contrast.py @@ -17,11 +17,6 @@ def test_Contrast_inputs(): argstr='--%s-only', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), orig=dict(mandatory=True, ), rawavg=dict(mandatory=True, ), subject_id=dict( @@ -30,10 +25,6 @@ def test_Contrast_inputs(): usedefault=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thickness=dict(mandatory=True, ), white=dict(mandatory=True, ), ) diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Curvature.py b/nipype/interfaces/freesurfer/tests/test_auto_Curvature.py index 3d1c3d0afe..f29b76df29 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Curvature.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Curvature.py @@ -13,11 +13,6 @@ def test_Curvature_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=True, @@ -27,10 +22,6 @@ def test_Curvature_inputs(): n=dict(argstr='-n', ), save=dict(argstr='-w', ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='-thresh %.3f', ), ) inputs = Curvature.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_CurvatureStats.py b/nipype/interfaces/freesurfer/tests/test_auto_CurvatureStats.py index b3d27043e9..19d6a4772e 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_CurvatureStats.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_CurvatureStats.py @@ -26,11 +26,6 @@ def test_CurvatureStats_inputs(): mandatory=True, position=-3, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), min_max=dict(argstr='-m', ), out_file=dict( argstr='-o %s', @@ -46,10 +41,6 @@ def test_CurvatureStats_inputs(): ), subjects_dir=dict(), surface=dict(argstr='-F %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), values=dict(argstr='-G', ), write=dict(argstr='--writeCurvatureFiles', ), ) diff --git a/nipype/interfaces/freesurfer/tests/test_auto_DICOMConvert.py b/nipype/interfaces/freesurfer/tests/test_auto_DICOMConvert.py index f49611b9ce..efd53fb773 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_DICOMConvert.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_DICOMConvert.py @@ -14,21 +14,12 @@ def test_DICOMConvert_inputs(): usedefault=True, ), file_mapping=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ignore_single_slice=dict(requires=['dicom_info'], ), out_type=dict(usedefault=True, ), seq_list=dict(requires=['dicom_info'], ), subject_dir_template=dict(usedefault=True, ), subject_id=dict(), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DICOMConvert.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_EMRegister.py b/nipype/interfaces/freesurfer/tests/test_auto_EMRegister.py index fb05a8319d..e681a03871 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_EMRegister.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_EMRegister.py @@ -10,11 +10,6 @@ def test_EMRegister_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -38,10 +33,6 @@ def test_EMRegister_inputs(): mandatory=True, position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict(argstr='-t %s', ), ) inputs = EMRegister.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_EditWMwithAseg.py b/nipype/interfaces/freesurfer/tests/test_auto_EditWMwithAseg.py index d641b82923..f971f4fab9 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_EditWMwithAseg.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_EditWMwithAseg.py @@ -15,11 +15,6 @@ def test_EditWMwithAseg_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -37,10 +32,6 @@ def test_EditWMwithAseg_inputs(): position=-2, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = EditWMwithAseg.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_EulerNumber.py b/nipype/interfaces/freesurfer/tests/test_auto_EulerNumber.py index 08ba898ba2..996d079b48 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_EulerNumber.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_EulerNumber.py @@ -10,21 +10,12 @@ def test_EulerNumber_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, position=-1, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = EulerNumber.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ExtractMainComponent.py b/nipype/interfaces/freesurfer/tests/test_auto_ExtractMainComponent.py index ae84d516d1..f3f4896a75 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ExtractMainComponent.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ExtractMainComponent.py @@ -10,11 +10,6 @@ def test_ExtractMainComponent_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -26,10 +21,6 @@ def test_ExtractMainComponent_inputs(): name_template='%s.maincmp', position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ExtractMainComponent.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_FSCommand.py b/nipype/interfaces/freesurfer/tests/test_auto_FSCommand.py index 8f7c7db082..0546d99006 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_FSCommand.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_FSCommand.py @@ -10,16 +10,7 @@ def test_FSCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FSCommand.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_FSCommandOpenMP.py b/nipype/interfaces/freesurfer/tests/test_auto_FSCommandOpenMP.py index 93e59f9a12..5b8bca1484 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_FSCommandOpenMP.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_FSCommandOpenMP.py @@ -10,17 +10,8 @@ def test_FSCommandOpenMP_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), num_threads=dict(), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FSCommandOpenMP.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_FSScriptCommand.py b/nipype/interfaces/freesurfer/tests/test_auto_FSScriptCommand.py index f2c4605c86..e791bb5976 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_FSScriptCommand.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_FSScriptCommand.py @@ -10,16 +10,7 @@ def test_FSScriptCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FSScriptCommand.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_FitMSParams.py b/nipype/interfaces/freesurfer/tests/test_auto_FitMSParams.py index 299cbd5023..9e6b1cbc8b 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_FitMSParams.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_FitMSParams.py @@ -11,11 +11,6 @@ def test_FitMSParams_inputs(): usedefault=True, ), flip_list=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', mandatory=True, @@ -28,10 +23,6 @@ def test_FitMSParams_inputs(): ), subjects_dir=dict(), te_list=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tr_list=dict(), xfm_list=dict(), ) diff --git a/nipype/interfaces/freesurfer/tests/test_auto_FixTopology.py b/nipype/interfaces/freesurfer/tests/test_auto_FixTopology.py index 7a0f0b80ed..8b61823b42 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_FixTopology.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_FixTopology.py @@ -17,11 +17,6 @@ def test_FixTopology_inputs(): mandatory=True, position=-1, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_brain=dict(mandatory=True, ), in_inflated=dict(mandatory=True, ), in_orig=dict(mandatory=True, ), @@ -36,10 +31,6 @@ def test_FixTopology_inputs(): usedefault=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FixTopology.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_FuseSegmentations.py b/nipype/interfaces/freesurfer/tests/test_auto_FuseSegmentations.py index 909490bbfc..8608444fc8 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_FuseSegmentations.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_FuseSegmentations.py @@ -10,11 +10,6 @@ def test_FuseSegmentations_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_norms=dict( argstr='-n %s', mandatory=True, @@ -36,10 +31,6 @@ def test_FuseSegmentations_inputs(): position=-3, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timepoints=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_GLMFit.py b/nipype/interfaces/freesurfer/tests/test_auto_GLMFit.py index a6a3aadcb4..828bbfab03 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_GLMFit.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_GLMFit.py @@ -47,11 +47,6 @@ def test_GLMFit_inputs(): genfile=True, ), hemi=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--y %s', copyfile=False, @@ -100,10 +95,6 @@ def test_GLMFit_inputs(): ), surf_geo=dict(usedefault=True, ), synth=dict(argstr='--synth', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), uniform=dict(argstr='--uniform %f %f', ), var_fwhm=dict(argstr='--var-fwhm %f', ), vox_dump=dict(argstr='--voxdump %d %d %d', ), diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ImageInfo.py b/nipype/interfaces/freesurfer/tests/test_auto_ImageInfo.py index 38c22ec2c9..2fa225e87e 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ImageInfo.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ImageInfo.py @@ -10,20 +10,11 @@ def test_ImageInfo_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', position=1, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ImageInfo.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Jacobian.py b/nipype/interfaces/freesurfer/tests/test_auto_Jacobian.py index a7bc1dfa14..49f5e6b48f 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Jacobian.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Jacobian.py @@ -10,11 +10,6 @@ def test_Jacobian_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_mappedsurf=dict( argstr='%s', mandatory=True, @@ -34,10 +29,6 @@ def test_Jacobian_inputs(): position=-1, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Jacobian.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_LTAConvert.py b/nipype/interfaces/freesurfer/tests/test_auto_LTAConvert.py index 13024587b0..bcbf971d01 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_LTAConvert.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_LTAConvert.py @@ -10,11 +10,6 @@ def test_LTAConvert_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_fsl=dict( argstr='--infsl %s', mandatory=True, @@ -64,10 +59,6 @@ def test_LTAConvert_inputs(): source_file=dict(argstr='--src %s', ), target_conform=dict(argstr='--trgconform', ), target_file=dict(argstr='--trg %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = LTAConvert.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Label2Annot.py b/nipype/interfaces/freesurfer/tests/test_auto_Label2Annot.py index 1e94061567..2d7761006b 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Label2Annot.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Label2Annot.py @@ -16,11 +16,6 @@ def test_Label2Annot_inputs(): argstr='--hemi %s', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_labels=dict( argstr='--l %s...', mandatory=True, @@ -37,10 +32,6 @@ def test_Label2Annot_inputs(): usedefault=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose_off=dict(argstr='--noverbose', ), ) inputs = Label2Annot.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Label2Label.py b/nipype/interfaces/freesurfer/tests/test_auto_Label2Label.py index 581a5d8898..7511cd0dbb 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Label2Label.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Label2Label.py @@ -15,11 +15,6 @@ def test_Label2Label_inputs(): argstr='--hemi %s', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), out_file=dict( argstr='--trglabel %s', hash_files=False, @@ -48,10 +43,6 @@ def test_Label2Label_inputs(): usedefault=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), white=dict(mandatory=True, ), ) inputs = Label2Label.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Label2Vol.py b/nipype/interfaces/freesurfer/tests/test_auto_Label2Vol.py index 80747b44ef..fb2726635f 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Label2Vol.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Label2Vol.py @@ -28,11 +28,6 @@ def test_Label2Vol_inputs(): argstr='--identity', xor=('reg_file', 'reg_header', 'identity'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), invert_mtx=dict(argstr='--invertmtx', ), label_file=dict( argstr='--label %s...', @@ -69,10 +64,6 @@ def test_Label2Vol_inputs(): argstr='--temp %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), vol_label_file=dict( argstr='--o %s', genfile=True, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MNIBiasCorrection.py b/nipype/interfaces/freesurfer/tests/test_auto_MNIBiasCorrection.py index 4ff44524ee..7b6ae4a945 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MNIBiasCorrection.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MNIBiasCorrection.py @@ -11,11 +11,6 @@ def test_MNIBiasCorrection_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--i %s', mandatory=True, @@ -37,10 +32,6 @@ def test_MNIBiasCorrection_inputs(): shrink=dict(argstr='--shrink %d', ), stop=dict(argstr='--stop %f', ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict(argstr='--uchar %s', ), ) inputs = MNIBiasCorrection.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MPRtoMNI305.py b/nipype/interfaces/freesurfer/tests/test_auto_MPRtoMNI305.py index 94aef97aff..b4b7436120 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MPRtoMNI305.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MPRtoMNI305.py @@ -10,11 +10,6 @@ def test_MPRtoMNI305_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', usedefault=True, @@ -28,10 +23,6 @@ def test_MPRtoMNI305_inputs(): mandatory=True, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MPRtoMNI305.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIConvert.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIConvert.py index c1c65e90d2..b44cf7a308 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIConvert.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIConvert.py @@ -30,11 +30,6 @@ def test_MRIConvert_inputs(): frame=dict(argstr='--frame %d', ), frame_subsample=dict(argstr='--fsubsample %d %d %d', ), fwhm=dict(argstr='--fwhm %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_center=dict(argstr='--in_center %s', ), in_file=dict( argstr='--input_volume %s', @@ -101,10 +96,6 @@ def test_MRIConvert_inputs(): te=dict(argstr='-te %d', ), template_info=dict(argstr='--template_info', ), template_type=dict(argstr='--template_type %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ti=dict(argstr='-ti %d', ), tr=dict(argstr='-tr %d', ), unwarp_gradient=dict(argstr='--unwarp_gradient_nonlinearity', ), diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRICoreg.py b/nipype/interfaces/freesurfer/tests/test_auto_MRICoreg.py index abfa091eb2..6c12cabdc2 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRICoreg.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRICoreg.py @@ -21,11 +21,6 @@ def test_MRICoreg_inputs(): usedefault=True, ), ftol=dict(argstr='--ftol %e', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initial_rotation=dict(argstr='--rot %g %g %g', ), initial_scale=dict(argstr='--scale %g %g %g', ), initial_shear=dict(argstr='--shear %g %g %g', ), @@ -72,10 +67,6 @@ def test_MRICoreg_inputs(): xor=['reference_file'], ), subjects_dir=dict(argstr='--sd %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MRICoreg.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIFill.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIFill.py index b6cfafb2d7..719986961d 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIFill.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIFill.py @@ -10,11 +10,6 @@ def test_MRIFill_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -28,10 +23,6 @@ def test_MRIFill_inputs(): ), segmentation=dict(argstr='-segmentation %s', ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict(argstr='-xform %s', ), ) inputs = MRIFill.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIMarchingCubes.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIMarchingCubes.py index 38d9606c38..f43d217256 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIMarchingCubes.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIMarchingCubes.py @@ -15,11 +15,6 @@ def test_MRIMarchingCubes_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -36,10 +31,6 @@ def test_MRIMarchingCubes_inputs(): position=-2, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MRIMarchingCubes.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIPretess.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIPretess.py index bd34227714..2e7c7d2ea5 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIPretess.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIPretess.py @@ -10,11 +10,6 @@ def test_MRIPretess_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_filled=dict( argstr='%s', mandatory=True, @@ -41,10 +36,6 @@ def test_MRIPretess_inputs(): position=-1, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), test=dict(argstr='-test', ), ) inputs = MRIPretess.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRISPreproc.py b/nipype/interfaces/freesurfer/tests/test_auto_MRISPreproc.py index ce68c41056..c92b4fea15 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRISPreproc.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRISPreproc.py @@ -26,11 +26,6 @@ def test_MRISPreproc_inputs(): argstr='--hemi %s', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), num_iters=dict( argstr='--niters %d', xor=['fwhm'], @@ -72,10 +67,6 @@ def test_MRISPreproc_inputs(): argstr='--target %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), vol_measure_file=dict(argstr='--iv %s %s...', ), ) inputs = MRISPreproc.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRISPreprocReconAll.py b/nipype/interfaces/freesurfer/tests/test_auto_MRISPreprocReconAll.py index 677d9dda5a..e72d8adb9e 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRISPreprocReconAll.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRISPreprocReconAll.py @@ -27,11 +27,6 @@ def test_MRISPreprocReconAll_inputs(): argstr='--hemi %s', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), lh_surfreg_target=dict(requires=['surfreg_files'], ), num_iters=dict( argstr='--niters %d', @@ -84,10 +79,6 @@ def test_MRISPreprocReconAll_inputs(): argstr='--target %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), vol_measure_file=dict(argstr='--iv %s %s...', ), ) inputs = MRISPreprocReconAll.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRITessellate.py b/nipype/interfaces/freesurfer/tests/test_auto_MRITessellate.py index 25a8a4b301..a5899cfe70 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRITessellate.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRITessellate.py @@ -10,11 +10,6 @@ def test_MRITessellate_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -31,10 +26,6 @@ def test_MRITessellate_inputs(): position=-1, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tesselate_all_voxels=dict(argstr='-a', ), use_real_RAS_coordinates=dict(argstr='-n', ), ) diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIsCALabel.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIsCALabel.py index 6f13ea5e75..441be3e0a4 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIsCALabel.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIsCALabel.py @@ -28,11 +28,6 @@ def test_MRIsCALabel_inputs(): mandatory=True, position=-4, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), label=dict(argstr='-l %s', ), num_threads=dict(), out_file=dict( @@ -53,10 +48,6 @@ def test_MRIsCALabel_inputs(): ), subjects_dir=dict(), sulc=dict(mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MRIsCALabel.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIsCalc.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIsCalc.py index e85a44fcea..cbd68c8457 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIsCalc.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIsCalc.py @@ -15,11 +15,6 @@ def test_MRIsCalc_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file1=dict( argstr='%s', mandatory=True, @@ -45,10 +40,6 @@ def test_MRIsCalc_inputs(): mandatory=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MRIsCalc.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIsCombine.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIsCombine.py index 93c37acf7d..657292c5c7 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIsCombine.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIsCombine.py @@ -10,11 +10,6 @@ def test_MRIsCombine_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='--combinesurfs %s', mandatory=True, @@ -27,10 +22,6 @@ def test_MRIsCombine_inputs(): position=-1, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MRIsCombine.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIsConvert.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIsConvert.py index 45205baf3a..21622b2449 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIsConvert.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIsConvert.py @@ -13,11 +13,6 @@ def test_MRIsConvert_inputs(): usedefault=True, ), functional_file=dict(argstr='-f %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -45,10 +40,6 @@ def test_MRIsConvert_inputs(): scale=dict(argstr='-s %.3f', ), subjects_dir=dict(), talairachxfm_subjid=dict(argstr='-t %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), to_scanner=dict(argstr='--to-scanner', ), to_tkr=dict(argstr='--to-tkr', ), vertex=dict(argstr='-v', ), diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIsExpand.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIsExpand.py index d9b352c453..8639c1e7b6 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIsExpand.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIsExpand.py @@ -16,11 +16,6 @@ def test_MRIsExpand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -44,10 +39,6 @@ def test_MRIsExpand_inputs(): ), spring=dict(argstr='-S %g', ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thickness=dict(argstr='-thickness', ), thickness_name=dict( argstr='-thickness_name %s', diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MRIsInflate.py b/nipype/interfaces/freesurfer/tests/test_auto_MRIsInflate.py index ff857f3b44..73e48a2521 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MRIsInflate.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MRIsInflate.py @@ -10,11 +10,6 @@ def test_MRIsInflate_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=True, @@ -35,10 +30,6 @@ def test_MRIsInflate_inputs(): ), out_sulc=dict(xor=['no_save_sulc'], ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MRIsInflate.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MS_LDA.py b/nipype/interfaces/freesurfer/tests/test_auto_MS_LDA.py index 6c978254a5..f3453818c5 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MS_LDA.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MS_LDA.py @@ -11,11 +11,6 @@ def test_MS_LDA_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), images=dict( argstr='%s', copyfile=False, @@ -31,10 +26,6 @@ def test_MS_LDA_inputs(): mask_file=dict(argstr='-mask %s', ), shift=dict(argstr='-shift %d', ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), use_weights=dict(argstr='-W', ), vol_synth_file=dict( argstr='-synth %s', diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MakeAverageSubject.py b/nipype/interfaces/freesurfer/tests/test_auto_MakeAverageSubject.py index bb102a7df7..5dfb555346 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MakeAverageSubject.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MakeAverageSubject.py @@ -10,11 +10,6 @@ def test_MakeAverageSubject_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), out_name=dict( argstr='--out %s', usedefault=True, @@ -25,10 +20,6 @@ def test_MakeAverageSubject_inputs(): mandatory=True, sep=' ', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MakeAverageSubject.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_MakeSurfaces.py b/nipype/interfaces/freesurfer/tests/test_auto_MakeSurfaces.py index 36c4c1bf90..7ff18eeba6 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_MakeSurfaces.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_MakeSurfaces.py @@ -17,11 +17,6 @@ def test_MakeSurfaces_inputs(): mandatory=True, position=-1, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_T1=dict(argstr='-T1 %s', ), in_aseg=dict(argstr='-aseg %s', ), in_filled=dict(mandatory=True, ), @@ -52,10 +47,6 @@ def test_MakeSurfaces_inputs(): usedefault=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), white=dict(argstr='-white %s', ), white_only=dict(argstr='-whiteonly', ), ) diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Normalize.py b/nipype/interfaces/freesurfer/tests/test_auto_Normalize.py index 810b3f5537..1923b5ceed 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Normalize.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Normalize.py @@ -11,11 +11,6 @@ def test_Normalize_inputs(): usedefault=True, ), gradient=dict(argstr='-g %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -32,10 +27,6 @@ def test_Normalize_inputs(): ), segmentation=dict(argstr='-aseg %s', ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict(), ) inputs = Normalize.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_OneSampleTTest.py b/nipype/interfaces/freesurfer/tests/test_auto_OneSampleTTest.py index 0d81e6c229..1091bdbdc3 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_OneSampleTTest.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_OneSampleTTest.py @@ -47,11 +47,6 @@ def test_OneSampleTTest_inputs(): genfile=True, ), hemi=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--y %s', copyfile=False, @@ -100,10 +95,6 @@ def test_OneSampleTTest_inputs(): ), surf_geo=dict(usedefault=True, ), synth=dict(argstr='--synth', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), uniform=dict(argstr='--uniform %f %f', ), var_fwhm=dict(argstr='--var-fwhm %f', ), vox_dump=dict(argstr='--voxdump %d %d %d', ), diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Paint.py b/nipype/interfaces/freesurfer/tests/test_auto_Paint.py index 5a4ba970f0..c452594e55 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Paint.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Paint.py @@ -11,11 +11,6 @@ def test_Paint_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_surf=dict( argstr='%s', mandatory=True, @@ -36,10 +31,6 @@ def test_Paint_inputs(): position=-3, ), template_param=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Paint.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ParcellationStats.py b/nipype/interfaces/freesurfer/tests/test_auto_ParcellationStats.py index 14a1651a1c..81ac276b2f 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ParcellationStats.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ParcellationStats.py @@ -19,11 +19,6 @@ def test_ParcellationStats_inputs(): mandatory=True, position=-2, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_annotation=dict( argstr='-a %s', xor=['in_label'], @@ -61,10 +56,6 @@ def test_ParcellationStats_inputs(): position=-1, ), tabular_output=dict(argstr='-b', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), th3=dict( argstr='-th3', requires=['cortex_label'], diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ParseDICOMDir.py b/nipype/interfaces/freesurfer/tests/test_auto_ParseDICOMDir.py index c9f3ddce39..93254ddcb3 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ParseDICOMDir.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ParseDICOMDir.py @@ -18,18 +18,9 @@ def test_ParseDICOMDir_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), sortbyrun=dict(argstr='--sortbyrun', ), subjects_dir=dict(), summarize=dict(argstr='--summarize', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ParseDICOMDir.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_ReconAll.py b/nipype/interfaces/freesurfer/tests/test_auto_ReconAll.py index e82f26bff5..39f6a8c942 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_ReconAll.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_ReconAll.py @@ -41,11 +41,6 @@ def test_ReconAll_inputs(): argstr='-hires', min_ver='6.0.0', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mprage=dict(argstr='-mprage', ), mri_aparc2aseg=dict(xor=['expert'], ), mri_ca_label=dict(xor=['expert'], ), @@ -84,10 +79,6 @@ def test_ReconAll_inputs(): hash_files=False, ), talairach=dict(xor=['expert'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), use_FLAIR=dict( argstr='-FLAIRpial', min_ver='5.3.0', diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Register.py b/nipype/interfaces/freesurfer/tests/test_auto_Register.py index b8d16473e4..b4eff5133c 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Register.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Register.py @@ -14,11 +14,6 @@ def test_Register_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_smoothwm=dict(copyfile=True, ), in_sulc=dict( copyfile=True, @@ -41,10 +36,6 @@ def test_Register_inputs(): mandatory=True, position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Register.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_RegisterAVItoTalairach.py b/nipype/interfaces/freesurfer/tests/test_auto_RegisterAVItoTalairach.py index e124b3fdf3..0bc88bf935 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_RegisterAVItoTalairach.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_RegisterAVItoTalairach.py @@ -10,11 +10,6 @@ def test_RegisterAVItoTalairach_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -31,10 +26,6 @@ def test_RegisterAVItoTalairach_inputs(): mandatory=True, position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), vox2vox=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_RelabelHypointensities.py b/nipype/interfaces/freesurfer/tests/test_auto_RelabelHypointensities.py index 894377fd42..859aff0820 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_RelabelHypointensities.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_RelabelHypointensities.py @@ -15,11 +15,6 @@ def test_RelabelHypointensities_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), lh_white=dict( copyfile=True, mandatory=True, @@ -42,10 +37,6 @@ def test_RelabelHypointensities_inputs(): position=-2, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = RelabelHypointensities.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_RemoveIntersection.py b/nipype/interfaces/freesurfer/tests/test_auto_RemoveIntersection.py index 19dc15e93c..69e1d453a4 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_RemoveIntersection.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_RemoveIntersection.py @@ -10,11 +10,6 @@ def test_RemoveIntersection_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=True, @@ -30,10 +25,6 @@ def test_RemoveIntersection_inputs(): position=-1, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = RemoveIntersection.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_RemoveNeck.py b/nipype/interfaces/freesurfer/tests/test_auto_RemoveNeck.py index abada8f119..9e095ddba0 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_RemoveNeck.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_RemoveNeck.py @@ -10,11 +10,6 @@ def test_RemoveNeck_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -35,10 +30,6 @@ def test_RemoveNeck_inputs(): mandatory=True, position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Resample.py b/nipype/interfaces/freesurfer/tests/test_auto_Resample.py index 6e019e7a19..ecb939d89a 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Resample.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Resample.py @@ -10,11 +10,6 @@ def test_Resample_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -26,10 +21,6 @@ def test_Resample_inputs(): position=-1, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_size=dict( argstr='-vs %.2f %.2f %.2f', mandatory=True, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_RobustRegister.py b/nipype/interfaces/freesurfer/tests/test_auto_RobustRegister.py index b1681aaab0..af9020c278 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_RobustRegister.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_RobustRegister.py @@ -24,11 +24,6 @@ def test_RobustRegister_inputs(): half_targ_xfm=dict(argstr='--halfdstlta %s', ), half_weights=dict(argstr='--halfweights %s', ), high_iterations=dict(argstr='--highit %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_xfm_file=dict(argstr='--transform', ), init_orient=dict(argstr='--initorient', ), iteration_thresh=dict(argstr='--epsit %.3f', ), @@ -59,10 +54,6 @@ def test_RobustRegister_inputs(): argstr='--dst %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trans_only=dict(argstr='--transonly', ), weights_file=dict(argstr='--weights %s', ), write_vo2vox=dict(argstr='--vox2vox', ), diff --git a/nipype/interfaces/freesurfer/tests/test_auto_RobustTemplate.py b/nipype/interfaces/freesurfer/tests/test_auto_RobustTemplate.py index bde671c699..e845a764e4 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_RobustTemplate.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_RobustTemplate.py @@ -17,11 +17,6 @@ def test_RobustTemplate_inputs(): usedefault=True, ), fixed_timepoint=dict(argstr='--fixtp', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='--mov %s', mandatory=True, @@ -45,10 +40,6 @@ def test_RobustTemplate_inputs(): scaled_intensity_outputs=dict(argstr='--iscaleout %s', ), subjects_dir=dict(), subsample_threshold=dict(argstr='--subsample %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform_outputs=dict(argstr='--lta %s', ), ) inputs = RobustTemplate.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py b/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py index beb143068b..0926eebba2 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SampleToSurface.py @@ -29,11 +29,6 @@ def test_SampleToSurface_inputs(): argstr='--icoorder %d', requires=['target_subject'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), interp_method=dict(argstr='--interp %s', ), mask_label=dict( argstr='--mask %s', @@ -101,10 +96,6 @@ def test_SampleToSurface_inputs(): ), surface=dict(argstr='--surf %s', ), target_subject=dict(argstr='--trgsubject %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), vox_file=dict(argstr='--nvox %s', ), ) inputs = SampleToSurface.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SegStats.py b/nipype/interfaces/freesurfer/tests/test_auto_SegStats.py index 4dbbf24d3a..8feb61d9d8 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SegStats.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SegStats.py @@ -41,11 +41,6 @@ def test_SegStats_inputs(): argstr='--ctab-gca %s', xor=('color_table_file', 'default_color_table', 'gca_color_table'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(argstr='--i %s', ), in_intensity=dict(argstr='--in %s --in-intensity-name %s', ), intensity_units=dict( @@ -81,10 +76,6 @@ def test_SegStats_inputs(): mandatory=True, xor=('segmentation_file', 'annot', 'surf_label'), ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), total_gray=dict(argstr='--totalgray', ), vox=dict(argstr='--vox %s', ), wm_vol_from_surf=dict(argstr='--surf-wm-vol', ), diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SegStatsReconAll.py b/nipype/interfaces/freesurfer/tests/test_auto_SegStatsReconAll.py index f528748743..e65dc82e3b 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SegStatsReconAll.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SegStatsReconAll.py @@ -43,11 +43,6 @@ def test_SegStatsReconAll_inputs(): argstr='--ctab-gca %s', xor=('color_table_file', 'default_color_table', 'gca_color_table'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(argstr='--i %s', ), in_intensity=dict(argstr='--in %s --in-intensity-name %s', ), intensity_units=dict( @@ -96,10 +91,6 @@ def test_SegStatsReconAll_inputs(): mandatory=True, xor=('segmentation_file', 'annot', 'surf_label'), ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), total_gray=dict(argstr='--totalgray', ), transform=dict(mandatory=True, ), vox=dict(argstr='--vox %s', ), diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SegmentCC.py b/nipype/interfaces/freesurfer/tests/test_auto_SegmentCC.py index 5ec97d6a8a..e6b5fb2679 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SegmentCC.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SegmentCC.py @@ -11,11 +11,6 @@ def test_SegmentCC_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-aseg %s', mandatory=True, @@ -39,10 +34,6 @@ def test_SegmentCC_inputs(): usedefault=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SegmentCC.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SegmentWM.py b/nipype/interfaces/freesurfer/tests/test_auto_SegmentWM.py index fe7196ff5e..aa742e8fea 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SegmentWM.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SegmentWM.py @@ -10,11 +10,6 @@ def test_SegmentWM_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -26,10 +21,6 @@ def test_SegmentWM_inputs(): position=-1, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SegmentWM.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Smooth.py b/nipype/interfaces/freesurfer/tests/test_auto_Smooth.py index 9f3a2dcc29..fe4581dee0 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Smooth.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Smooth.py @@ -10,11 +10,6 @@ def test_Smooth_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--i %s', mandatory=True, @@ -47,10 +42,6 @@ def test_Smooth_inputs(): requires=['reg_file'], xor=['num_iters'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), vol_fwhm=dict(argstr='--vol-fwhm %f', ), ) inputs = Smooth.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SmoothTessellation.py b/nipype/interfaces/freesurfer/tests/test_auto_SmoothTessellation.py index 3c2ad64b53..8ce4dce075 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SmoothTessellation.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SmoothTessellation.py @@ -14,11 +14,6 @@ def test_SmoothTessellation_inputs(): ), gaussian_curvature_norm_steps=dict(argstr='%d ', ), gaussian_curvature_smoothing_steps=dict(argstr='%d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=True, @@ -37,10 +32,6 @@ def test_SmoothTessellation_inputs(): smoothing_iterations=dict(argstr='-n %d', ), snapshot_writing_iterations=dict(argstr='-w %d', ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), use_gaussian_curvature_smoothing=dict(argstr='-g', ), use_momentum=dict(argstr='-m', ), ) diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Sphere.py b/nipype/interfaces/freesurfer/tests/test_auto_Sphere.py index 1ed350ee6d..461398e6a8 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Sphere.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Sphere.py @@ -10,11 +10,6 @@ def test_Sphere_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=True, @@ -33,10 +28,6 @@ def test_Sphere_inputs(): ), seed=dict(argstr='-seed %d', ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Sphere.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SphericalAverage.py b/nipype/interfaces/freesurfer/tests/test_auto_SphericalAverage.py index 7942f5250a..efdc032787 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SphericalAverage.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SphericalAverage.py @@ -21,11 +21,6 @@ def test_SphericalAverage_inputs(): mandatory=True, position=-4, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_average=dict( argstr='%s', genfile=True, @@ -47,10 +42,6 @@ def test_SphericalAverage_inputs(): mandatory=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='-t %.1f', ), which=dict( argstr='%s', diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Surface2VolTransform.py b/nipype/interfaces/freesurfer/tests/test_auto_Surface2VolTransform.py index da83b0b9ef..ca3f96c42b 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Surface2VolTransform.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Surface2VolTransform.py @@ -14,11 +14,6 @@ def test_Surface2VolTransform_inputs(): argstr='--hemi %s', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mkmask=dict( argstr='--mkmask', xor=['source_file'], @@ -42,10 +37,6 @@ def test_Surface2VolTransform_inputs(): subjects_dir=dict(argstr='--sd %s', ), surf_name=dict(argstr='--surf %s', ), template_file=dict(argstr='--template %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformed_file=dict( argstr='--outvol %s', hash_files=False, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSmooth.py b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSmooth.py index e4dd282f9a..84bef6ed7a 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSmooth.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSmooth.py @@ -22,11 +22,6 @@ def test_SurfaceSmooth_inputs(): argstr='--hemi %s', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--sval %s', mandatory=True, @@ -45,10 +40,6 @@ def test_SurfaceSmooth_inputs(): mandatory=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SurfaceSmooth.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSnapshots.py b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSnapshots.py index 7f146550b6..a413d410b1 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSnapshots.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceSnapshots.py @@ -29,11 +29,6 @@ def test_SurfaceSnapshots_inputs(): argstr='-overlay-reg-identity', xor=['overlay_reg', 'identity_reg', 'mni152_reg'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), invert_overlay=dict(argstr='-invphaseflag 1', ), label_file=dict( argstr='-label %s', @@ -91,10 +86,6 @@ def test_SurfaceSnapshots_inputs(): argstr='%s', genfile=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), truncate_overlay=dict(argstr='-truncphaseflag 1', ), ) inputs = SurfaceSnapshots.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceTransform.py b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceTransform.py index 714208568d..0546a275dc 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SurfaceTransform.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SurfaceTransform.py @@ -14,11 +14,6 @@ def test_SurfaceTransform_inputs(): argstr='--hemi %s', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), out_file=dict( argstr='--tval %s', genfile=True, @@ -50,10 +45,6 @@ def test_SurfaceTransform_inputs(): mandatory=True, ), target_type=dict(argstr='--tfmt %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SurfaceTransform.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_SynthesizeFLASH.py b/nipype/interfaces/freesurfer/tests/test_auto_SynthesizeFLASH.py index 73c00988b1..ea121d877e 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_SynthesizeFLASH.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_SynthesizeFLASH.py @@ -19,11 +19,6 @@ def test_SynthesizeFLASH_inputs(): mandatory=True, position=3, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), out_file=dict( argstr='%s', genfile=True, @@ -44,10 +39,6 @@ def test_SynthesizeFLASH_inputs(): mandatory=True, position=4, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tr=dict( argstr='%.2f', mandatory=True, diff --git a/nipype/interfaces/freesurfer/tests/test_auto_TalairachAVI.py b/nipype/interfaces/freesurfer/tests/test_auto_TalairachAVI.py index 70b6c3f181..8ce925fcc7 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_TalairachAVI.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_TalairachAVI.py @@ -11,11 +11,6 @@ def test_TalairachAVI_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--i %s', mandatory=True, @@ -25,10 +20,6 @@ def test_TalairachAVI_inputs(): mandatory=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TalairachAVI.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_TalairachQC.py b/nipype/interfaces/freesurfer/tests/test_auto_TalairachQC.py index dda9216579..d07e572365 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_TalairachQC.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_TalairachQC.py @@ -10,21 +10,12 @@ def test_TalairachQC_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), log_file=dict( argstr='%s', mandatory=True, position=0, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TalairachQC.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Tkregister2.py b/nipype/interfaces/freesurfer/tests/test_auto_Tkregister2.py index fa61b93251..17f8e53a1f 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_Tkregister2.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_Tkregister2.py @@ -20,11 +20,6 @@ def test_Tkregister2_inputs(): argstr='--fstarg', xor=['target_image'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), invert_lta_in=dict(requires=['lta_in'], ), invert_lta_out=dict( argstr='--ltaout-inv', @@ -53,10 +48,6 @@ def test_Tkregister2_inputs(): argstr='--targ %s', xor=['fstarg'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xfm=dict(argstr='--xfm %s', ), ) inputs = Tkregister2.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_UnpackSDICOMDir.py b/nipype/interfaces/freesurfer/tests/test_auto_UnpackSDICOMDir.py index 29b2065276..9427e60940 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_UnpackSDICOMDir.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_UnpackSDICOMDir.py @@ -16,11 +16,6 @@ def test_UnpackSDICOMDir_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), log_file=dict(argstr='-log %s', ), no_info_dump=dict(argstr='-noinfodump', ), no_unpack_err=dict(argstr='-no-unpackerr', ), @@ -42,10 +37,6 @@ def test_UnpackSDICOMDir_inputs(): ), spm_zeropad=dict(argstr='-nspmzeropad %d', ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = UnpackSDICOMDir.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_VolumeMask.py b/nipype/interfaces/freesurfer/tests/test_auto_VolumeMask.py index 89f6299d0d..3e898a81f7 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_VolumeMask.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_VolumeMask.py @@ -12,11 +12,6 @@ def test_VolumeMask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_aseg=dict( argstr='--aseg_name %s', xor=['aseg'], @@ -49,10 +44,6 @@ def test_VolumeMask_inputs(): usedefault=True, ), subjects_dir=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = VolumeMask.input_spec() diff --git a/nipype/interfaces/freesurfer/tests/test_auto_WatershedSkullStrip.py b/nipype/interfaces/freesurfer/tests/test_auto_WatershedSkullStrip.py index af9dceda12..3586e7d234 100644 --- a/nipype/interfaces/freesurfer/tests/test_auto_WatershedSkullStrip.py +++ b/nipype/interfaces/freesurfer/tests/test_auto_WatershedSkullStrip.py @@ -14,11 +14,6 @@ def test_WatershedSkullStrip_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -32,10 +27,6 @@ def test_WatershedSkullStrip_inputs(): ), subjects_dir=dict(), t1=dict(argstr='-T1', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict( argstr='%s', position=-3, diff --git a/nipype/interfaces/fsl/tests/test_FILMGLS.py b/nipype/interfaces/fsl/tests/test_FILMGLS.py index 9676486751..a37fc1b116 100644 --- a/nipype/interfaces/fsl/tests/test_FILMGLS.py +++ b/nipype/interfaces/fsl/tests/test_FILMGLS.py @@ -30,7 +30,6 @@ def test_filmgls(): argstr='-ar', ), full_data=dict(argstr='-v', ), - ignore_exception=dict(usedefault=True, ), in_file=dict( mandatory=True, argstr='%s', @@ -87,7 +86,6 @@ def test_filmgls(): argstr='--ar', ), full_data=dict(argstr='-v', ), - ignore_exception=dict(usedefault=True, ), in_file=dict( mandatory=True, argstr='--in=%s', @@ -107,7 +105,6 @@ def test_filmgls(): usedefault=True, ), smooth_autocorr=dict(argstr='--sa', ), - terminal_output=dict(), threshold=dict( usedefault=True, argstr='--thr=%f', diff --git a/nipype/interfaces/fsl/tests/test_auto_AR1Image.py b/nipype/interfaces/fsl/tests/test_auto_AR1Image.py index 45828cd552..32efb1826e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_AR1Image.py +++ b/nipype/interfaces/fsl/tests/test_auto_AR1Image.py @@ -15,11 +15,6 @@ def test_AR1Image_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -44,10 +39,6 @@ def test_AR1Image_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AR1Image.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_AccuracyTester.py b/nipype/interfaces/fsl/tests/test_auto_AccuracyTester.py index bb49910c2a..062d6367f7 100644 --- a/nipype/interfaces/fsl/tests/test_auto_AccuracyTester.py +++ b/nipype/interfaces/fsl/tests/test_auto_AccuracyTester.py @@ -10,11 +10,6 @@ def test_AccuracyTester_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mel_icas=dict( argstr='%s', copyfile=False, @@ -26,10 +21,6 @@ def test_AccuracyTester_inputs(): mandatory=True, position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trained_wts_file=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_ApplyMask.py b/nipype/interfaces/fsl/tests/test_auto_ApplyMask.py index 673c0f17f7..8a39956c18 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ApplyMask.py +++ b/nipype/interfaces/fsl/tests/test_auto_ApplyMask.py @@ -10,11 +10,6 @@ def test_ApplyMask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -44,10 +39,6 @@ def test_ApplyMask_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ApplyMask.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_ApplyTOPUP.py b/nipype/interfaces/fsl/tests/test_auto_ApplyTOPUP.py index 645573a93a..7a803f9695 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ApplyTOPUP.py +++ b/nipype/interfaces/fsl/tests/test_auto_ApplyTOPUP.py @@ -15,11 +15,6 @@ def test_ApplyTOPUP_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='--imain=%s', mandatory=True, @@ -46,10 +41,6 @@ def test_ApplyTOPUP_inputs(): name_template='%s_corrected', ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ApplyTOPUP.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_ApplyWarp.py b/nipype/interfaces/fsl/tests/test_auto_ApplyWarp.py index 8bcbf64307..71977cb873 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ApplyWarp.py +++ b/nipype/interfaces/fsl/tests/test_auto_ApplyWarp.py @@ -16,11 +16,6 @@ def test_ApplyWarp_inputs(): usedefault=True, ), field_file=dict(argstr='--warp=%s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--in=%s', mandatory=True, @@ -52,10 +47,6 @@ def test_ApplyWarp_inputs(): ), superlevel=dict(argstr='--superlevel=%s', ), supersample=dict(argstr='--super', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ApplyWarp.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_ApplyXFM.py b/nipype/interfaces/fsl/tests/test_auto_ApplyXFM.py index adb132db1c..f515be1f04 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ApplyXFM.py +++ b/nipype/interfaces/fsl/tests/test_auto_ApplyXFM.py @@ -55,11 +55,6 @@ def test_ApplyXFM_inputs(): units='degrees', ), force_scaling=dict(argstr='-forcescaling', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -132,10 +127,6 @@ def test_ApplyXFM_inputs(): units='voxels', ), sinc_window=dict(argstr='-sincwindow %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), uses_qform=dict(argstr='-usesqform', ), verbose=dict(argstr='-verbose %d', ), wm_seg=dict( diff --git a/nipype/interfaces/fsl/tests/test_auto_AvScale.py b/nipype/interfaces/fsl/tests/test_auto_AvScale.py index c2c0503c6d..762ada916d 100644 --- a/nipype/interfaces/fsl/tests/test_auto_AvScale.py +++ b/nipype/interfaces/fsl/tests/test_auto_AvScale.py @@ -11,11 +11,6 @@ def test_AvScale_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mat_file=dict( argstr='%s', position=-2, @@ -24,10 +19,6 @@ def test_AvScale_inputs(): argstr='%s', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AvScale.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_B0Calc.py b/nipype/interfaces/fsl/tests/test_auto_B0Calc.py index cdb53b27f4..96ec6b949c 100644 --- a/nipype/interfaces/fsl/tests/test_auto_B0Calc.py +++ b/nipype/interfaces/fsl/tests/test_auto_B0Calc.py @@ -30,11 +30,6 @@ def test_B0Calc_inputs(): argstr='--extendboundary=%0.2f', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -48,10 +43,6 @@ def test_B0Calc_inputs(): position=1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), x_b0=dict( argstr='--b0x=%0.2f', usedefault=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX5.py b/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX5.py index e71e14eba7..b105405c73 100644 --- a/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX5.py +++ b/nipype/interfaces/fsl/tests/test_auto_BEDPOSTX5.py @@ -44,11 +44,6 @@ def test_BEDPOSTX5_inputs(): fudge=dict(argstr='-w %d', ), grad_dev=dict(), gradnonlin=dict(argstr='-g', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), logdir=dict(argstr='--logdir=%s', ), mask=dict(mandatory=True, ), model=dict(argstr='-model %d', ), @@ -86,10 +81,6 @@ def test_BEDPOSTX5_inputs(): usedefault=True, ), seed=dict(argstr='--seed=%d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), update_proposal_every=dict( argstr='--updateproposalevery=%d', usedefault=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_BET.py b/nipype/interfaces/fsl/tests/test_auto_BET.py index 132e7bc402..eccf348b3e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_BET.py +++ b/nipype/interfaces/fsl/tests/test_auto_BET.py @@ -20,11 +20,6 @@ def test_BET_inputs(): xor=('functional', 'reduce_bias', 'robust', 'padding', 'remove_eyes', 'surfaces', 't2_guided'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -76,10 +71,6 @@ def test_BET_inputs(): xor=('functional', 'reduce_bias', 'robust', 'padding', 'remove_eyes', 'surfaces', 't2_guided'), ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='-t', ), vertical_gradient=dict(argstr='-g %.2f', ), ) diff --git a/nipype/interfaces/fsl/tests/test_auto_BinaryMaths.py b/nipype/interfaces/fsl/tests/test_auto_BinaryMaths.py index 28a98758d2..2548ae68e5 100644 --- a/nipype/interfaces/fsl/tests/test_auto_BinaryMaths.py +++ b/nipype/interfaces/fsl/tests/test_auto_BinaryMaths.py @@ -10,11 +10,6 @@ def test_BinaryMaths_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -56,10 +51,6 @@ def test_BinaryMaths_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BinaryMaths.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_ChangeDataType.py b/nipype/interfaces/fsl/tests/test_auto_ChangeDataType.py index 65baf20a6d..aab508f2bf 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ChangeDataType.py +++ b/nipype/interfaces/fsl/tests/test_auto_ChangeDataType.py @@ -10,11 +10,6 @@ def test_ChangeDataType_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -40,10 +35,6 @@ def test_ChangeDataType_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ChangeDataType.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_Classifier.py b/nipype/interfaces/fsl/tests/test_auto_Classifier.py index 3e58078b94..a8db888acb 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Classifier.py +++ b/nipype/interfaces/fsl/tests/test_auto_Classifier.py @@ -11,20 +11,11 @@ def test_Classifier_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mel_ica=dict( argstr='%s', copyfile=False, position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thresh=dict( argstr='%d', mandatory=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_Cleaner.py b/nipype/interfaces/fsl/tests/test_auto_Cleaner.py index 4071ddc41a..5fc505a174 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Cleaner.py +++ b/nipype/interfaces/fsl/tests/test_auto_Cleaner.py @@ -40,15 +40,6 @@ def test_Cleaner_inputs(): position=2, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Cleaner.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_Cluster.py b/nipype/interfaces/fsl/tests/test_auto_Cluster.py index 5ffd5aa485..f876f85e64 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Cluster.py +++ b/nipype/interfaces/fsl/tests/test_auto_Cluster.py @@ -21,11 +21,6 @@ def test_Cluster_inputs(): argstr='--fractional', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--in=%s', mandatory=True, @@ -78,10 +73,6 @@ def test_Cluster_inputs(): requires=['dlh', 'volume'], ), std_space_file=dict(argstr='--stdvol=%s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict( argstr='--thresh=%.10f', mandatory=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_Complex.py b/nipype/interfaces/fsl/tests/test_auto_Complex.py index 2d2bb78508..7e49bcdfa8 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Complex.py +++ b/nipype/interfaces/fsl/tests/test_auto_Complex.py @@ -65,11 +65,6 @@ def test_Complex_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), imaginary_in_file=dict( argstr='%s', position=3, @@ -147,10 +142,6 @@ def test_Complex_inputs(): argstr='%d', position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Complex.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_ContrastMgr.py b/nipype/interfaces/fsl/tests/test_auto_ContrastMgr.py index b2e0ff2098..a82ea8fe43 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ContrastMgr.py +++ b/nipype/interfaces/fsl/tests/test_auto_ContrastMgr.py @@ -21,11 +21,6 @@ def test_ContrastMgr_inputs(): usedefault=True, ), fcon_file=dict(argstr='-f %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), output_type=dict(), param_estimates=dict( argstr='', @@ -44,10 +39,6 @@ def test_ContrastMgr_inputs(): mandatory=True, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ContrastMgr.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_ConvertWarp.py b/nipype/interfaces/fsl/tests/test_auto_ConvertWarp.py index 7bb4b7a760..2ed14aaad2 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ConvertWarp.py +++ b/nipype/interfaces/fsl/tests/test_auto_ConvertWarp.py @@ -15,11 +15,6 @@ def test_ConvertWarp_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), jacobian_max=dict(argstr='--jmax=%f', ), jacobian_min=dict(argstr='--jmin=%f', ), midmat=dict(argstr='--midmat=%s', ), @@ -55,10 +50,6 @@ def test_ConvertWarp_inputs(): requires=['shift_in_file'], ), shift_in_file=dict(argstr='--shiftmap=%s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warp1=dict(argstr='--warp1=%s', ), warp2=dict(argstr='--warp2=%s', ), ) diff --git a/nipype/interfaces/fsl/tests/test_auto_ConvertXFM.py b/nipype/interfaces/fsl/tests/test_auto_ConvertXFM.py index c62ae58546..c017a39a52 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ConvertXFM.py +++ b/nipype/interfaces/fsl/tests/test_auto_ConvertXFM.py @@ -22,11 +22,6 @@ def test_ConvertXFM_inputs(): requires=['in_file2'], xor=['invert_xfm', 'concat_xfm', 'fix_scale_skew'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -48,10 +43,6 @@ def test_ConvertXFM_inputs(): position=1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ConvertXFM.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_CopyGeom.py b/nipype/interfaces/fsl/tests/test_auto_CopyGeom.py index c7d6c5f5c9..c66feff211 100644 --- a/nipype/interfaces/fsl/tests/test_auto_CopyGeom.py +++ b/nipype/interfaces/fsl/tests/test_auto_CopyGeom.py @@ -23,21 +23,12 @@ def test_CopyGeom_inputs(): argstr='-d', position='-1', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, position=0, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = CopyGeom.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_DTIFit.py b/nipype/interfaces/fsl/tests/test_auto_DTIFit.py index 969faf1dc3..8bfdf5f36e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_DTIFit.py +++ b/nipype/interfaces/fsl/tests/test_auto_DTIFit.py @@ -32,11 +32,6 @@ def test_DTIFit_inputs(): usedefault=True, ), gradnonlin=dict(argstr='--gradnonlin=%s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), little_bit=dict(argstr='--littlebit', ), mask=dict( argstr='-m %s', @@ -52,10 +47,6 @@ def test_DTIFit_inputs(): output_type=dict(), save_tensor=dict(argstr='--save_tensor', ), sse=dict(argstr='--sse', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DTIFit.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_DilateImage.py b/nipype/interfaces/fsl/tests/test_auto_DilateImage.py index ad6089b877..3ed43fbd22 100644 --- a/nipype/interfaces/fsl/tests/test_auto_DilateImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_DilateImage.py @@ -10,11 +10,6 @@ def test_DilateImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -58,10 +53,6 @@ def test_DilateImage_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DilateImage.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_DistanceMap.py b/nipype/interfaces/fsl/tests/test_auto_DistanceMap.py index 1efc1f7e07..5f3321de78 100644 --- a/nipype/interfaces/fsl/tests/test_auto_DistanceMap.py +++ b/nipype/interfaces/fsl/tests/test_auto_DistanceMap.py @@ -15,11 +15,6 @@ def test_DistanceMap_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--in=%s', mandatory=True, @@ -31,10 +26,6 @@ def test_DistanceMap_inputs(): ), mask_file=dict(argstr='--mask=%s', ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DistanceMap.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_DualRegression.py b/nipype/interfaces/fsl/tests/test_auto_DualRegression.py index cf407d634e..4c2fdd3ceb 100644 --- a/nipype/interfaces/fsl/tests/test_auto_DualRegression.py +++ b/nipype/interfaces/fsl/tests/test_auto_DualRegression.py @@ -28,11 +28,6 @@ def test_DualRegression_inputs(): mandatory=True, position=1, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', mandatory=True, @@ -55,10 +50,6 @@ def test_DualRegression_inputs(): usedefault=True, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DualRegression.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_EPIDeWarp.py b/nipype/interfaces/fsl/tests/test_auto_EPIDeWarp.py index 983d9d2041..2a5f0c86b6 100644 --- a/nipype/interfaces/fsl/tests/test_auto_EPIDeWarp.py +++ b/nipype/interfaces/fsl/tests/test_auto_EPIDeWarp.py @@ -29,11 +29,6 @@ def test_EPIDeWarp_inputs(): argstr='--exfdw %s', genfile=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mag_file=dict( argstr='--mag %s', mandatory=True, @@ -52,10 +47,6 @@ def test_EPIDeWarp_inputs(): argstr='--tediff %s', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tmpdir=dict( argstr='--tmpdir %s', genfile=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_Eddy.py b/nipype/interfaces/fsl/tests/test_auto_Eddy.py index 0b3d35c5e0..1e3cdf644d 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Eddy.py +++ b/nipype/interfaces/fsl/tests/test_auto_Eddy.py @@ -21,11 +21,6 @@ def test_Eddy_inputs(): usedefault=True, ), fwhm=dict(argstr='--fwhm=%s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_acqp=dict( argstr='--acqp=%s', mandatory=True, @@ -78,10 +73,6 @@ def test_Eddy_inputs(): repol=dict(argstr='--repol', ), session=dict(argstr='--session=%s', ), slm=dict(argstr='--slm=%s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), use_cuda=dict(), ) inputs = Eddy.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_EddyCorrect.py b/nipype/interfaces/fsl/tests/test_auto_EddyCorrect.py index e89747a41f..e88219aa04 100644 --- a/nipype/interfaces/fsl/tests/test_auto_EddyCorrect.py +++ b/nipype/interfaces/fsl/tests/test_auto_EddyCorrect.py @@ -10,11 +10,6 @@ def test_EddyCorrect_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -34,10 +29,6 @@ def test_EddyCorrect_inputs(): position=2, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = EddyCorrect.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_EpiReg.py b/nipype/interfaces/fsl/tests/test_auto_EpiReg.py index 67cf28d1bc..29a935333e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_EpiReg.py +++ b/nipype/interfaces/fsl/tests/test_auto_EpiReg.py @@ -19,11 +19,6 @@ def test_EpiReg_inputs(): fmap=dict(argstr='--fmap=%s', ), fmapmag=dict(argstr='--fmapmag=%s', ), fmapmagbrain=dict(argstr='--fmapmagbrain=%s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), no_clean=dict( argstr='--noclean', usedefault=True, @@ -46,10 +41,6 @@ def test_EpiReg_inputs(): mandatory=True, position=-3, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), weight_image=dict(argstr='--weight=%s', ), wmseg=dict(argstr='--wmseg=%s', ), ) diff --git a/nipype/interfaces/fsl/tests/test_auto_ErodeImage.py b/nipype/interfaces/fsl/tests/test_auto_ErodeImage.py index 88a1c79657..797a403d45 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ErodeImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_ErodeImage.py @@ -10,11 +10,6 @@ def test_ErodeImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -58,10 +53,6 @@ def test_ErodeImage_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ErodeImage.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_ExtractROI.py b/nipype/interfaces/fsl/tests/test_auto_ExtractROI.py index 5b7189a017..df8de64144 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ExtractROI.py +++ b/nipype/interfaces/fsl/tests/test_auto_ExtractROI.py @@ -18,11 +18,6 @@ def test_ExtractROI_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -43,10 +38,6 @@ def test_ExtractROI_inputs(): argstr='%d', position=9, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), x_min=dict( argstr='%d', position=2, diff --git a/nipype/interfaces/fsl/tests/test_auto_FAST.py b/nipype/interfaces/fsl/tests/test_auto_FAST.py index e848fb9442..0b983181af 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FAST.py +++ b/nipype/interfaces/fsl/tests/test_auto_FAST.py @@ -16,11 +16,6 @@ def test_FAST_inputs(): usedefault=True, ), hyper=dict(argstr='-H %.2f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), img_type=dict(argstr='-t %d', ), in_files=dict( argstr='%s', @@ -44,10 +39,6 @@ def test_FAST_inputs(): probability_maps=dict(argstr='-p', ), segment_iters=dict(argstr='-W %d', ), segments=dict(argstr='-g', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), use_priors=dict(argstr='-P', ), verbose=dict(argstr='-v', ), ) diff --git a/nipype/interfaces/fsl/tests/test_auto_FEAT.py b/nipype/interfaces/fsl/tests/test_auto_FEAT.py index 5e9cfb51ce..01fc72506f 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FEAT.py +++ b/nipype/interfaces/fsl/tests/test_auto_FEAT.py @@ -15,16 +15,7 @@ def test_FEAT_inputs(): mandatory=True, position=0, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FEAT.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_FEATModel.py b/nipype/interfaces/fsl/tests/test_auto_FEATModel.py index a66ced2f76..34ea37d47f 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FEATModel.py +++ b/nipype/interfaces/fsl/tests/test_auto_FEATModel.py @@ -22,16 +22,7 @@ def test_FEATModel_inputs(): mandatory=True, position=0, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FEATModel.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_FEATRegister.py b/nipype/interfaces/fsl/tests/test_auto_FEATRegister.py index d09850b5d0..a8f59a0ec3 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FEATRegister.py +++ b/nipype/interfaces/fsl/tests/test_auto_FEATRegister.py @@ -6,11 +6,6 @@ def test_FEATRegister_inputs(): input_map = dict( feat_dirs=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), reg_dof=dict(usedefault=True, ), reg_image=dict(mandatory=True, ), ) diff --git a/nipype/interfaces/fsl/tests/test_auto_FIRST.py b/nipype/interfaces/fsl/tests/test_auto_FIRST.py index 464bb56a24..964ee4922c 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FIRST.py +++ b/nipype/interfaces/fsl/tests/test_auto_FIRST.py @@ -18,11 +18,6 @@ def test_FIRST_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', copyfile=False, @@ -56,10 +51,6 @@ def test_FIRST_inputs(): usedefault=True, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict( argstr='-v', position=1, diff --git a/nipype/interfaces/fsl/tests/test_auto_FLAMEO.py b/nipype/interfaces/fsl/tests/test_auto_FLAMEO.py index 2b9856ff6d..bd335282e3 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FLAMEO.py +++ b/nipype/interfaces/fsl/tests/test_auto_FLAMEO.py @@ -26,11 +26,6 @@ def test_FLAMEO_inputs(): ), f_con_file=dict(argstr='--fcontrastsfile=%s', ), fix_mean=dict(argstr='--fixmean', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), infer_outliers=dict(argstr='--inferoutliers', ), log_dir=dict( argstr='--ld=%s', @@ -54,10 +49,6 @@ def test_FLAMEO_inputs(): argstr='--tcontrastsfile=%s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), var_cope_file=dict(argstr='--varcopefile=%s', ), ) inputs = FLAMEO.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_FLIRT.py b/nipype/interfaces/fsl/tests/test_auto_FLIRT.py index 20bb8fe4c4..0b59550e5a 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FLIRT.py +++ b/nipype/interfaces/fsl/tests/test_auto_FLIRT.py @@ -52,11 +52,6 @@ def test_FLIRT_inputs(): units='degrees', ), force_scaling=dict(argstr='-forcescaling', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -129,10 +124,6 @@ def test_FLIRT_inputs(): units='voxels', ), sinc_window=dict(argstr='-sincwindow %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), uses_qform=dict(argstr='-usesqform', ), verbose=dict(argstr='-verbose %d', ), wm_seg=dict( diff --git a/nipype/interfaces/fsl/tests/test_auto_FNIRT.py b/nipype/interfaces/fsl/tests/test_auto_FNIRT.py index 612947e76f..2b7d0b1b00 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FNIRT.py +++ b/nipype/interfaces/fsl/tests/test_auto_FNIRT.py @@ -36,11 +36,6 @@ def test_FNIRT_inputs(): ), fieldcoeff_file=dict(argstr='--cout=%s', ), hessian_precision=dict(argstr='--numprec=%s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--in=%s', mandatory=True, @@ -116,10 +111,6 @@ def test_FNIRT_inputs(): argstr='--subsamp=%s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warp_resolution=dict(argstr='--warpres=%d,%d,%d', ), warped_file=dict( argstr='--iout=%s', diff --git a/nipype/interfaces/fsl/tests/test_auto_FSLCommand.py b/nipype/interfaces/fsl/tests/test_auto_FSLCommand.py index d7aa1e1832..1d95b77df5 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FSLCommand.py +++ b/nipype/interfaces/fsl/tests/test_auto_FSLCommand.py @@ -10,16 +10,7 @@ def test_FSLCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FSLCommand.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_FSLXCommand.py b/nipype/interfaces/fsl/tests/test_auto_FSLXCommand.py index d317f87fef..b215f70bc7 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FSLXCommand.py +++ b/nipype/interfaces/fsl/tests/test_auto_FSLXCommand.py @@ -51,11 +51,6 @@ def test_FSLXCommand_inputs(): usedefault=True, ), fudge=dict(argstr='--fudge=%d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), logdir=dict( argstr='--logdir=%s', usedefault=True, @@ -93,10 +88,6 @@ def test_FSLXCommand_inputs(): usedefault=True, ), seed=dict(argstr='--seed=%d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), update_proposal_every=dict( argstr='--updateproposalevery=%d', usedefault=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_FUGUE.py b/nipype/interfaces/fsl/tests/test_auto_FUGUE.py index 5a98b48155..0e96f1e867 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FUGUE.py +++ b/nipype/interfaces/fsl/tests/test_auto_FUGUE.py @@ -27,11 +27,6 @@ def test_FUGUE_inputs(): argstr='--icorronly', requires=['unwarped_file'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(argstr='--in=%s', ), mask_file=dict(argstr='--mask=%s', ), median_2dfilter=dict(argstr='--median', ), @@ -57,10 +52,6 @@ def test_FUGUE_inputs(): shift_out_file=dict(argstr='--saveshift=%s', ), smooth2d=dict(argstr='--smooth2=%.2f', ), smooth3d=dict(argstr='--smooth3=%.2f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), unwarp_direction=dict(argstr='--unwarpdir=%s', ), unwarped_file=dict( argstr='--unwarp=%s', diff --git a/nipype/interfaces/fsl/tests/test_auto_FeatureExtractor.py b/nipype/interfaces/fsl/tests/test_auto_FeatureExtractor.py index a4b8060c2d..3945c40a87 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FeatureExtractor.py +++ b/nipype/interfaces/fsl/tests/test_auto_FeatureExtractor.py @@ -10,20 +10,11 @@ def test_FeatureExtractor_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mel_ica=dict( argstr='%s', copyfile=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FeatureExtractor.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_FilterRegressor.py b/nipype/interfaces/fsl/tests/test_auto_FilterRegressor.py index 7e13a4bb85..36cbb979d7 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FilterRegressor.py +++ b/nipype/interfaces/fsl/tests/test_auto_FilterRegressor.py @@ -27,11 +27,6 @@ def test_FilterRegressor_inputs(): position=4, xor=['filter_all'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -46,10 +41,6 @@ def test_FilterRegressor_inputs(): ), out_vnscales=dict(argstr='--out_vnscales', ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), var_norm=dict(argstr='--vn', ), ) inputs = FilterRegressor.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_FindTheBiggest.py b/nipype/interfaces/fsl/tests/test_auto_FindTheBiggest.py index 9e70f50838..3731c842e7 100644 --- a/nipype/interfaces/fsl/tests/test_auto_FindTheBiggest.py +++ b/nipype/interfaces/fsl/tests/test_auto_FindTheBiggest.py @@ -10,11 +10,6 @@ def test_FindTheBiggest_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', mandatory=True, @@ -27,10 +22,6 @@ def test_FindTheBiggest_inputs(): position=2, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FindTheBiggest.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_GLM.py b/nipype/interfaces/fsl/tests/test_auto_GLM.py index 86e0ec995f..1dbf7eba19 100644 --- a/nipype/interfaces/fsl/tests/test_auto_GLM.py +++ b/nipype/interfaces/fsl/tests/test_auto_GLM.py @@ -20,11 +20,6 @@ def test_GLM_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -50,10 +45,6 @@ def test_GLM_inputs(): out_vnscales_name=dict(argstr='--out_vnscales=%s', ), out_z_name=dict(argstr='--out_z=%s', ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), var_norm=dict(argstr='--vn', ), ) inputs = GLM.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_ICA_AROMA.py b/nipype/interfaces/fsl/tests/test_auto_ICA_AROMA.py index f51b9b315e..05bbb5b106 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ICA_AROMA.py +++ b/nipype/interfaces/fsl/tests/test_auto_ICA_AROMA.py @@ -28,11 +28,6 @@ def test_ICA_AROMA_inputs(): argstr='-warp %s', xor=['feat_dir'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -57,10 +52,6 @@ def test_ICA_AROMA_inputs(): mandatory=True, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ICA_AROMA.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_ImageMaths.py b/nipype/interfaces/fsl/tests/test_auto_ImageMaths.py index 4dcf156964..6d4e06827e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ImageMaths.py +++ b/nipype/interfaces/fsl/tests/test_auto_ImageMaths.py @@ -10,11 +10,6 @@ def test_ImageMaths_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -41,10 +36,6 @@ def test_ImageMaths_inputs(): ), output_type=dict(), suffix=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ImageMaths.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_ImageMeants.py b/nipype/interfaces/fsl/tests/test_auto_ImageMeants.py index be411b577c..042f93112b 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ImageMeants.py +++ b/nipype/interfaces/fsl/tests/test_auto_ImageMeants.py @@ -11,11 +11,6 @@ def test_ImageMeants_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -35,10 +30,6 @@ def test_ImageMeants_inputs(): output_type=dict(), show_all=dict(argstr='--showall', ), spatial_coord=dict(argstr='-c %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transpose=dict(argstr='--transpose', ), use_mm=dict(argstr='--usemm', ), ) diff --git a/nipype/interfaces/fsl/tests/test_auto_ImageStats.py b/nipype/interfaces/fsl/tests/test_auto_ImageStats.py index 173e16d9ad..91a6059798 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ImageStats.py +++ b/nipype/interfaces/fsl/tests/test_auto_ImageStats.py @@ -10,11 +10,6 @@ def test_ImageStats_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -31,10 +26,6 @@ def test_ImageStats_inputs(): argstr='-t', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ImageStats.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_InvWarp.py b/nipype/interfaces/fsl/tests/test_auto_InvWarp.py index 3651e2ec5f..973f42ea34 100644 --- a/nipype/interfaces/fsl/tests/test_auto_InvWarp.py +++ b/nipype/interfaces/fsl/tests/test_auto_InvWarp.py @@ -14,11 +14,6 @@ def test_InvWarp_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inverse_warp=dict( argstr='--out=%s', hash_files=False, @@ -39,10 +34,6 @@ def test_InvWarp_inputs(): argstr='--rel', xor=['absolute'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warp=dict( argstr='--warp=%s', mandatory=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py b/nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py index 65d2ab3c1c..4b6192c98d 100644 --- a/nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py +++ b/nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py @@ -16,11 +16,6 @@ def test_IsotropicSmooth_inputs(): position=4, xor=['sigma'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -51,10 +46,6 @@ def test_IsotropicSmooth_inputs(): position=4, xor=['fwhm'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = IsotropicSmooth.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_L2Model.py b/nipype/interfaces/fsl/tests/test_auto_L2Model.py index f174668168..9d3588666f 100644 --- a/nipype/interfaces/fsl/tests/test_auto_L2Model.py +++ b/nipype/interfaces/fsl/tests/test_auto_L2Model.py @@ -4,14 +4,7 @@ def test_L2Model_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - num_copes=dict(mandatory=True, ), - ) + input_map = dict(num_copes=dict(mandatory=True, ), ) inputs = L2Model.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/fsl/tests/test_auto_Level1Design.py b/nipype/interfaces/fsl/tests/test_auto_Level1Design.py index 75e075ab49..45451f8eff 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Level1Design.py +++ b/nipype/interfaces/fsl/tests/test_auto_Level1Design.py @@ -7,11 +7,6 @@ def test_Level1Design_inputs(): input_map = dict( bases=dict(mandatory=True, ), contrasts=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), interscan_interval=dict(mandatory=True, ), model_serial_correlations=dict(mandatory=True, ), orthogonalization=dict(usedefault=True, ), diff --git a/nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py b/nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py index c7ad885daf..daeca07b10 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py +++ b/nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py @@ -13,11 +13,6 @@ def test_MCFLIRT_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -42,10 +37,6 @@ def test_MCFLIRT_inputs(): smooth=dict(argstr='-smooth %.2f', ), stages=dict(argstr='-stages %d', ), stats_imgs=dict(argstr='-stats', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), use_contour=dict(argstr='-edge', ), use_gradient=dict(argstr='-gdt', ), ) diff --git a/nipype/interfaces/fsl/tests/test_auto_MELODIC.py b/nipype/interfaces/fsl/tests/test_auto_MELODIC.py index ecfbbf8fd0..b22078c450 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MELODIC.py +++ b/nipype/interfaces/fsl/tests/test_auto_MELODIC.py @@ -19,11 +19,6 @@ def test_MELODIC_inputs(): ), epsilon=dict(argstr='--eps=%f', ), epsilonS=dict(argstr='--epsS=%f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='-i %s', mandatory=True, @@ -69,10 +64,6 @@ def test_MELODIC_inputs(): smode=dict(argstr='--smode=%s', ), t_con=dict(argstr='--Tcon=%s', ), t_des=dict(argstr='--Tdes=%s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tr_sec=dict(argstr='--tr=%f', ), update_mask=dict(argstr='--update_mask', ), var_norm=dict(argstr='--vn', ), diff --git a/nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py b/nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py index 70c536022d..c7a5a3e465 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py +++ b/nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py @@ -10,11 +10,6 @@ def test_MakeDyadicVectors_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mask=dict( argstr='%s', position=2, @@ -35,10 +30,6 @@ def test_MakeDyadicVectors_inputs(): mandatory=True, position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), theta_vol=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_MathsCommand.py b/nipype/interfaces/fsl/tests/test_auto_MathsCommand.py index 62d91100e0..64b0f8b089 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MathsCommand.py +++ b/nipype/interfaces/fsl/tests/test_auto_MathsCommand.py @@ -10,11 +10,6 @@ def test_MathsCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -39,10 +34,6 @@ def test_MathsCommand_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MathsCommand.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_MaxImage.py b/nipype/interfaces/fsl/tests/test_auto_MaxImage.py index 54e2e48f48..9910f9c4e8 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MaxImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_MaxImage.py @@ -15,11 +15,6 @@ def test_MaxImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -44,10 +39,6 @@ def test_MaxImage_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MaxImage.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_MaxnImage.py b/nipype/interfaces/fsl/tests/test_auto_MaxnImage.py index 786e2370ff..f49c5f462c 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MaxnImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_MaxnImage.py @@ -15,11 +15,6 @@ def test_MaxnImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -44,10 +39,6 @@ def test_MaxnImage_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MaxnImage.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_MeanImage.py b/nipype/interfaces/fsl/tests/test_auto_MeanImage.py index 7129923ed2..2172dcfa9e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MeanImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_MeanImage.py @@ -15,11 +15,6 @@ def test_MeanImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -44,10 +39,6 @@ def test_MeanImage_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MeanImage.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_MedianImage.py b/nipype/interfaces/fsl/tests/test_auto_MedianImage.py index ec21fd00c5..c14bf8d839 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MedianImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_MedianImage.py @@ -15,11 +15,6 @@ def test_MedianImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -44,10 +39,6 @@ def test_MedianImage_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MedianImage.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_Merge.py b/nipype/interfaces/fsl/tests/test_auto_Merge.py index 15d66dc07b..826270239e 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Merge.py +++ b/nipype/interfaces/fsl/tests/test_auto_Merge.py @@ -15,11 +15,6 @@ def test_Merge_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', mandatory=True, @@ -33,10 +28,6 @@ def test_Merge_inputs(): position=1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tr=dict( argstr='%.2f', position=-1, diff --git a/nipype/interfaces/fsl/tests/test_auto_MinImage.py b/nipype/interfaces/fsl/tests/test_auto_MinImage.py index 2237aec45d..4e9002c259 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MinImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_MinImage.py @@ -15,11 +15,6 @@ def test_MinImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -44,10 +39,6 @@ def test_MinImage_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MinImage.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py b/nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py index 272017a155..97d2426b53 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py +++ b/nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py @@ -11,11 +11,6 @@ def test_MotionOutliers_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -45,10 +40,6 @@ def test_MotionOutliers_inputs(): name_template='%s_metrics.txt', ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='--thresh=%g', ), ) inputs = MotionOutliers.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py b/nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py index 5d6af66596..50a2977a4c 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py +++ b/nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py @@ -10,11 +10,6 @@ def test_MultiImageMaths_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -45,10 +40,6 @@ def test_MultiImageMaths_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MultiImageMaths.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py b/nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py index 52a36111e7..78bd97ff85 100644 --- a/nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py +++ b/nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py @@ -7,11 +7,6 @@ def test_MultipleRegressDesign_inputs(): input_map = dict( contrasts=dict(mandatory=True, ), groups=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), regressors=dict(mandatory=True, ), ) inputs = MultipleRegressDesign.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_Overlay.py b/nipype/interfaces/fsl/tests/test_auto_Overlay.py index 133e75ac56..9818ae1eda 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Overlay.py +++ b/nipype/interfaces/fsl/tests/test_auto_Overlay.py @@ -33,11 +33,6 @@ def test_Overlay_inputs(): position=5, xor=('auto_thresh_bg', 'full_bg_range', 'bg_thresh'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), out_file=dict( argstr='%s', genfile=True, @@ -74,10 +69,6 @@ def test_Overlay_inputs(): argstr='%.2f %.2f', position=10, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transparency=dict( argstr='%s', position=1, diff --git a/nipype/interfaces/fsl/tests/test_auto_PRELUDE.py b/nipype/interfaces/fsl/tests/test_auto_PRELUDE.py index fd1b59f91a..328a8e3272 100644 --- a/nipype/interfaces/fsl/tests/test_auto_PRELUDE.py +++ b/nipype/interfaces/fsl/tests/test_auto_PRELUDE.py @@ -16,11 +16,6 @@ def test_PRELUDE_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), label_file=dict( argstr='--labels=%s', hash_files=False, @@ -57,10 +52,6 @@ def test_PRELUDE_inputs(): hash_files=False, ), start=dict(argstr='--start=%d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='--thresh=%.10f', ), unwrapped_phase_file=dict( argstr='--unwrap=%s', diff --git a/nipype/interfaces/fsl/tests/test_auto_PercentileImage.py b/nipype/interfaces/fsl/tests/test_auto_PercentileImage.py index 9e1f5462e5..4e08c18db0 100644 --- a/nipype/interfaces/fsl/tests/test_auto_PercentileImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_PercentileImage.py @@ -15,11 +15,6 @@ def test_PercentileImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -48,10 +43,6 @@ def test_PercentileImage_inputs(): argstr='%f', position=5, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = PercentileImage.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py b/nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py index 9825583ef9..45a5b43945 100644 --- a/nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py +++ b/nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py @@ -10,11 +10,6 @@ def test_PlotMotionParams_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -32,10 +27,6 @@ def test_PlotMotionParams_inputs(): argstr='%s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = PlotMotionParams.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py b/nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py index a17f89769e..62ced498e1 100644 --- a/nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py +++ b/nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py @@ -10,11 +10,6 @@ def test_PlotTimeSeries_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -42,10 +37,6 @@ def test_PlotTimeSeries_inputs(): xor=('plot_range', ), ), sci_notation=dict(argstr='--sci', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), title=dict(argstr='%s', ), x_precision=dict(argstr='--precision=%d', ), x_units=dict( diff --git a/nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py b/nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py index a09b8e6683..18a812c00b 100644 --- a/nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py +++ b/nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py @@ -10,11 +10,6 @@ def test_PowerSpectrum_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -27,10 +22,6 @@ def test_PowerSpectrum_inputs(): position=1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = PowerSpectrum.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py b/nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py index 33ddb4cd09..66bfd51fab 100644 --- a/nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py +++ b/nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py @@ -16,11 +16,6 @@ def test_PrepareFieldmap_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_magnitude=dict( argstr='%s', mandatory=True, @@ -46,10 +41,6 @@ def test_PrepareFieldmap_inputs(): position=1, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = PrepareFieldmap.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py b/nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py index ef5dc6b288..5368d0dd37 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py +++ b/nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py @@ -20,11 +20,6 @@ def test_ProbTrackX_inputs(): usedefault=True, ), fsamples=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inv_xfm=dict(argstr='--invxfm=%s', ), loop_check=dict(argstr='--loopcheck', ), mask=dict( @@ -71,10 +66,6 @@ def test_ProbTrackX_inputs(): step_length=dict(argstr='--steplength=%.3f', ), stop_mask=dict(argstr='--stop=%s', ), target_masks=dict(argstr='--targetmasks=%s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thsamples=dict(mandatory=True, ), use_anisotropy=dict(argstr='--usef', ), verbose=dict(argstr='--verbose=%d', ), diff --git a/nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py b/nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py index 5eac35d6e5..8592b5ae1a 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py +++ b/nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py @@ -24,11 +24,6 @@ def test_ProbTrackX2_inputs(): usedefault=True, ), fsamples=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inv_xfm=dict(argstr='--invxfm=%s', ), loop_check=dict(argstr='--loopcheck', ), lrtarget3=dict(argstr='--lrtarget3=%s', ), @@ -86,10 +81,6 @@ def test_ProbTrackX2_inputs(): target3=dict(argstr='--target3=%s', ), target4=dict(argstr='--target4=%s', ), target_masks=dict(argstr='--targetmasks=%s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thsamples=dict(mandatory=True, ), use_anisotropy=dict(argstr='--usef', ), verbose=dict(argstr='--verbose=%d', ), diff --git a/nipype/interfaces/fsl/tests/test_auto_ProjThresh.py b/nipype/interfaces/fsl/tests/test_auto_ProjThresh.py index c1010e49b8..dc3878e2c0 100644 --- a/nipype/interfaces/fsl/tests/test_auto_ProjThresh.py +++ b/nipype/interfaces/fsl/tests/test_auto_ProjThresh.py @@ -10,21 +10,12 @@ def test_ProjThresh_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', mandatory=True, position=0, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict( argstr='%d', mandatory=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_Randomise.py b/nipype/interfaces/fsl/tests/test_auto_Randomise.py index 52a4cac3bf..3d52347265 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Randomise.py +++ b/nipype/interfaces/fsl/tests/test_auto_Randomise.py @@ -26,11 +26,6 @@ def test_Randomise_inputs(): f_cm_thresh=dict(argstr='-S %.2f', ), f_only=dict(argstr='--f_only', ), fcon=dict(argstr='-f %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -49,10 +44,6 @@ def test_Randomise_inputs(): argstr='-t %s', position=3, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tfce=dict(argstr='-T', ), tfce2D=dict(argstr='--T2', ), tfce_C=dict(argstr='--tfce_C=%.2f', ), diff --git a/nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py b/nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py index 6b4d4fe372..76647d82d8 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py +++ b/nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py @@ -10,11 +10,6 @@ def test_Reorient2Std_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -25,10 +20,6 @@ def test_Reorient2Std_inputs(): hash_files=False, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Reorient2Std.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_RobustFOV.py b/nipype/interfaces/fsl/tests/test_auto_RobustFOV.py index ad1c5bfeda..e1cbac6fc9 100644 --- a/nipype/interfaces/fsl/tests/test_auto_RobustFOV.py +++ b/nipype/interfaces/fsl/tests/test_auto_RobustFOV.py @@ -11,11 +11,6 @@ def test_RobustFOV_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -34,10 +29,6 @@ def test_RobustFOV_inputs(): name_template='%s_to_ROI', ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = RobustFOV.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_SMM.py b/nipype/interfaces/fsl/tests/test_auto_SMM.py index 6509764023..1e1cc308cc 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SMM.py +++ b/nipype/interfaces/fsl/tests/test_auto_SMM.py @@ -10,11 +10,6 @@ def test_SMM_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mask=dict( argstr='--mask="%s"', copyfile=False, @@ -32,10 +27,6 @@ def test_SMM_inputs(): mandatory=True, position=0, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SMM.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_SUSAN.py b/nipype/interfaces/fsl/tests/test_auto_SUSAN.py index 4fa56ce58a..ebbef0d427 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SUSAN.py +++ b/nipype/interfaces/fsl/tests/test_auto_SUSAN.py @@ -25,11 +25,6 @@ def test_SUSAN_inputs(): mandatory=True, position=3, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -42,10 +37,6 @@ def test_SUSAN_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), usans=dict( argstr='', position=6, diff --git a/nipype/interfaces/fsl/tests/test_auto_SigLoss.py b/nipype/interfaces/fsl/tests/test_auto_SigLoss.py index d55f250774..f3be97b350 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SigLoss.py +++ b/nipype/interfaces/fsl/tests/test_auto_SigLoss.py @@ -11,11 +11,6 @@ def test_SigLoss_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -27,10 +22,6 @@ def test_SigLoss_inputs(): ), output_type=dict(), slice_direction=dict(argstr='-d %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SigLoss.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_Slice.py b/nipype/interfaces/fsl/tests/test_auto_Slice.py index da2285a817..d1e9093e37 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Slice.py +++ b/nipype/interfaces/fsl/tests/test_auto_Slice.py @@ -10,11 +10,6 @@ def test_Slice_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', copyfile=False, @@ -26,10 +21,6 @@ def test_Slice_inputs(): position=1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Slice.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_SliceTimer.py b/nipype/interfaces/fsl/tests/test_auto_SliceTimer.py index 4d5ec0777b..75b9918ad9 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SliceTimer.py +++ b/nipype/interfaces/fsl/tests/test_auto_SliceTimer.py @@ -13,11 +13,6 @@ def test_SliceTimer_inputs(): usedefault=True, ), global_shift=dict(argstr='--tglobal', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--in=%s', mandatory=True, @@ -32,10 +27,6 @@ def test_SliceTimer_inputs(): ), output_type=dict(), slice_direction=dict(argstr='--direction=%d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), time_repetition=dict(argstr='--repeat=%f', ), ) inputs = SliceTimer.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_Slicer.py b/nipype/interfaces/fsl/tests/test_auto_Slicer.py index 1f149e8e7c..d313cda474 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Slicer.py +++ b/nipype/interfaces/fsl/tests/test_auto_Slicer.py @@ -24,11 +24,6 @@ def test_Slicer_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_edges=dict( argstr='%s', position=2, @@ -92,10 +87,6 @@ def test_Slicer_inputs(): argstr='-%d', position=11, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold_edges=dict( argstr='-e %.3f', position=6, diff --git a/nipype/interfaces/fsl/tests/test_auto_Smooth.py b/nipype/interfaces/fsl/tests/test_auto_Smooth.py index e1ac043f5f..e8d8e06117 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Smooth.py +++ b/nipype/interfaces/fsl/tests/test_auto_Smooth.py @@ -16,11 +16,6 @@ def test_Smooth_inputs(): position=1, xor=['sigma'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -40,10 +35,6 @@ def test_Smooth_inputs(): name_template='%s_smooth', position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Smooth.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_SmoothEstimate.py b/nipype/interfaces/fsl/tests/test_auto_SmoothEstimate.py index 4637f59ca1..df7544f931 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SmoothEstimate.py +++ b/nipype/interfaces/fsl/tests/test_auto_SmoothEstimate.py @@ -15,11 +15,6 @@ def test_SmoothEstimate_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mask_file=dict( argstr='--mask=%s', mandatory=True, @@ -29,10 +24,6 @@ def test_SmoothEstimate_inputs(): argstr='--res=%s', requires=['dof'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), zstat_file=dict( argstr='--zstat=%s', xor=['dof'], diff --git a/nipype/interfaces/fsl/tests/test_auto_SpatialFilter.py b/nipype/interfaces/fsl/tests/test_auto_SpatialFilter.py index e6a1ef0481..d62f904655 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SpatialFilter.py +++ b/nipype/interfaces/fsl/tests/test_auto_SpatialFilter.py @@ -10,11 +10,6 @@ def test_SpatialFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -58,10 +53,6 @@ def test_SpatialFilter_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SpatialFilter.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_Split.py b/nipype/interfaces/fsl/tests/test_auto_Split.py index e04e0a0288..cec2ab462d 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Split.py +++ b/nipype/interfaces/fsl/tests/test_auto_Split.py @@ -15,11 +15,6 @@ def test_Split_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -30,10 +25,6 @@ def test_Split_inputs(): position=1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Split.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_StdImage.py b/nipype/interfaces/fsl/tests/test_auto_StdImage.py index 6255163bb1..302ab9c4c2 100644 --- a/nipype/interfaces/fsl/tests/test_auto_StdImage.py +++ b/nipype/interfaces/fsl/tests/test_auto_StdImage.py @@ -15,11 +15,6 @@ def test_StdImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -44,10 +39,6 @@ def test_StdImage_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = StdImage.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py b/nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py index 3dba8ffe44..7cbb57491c 100644 --- a/nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py +++ b/nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py @@ -10,11 +10,6 @@ def test_SwapDimensions_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -30,10 +25,6 @@ def test_SwapDimensions_inputs(): hash_files=False, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SwapDimensions.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_TOPUP.py b/nipype/interfaces/fsl/tests/test_auto_TOPUP.py index eb7e236287..0e7e89e4e3 100644 --- a/nipype/interfaces/fsl/tests/test_auto_TOPUP.py +++ b/nipype/interfaces/fsl/tests/test_auto_TOPUP.py @@ -30,11 +30,6 @@ def test_TOPUP_inputs(): argstr='--fwhm=%f', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--imain=%s', mandatory=True, @@ -108,10 +103,6 @@ def test_TOPUP_inputs(): argstr='--subsamp=%d', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warp_res=dict( argstr='--warpres=%f', usedefault=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py b/nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py index e089c2d7e8..c762b99d31 100644 --- a/nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py +++ b/nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py @@ -15,11 +15,6 @@ def test_TemporalFilter_inputs(): position=4, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -49,10 +44,6 @@ def test_TemporalFilter_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TemporalFilter.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_Threshold.py b/nipype/interfaces/fsl/tests/test_auto_Threshold.py index fe2a5e3012..5c2bb46cc8 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Threshold.py +++ b/nipype/interfaces/fsl/tests/test_auto_Threshold.py @@ -11,11 +11,6 @@ def test_Threshold_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -40,10 +35,6 @@ def test_Threshold_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thresh=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py b/nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py index fa15f89f2c..4308ee8153 100644 --- a/nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py +++ b/nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py @@ -14,11 +14,6 @@ def test_TractSkeleton_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -31,10 +26,6 @@ def test_TractSkeleton_inputs(): projected_data=dict(), search_mask_file=dict(xor=['use_cingulum_mask'], ), skeleton_file=dict(argstr='-o %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(), use_cingulum_mask=dict( usedefault=True, diff --git a/nipype/interfaces/fsl/tests/test_auto_Training.py b/nipype/interfaces/fsl/tests/test_auto_Training.py index 3d988c28f8..91d48e4c01 100644 --- a/nipype/interfaces/fsl/tests/test_auto_Training.py +++ b/nipype/interfaces/fsl/tests/test_auto_Training.py @@ -10,11 +10,6 @@ def test_Training_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), loo=dict( argstr='-l', position=2, @@ -24,10 +19,6 @@ def test_Training_inputs(): copyfile=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trained_wts_filestem=dict( argstr='%s', position=1, diff --git a/nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py b/nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py index 362bc171bd..18ef078a79 100644 --- a/nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py +++ b/nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py @@ -5,17 +5,11 @@ def test_TrainingSetCreator_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mel_icas_in=dict( argstr='%s', copyfile=False, position=-1, - ), - ) + ), ) inputs = TrainingSetCreator.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py b/nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py index abd4547450..a0dcf2610d 100644 --- a/nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py +++ b/nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py @@ -10,11 +10,6 @@ def test_UnaryMaths_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -44,10 +39,6 @@ def test_UnaryMaths_inputs(): position=-1, ), output_type=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = UnaryMaths.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_VecReg.py b/nipype/interfaces/fsl/tests/test_auto_VecReg.py index 77084111cd..61a28f7369 100644 --- a/nipype/interfaces/fsl/tests/test_auto_VecReg.py +++ b/nipype/interfaces/fsl/tests/test_auto_VecReg.py @@ -11,11 +11,6 @@ def test_VecReg_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -35,10 +30,6 @@ def test_VecReg_inputs(): ), rotation_mat=dict(argstr='--rotmat=%s', ), rotation_warp=dict(argstr='--rotwarp=%s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warp_field=dict(argstr='-w %s', ), ) inputs = VecReg.input_spec() diff --git a/nipype/interfaces/fsl/tests/test_auto_WarpPoints.py b/nipype/interfaces/fsl/tests/test_auto_WarpPoints.py index 5cc782a04b..30924223cf 100644 --- a/nipype/interfaces/fsl/tests/test_auto_WarpPoints.py +++ b/nipype/interfaces/fsl/tests/test_auto_WarpPoints.py @@ -22,11 +22,6 @@ def test_WarpPoints_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_coords=dict( argstr='%s', mandatory=True, @@ -41,10 +36,6 @@ def test_WarpPoints_inputs(): argstr='-src %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warp_file=dict( argstr='-warp %s', xor=['xfm_file'], diff --git a/nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py b/nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py index addec3fffa..627ef60ad6 100644 --- a/nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py +++ b/nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py @@ -18,11 +18,6 @@ def test_WarpPointsFromStd_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), img_file=dict( argstr='-img %s', mandatory=True, @@ -36,10 +31,6 @@ def test_WarpPointsFromStd_inputs(): argstr='-std %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warp_file=dict( argstr='-warp %s', xor=['xfm_file'], diff --git a/nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py b/nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py index c2eabbaa75..3d37ad1486 100644 --- a/nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py +++ b/nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py @@ -18,11 +18,6 @@ def test_WarpPointsToStd_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), img_file=dict( argstr='-img %s', mandatory=True, @@ -42,10 +37,6 @@ def test_WarpPointsToStd_inputs(): argstr='-std %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warp_file=dict( argstr='-warp %s', xor=['xfm_file'], diff --git a/nipype/interfaces/fsl/tests/test_auto_WarpUtils.py b/nipype/interfaces/fsl/tests/test_auto_WarpUtils.py index f0ada6ab67..04d3a05f14 100644 --- a/nipype/interfaces/fsl/tests/test_auto_WarpUtils.py +++ b/nipype/interfaces/fsl/tests/test_auto_WarpUtils.py @@ -10,11 +10,6 @@ def test_WarpUtils_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='--in=%s', mandatory=True, @@ -33,10 +28,6 @@ def test_WarpUtils_inputs(): argstr='--ref=%s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warp_resolution=dict(argstr='--warpres=%0.4f,%0.4f,%0.4f', ), with_affine=dict(argstr='--withaff', ), write_jacobian=dict( diff --git a/nipype/interfaces/fsl/tests/test_auto_XFibres5.py b/nipype/interfaces/fsl/tests/test_auto_XFibres5.py index de4b520206..25da78450b 100644 --- a/nipype/interfaces/fsl/tests/test_auto_XFibres5.py +++ b/nipype/interfaces/fsl/tests/test_auto_XFibres5.py @@ -52,11 +52,6 @@ def test_XFibres5_inputs(): ), fudge=dict(argstr='--fudge=%d', ), gradnonlin=dict(argstr='--gradnonlin=%s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), logdir=dict( argstr='--logdir=%s', usedefault=True, @@ -94,10 +89,6 @@ def test_XFibres5_inputs(): usedefault=True, ), seed=dict(argstr='--seed=%d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), update_proposal_every=dict( argstr='--updateproposalevery=%d', usedefault=True, diff --git a/nipype/interfaces/fsl/tests/test_preprocess.py b/nipype/interfaces/fsl/tests/test_preprocess.py index 288a5555a0..4b387201cf 100644 --- a/nipype/interfaces/fsl/tests/test_preprocess.py +++ b/nipype/interfaces/fsl/tests/test_preprocess.py @@ -268,8 +268,8 @@ def test_flirt(setup_flirt): # Skip mandatory inputs and the trait methods if key in ('trait_added', 'trait_modified', 'in_file', 'reference', 'environ', 'output_type', 'out_file', 'out_matrix_file', - 'in_matrix_file', 'apply_xfm', 'ignore_exception', - 'resource_monitor', 'terminal_output', 'out_log', + 'in_matrix_file', 'apply_xfm', + 'resource_monitor', 'out_log', 'save_log'): continue param = None diff --git a/nipype/interfaces/minc/tests/test_auto_Average.py b/nipype/interfaces/minc/tests/test_auto_Average.py index db2309f36e..57bdc5ccd2 100644 --- a/nipype/interfaces/minc/tests/test_auto_Average.py +++ b/nipype/interfaces/minc/tests/test_auto_Average.py @@ -86,11 +86,6 @@ def test_Average_inputs(): 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_files=dict( argstr='%s', mandatory=True, @@ -131,10 +126,6 @@ def test_Average_inputs(): xor=('verbose', 'quiet'), ), sdfile=dict(argstr='-sdfile %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), two=dict(argstr='-2', ), verbose=dict( argstr='-verbose', diff --git a/nipype/interfaces/minc/tests/test_auto_BBox.py b/nipype/interfaces/minc/tests/test_auto_BBox.py index bb6b7bc06e..a34aeab9b5 100644 --- a/nipype/interfaces/minc/tests/test_auto_BBox.py +++ b/nipype/interfaces/minc/tests/test_auto_BBox.py @@ -13,11 +13,6 @@ def test_BBox_inputs(): format_minccrop=dict(argstr='-minccrop', ), format_mincresample=dict(argstr='-mincresample', ), format_mincreshape=dict(argstr='-mincreshape', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -39,10 +34,6 @@ def test_BBox_inputs(): name_template='%s_bbox.txt', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='-threshold', ), two_lines=dict( argstr='-two_lines', diff --git a/nipype/interfaces/minc/tests/test_auto_Beast.py b/nipype/interfaces/minc/tests/test_auto_Beast.py index f01747625b..4834cf3c4a 100644 --- a/nipype/interfaces/minc/tests/test_auto_Beast.py +++ b/nipype/interfaces/minc/tests/test_auto_Beast.py @@ -25,11 +25,6 @@ def test_Beast_inputs(): ), fill_holes=dict(argstr='-fill', ), flip_images=dict(argstr='-flip', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -68,10 +63,6 @@ def test_Beast_inputs(): argstr='-beta %s', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold_patch_selection=dict( argstr='-threshold %s', usedefault=True, diff --git a/nipype/interfaces/minc/tests/test_auto_BestLinReg.py b/nipype/interfaces/minc/tests/test_auto_BestLinReg.py index 19c0cd0cb0..fb9061040a 100644 --- a/nipype/interfaces/minc/tests/test_auto_BestLinReg.py +++ b/nipype/interfaces/minc/tests/test_auto_BestLinReg.py @@ -14,11 +14,6 @@ def test_BestLinReg_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), output_mnc=dict( argstr='%s', genfile=True, @@ -47,10 +42,6 @@ def test_BestLinReg_inputs(): mandatory=True, position=-3, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verbose', ), ) inputs = BestLinReg.input_spec() diff --git a/nipype/interfaces/minc/tests/test_auto_BigAverage.py b/nipype/interfaces/minc/tests/test_auto_BigAverage.py index 4ba3cbf72f..ce1fb2b91e 100644 --- a/nipype/interfaces/minc/tests/test_auto_BigAverage.py +++ b/nipype/interfaces/minc/tests/test_auto_BigAverage.py @@ -14,11 +14,6 @@ def test_BigAverage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_files=dict( argstr='%s', mandatory=True, @@ -41,10 +36,6 @@ def test_BigAverage_inputs(): name_source=['input_files'], name_template='%s_bigaverage_stdev.mnc', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tmpdir=dict(argstr='-tmpdir %s', ), verbose=dict(argstr='--verbose', ), ) diff --git a/nipype/interfaces/minc/tests/test_auto_Blob.py b/nipype/interfaces/minc/tests/test_auto_Blob.py index 3a28435e69..b489ac944a 100644 --- a/nipype/interfaces/minc/tests/test_auto_Blob.py +++ b/nipype/interfaces/minc/tests/test_auto_Blob.py @@ -11,11 +11,6 @@ def test_Blob_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -30,10 +25,6 @@ def test_Blob_inputs(): name_template='%s_blob.mnc', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trace=dict(argstr='-trace', ), translation=dict(argstr='-translation', ), ) diff --git a/nipype/interfaces/minc/tests/test_auto_Blur.py b/nipype/interfaces/minc/tests/test_auto_Blur.py index 7d55ce9903..fb6e405012 100644 --- a/nipype/interfaces/minc/tests/test_auto_Blur.py +++ b/nipype/interfaces/minc/tests/test_auto_Blur.py @@ -30,11 +30,6 @@ def test_Blur_inputs(): xor=('gaussian', 'rect'), ), gradient=dict(argstr='-gradient', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -55,10 +50,6 @@ def test_Blur_inputs(): mandatory=True, xor=('fwhm', 'fwhm3d', 'standard_dev'), ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Blur.input_spec() diff --git a/nipype/interfaces/minc/tests/test_auto_Calc.py b/nipype/interfaces/minc/tests/test_auto_Calc.py index aa8fa85091..7bec782c1c 100644 --- a/nipype/interfaces/minc/tests/test_auto_Calc.py +++ b/nipype/interfaces/minc/tests/test_auto_Calc.py @@ -93,11 +93,6 @@ def test_Calc_inputs(): 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ignore_nan=dict(argstr='-ignore_nan', ), input_files=dict( argstr='%s', @@ -140,10 +135,6 @@ def test_Calc_inputs(): argstr='-quiet', xor=('verbose', 'quiet'), ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), two=dict(argstr='-2', ), verbose=dict( argstr='-verbose', diff --git a/nipype/interfaces/minc/tests/test_auto_Convert.py b/nipype/interfaces/minc/tests/test_auto_Convert.py index 40b67e4374..6df596c682 100644 --- a/nipype/interfaces/minc/tests/test_auto_Convert.py +++ b/nipype/interfaces/minc/tests/test_auto_Convert.py @@ -16,11 +16,6 @@ def test_Convert_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -35,10 +30,6 @@ def test_Convert_inputs(): position=-1, ), template=dict(argstr='-template', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), two=dict(argstr='-2', ), ) inputs = Convert.input_spec() diff --git a/nipype/interfaces/minc/tests/test_auto_Copy.py b/nipype/interfaces/minc/tests/test_auto_Copy.py index d0079de888..e91470ba6d 100644 --- a/nipype/interfaces/minc/tests/test_auto_Copy.py +++ b/nipype/interfaces/minc/tests/test_auto_Copy.py @@ -10,11 +10,6 @@ def test_Copy_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -36,10 +31,6 @@ def test_Copy_inputs(): argstr='-real_values', xor=('pixel_values', 'real_values'), ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Copy.input_spec() diff --git a/nipype/interfaces/minc/tests/test_auto_Dump.py b/nipype/interfaces/minc/tests/test_auto_Dump.py index 052f0cf0f0..bcca2a4801 100644 --- a/nipype/interfaces/minc/tests/test_auto_Dump.py +++ b/nipype/interfaces/minc/tests/test_auto_Dump.py @@ -26,11 +26,6 @@ def test_Dump_inputs(): argstr='-h', xor=('coordinate_data', 'header_data'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -51,10 +46,6 @@ def test_Dump_inputs(): position=-1, ), precision=dict(argstr='%s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), variables=dict( argstr='-v %s', sep=',', diff --git a/nipype/interfaces/minc/tests/test_auto_Extract.py b/nipype/interfaces/minc/tests/test_auto_Extract.py index 80b81fdb2b..77126eac18 100644 --- a/nipype/interfaces/minc/tests/test_auto_Extract.py +++ b/nipype/interfaces/minc/tests/test_auto_Extract.py @@ -65,11 +65,6 @@ def test_Extract_inputs(): argstr='+zdirection', xor=('flip_z_positive', 'flip_z_negative', 'flip_z_any'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_maximum=dict(argstr='-image_maximum %s', ), image_minimum=dict(argstr='-image_minimum %s', ), image_range=dict(argstr='-image_range %s %s', ), @@ -102,10 +97,6 @@ def test_Extract_inputs(): argstr='-start %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), write_ascii=dict( argstr='-ascii', xor=('write_ascii', 'write_ascii', 'write_byte', 'write_short', diff --git a/nipype/interfaces/minc/tests/test_auto_Gennlxfm.py b/nipype/interfaces/minc/tests/test_auto_Gennlxfm.py index a1909e2fe0..c89dc65de6 100644 --- a/nipype/interfaces/minc/tests/test_auto_Gennlxfm.py +++ b/nipype/interfaces/minc/tests/test_auto_Gennlxfm.py @@ -15,11 +15,6 @@ def test_Gennlxfm_inputs(): usedefault=True, ), ident=dict(argstr='-ident', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), like=dict(argstr='-like %s', ), output_file=dict( argstr='%s', @@ -30,10 +25,6 @@ def test_Gennlxfm_inputs(): position=-1, ), step=dict(argstr='-step %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verbose', ), ) inputs = Gennlxfm.input_spec() diff --git a/nipype/interfaces/minc/tests/test_auto_Math.py b/nipype/interfaces/minc/tests/test_auto_Math.py index 3406f50571..1d011034d2 100644 --- a/nipype/interfaces/minc/tests/test_auto_Math.py +++ b/nipype/interfaces/minc/tests/test_auto_Math.py @@ -93,11 +93,6 @@ def test_Math_inputs(): 'format_int', 'format_long', 'format_float', 'format_double', 'format_signed', 'format_unsigned'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ignore_nan=dict(argstr='-ignore_nan', ), input_files=dict( argstr='%s', @@ -151,10 +146,6 @@ def test_Math_inputs(): segment=dict(argstr='-segment -const2 %s %s', ), sqrt=dict(argstr='-sqrt', ), square=dict(argstr='-square', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), test_eq=dict(argstr='-eq', ), test_ge=dict(argstr='-ge', ), test_gt=dict(argstr='-gt', ), diff --git a/nipype/interfaces/minc/tests/test_auto_NlpFit.py b/nipype/interfaces/minc/tests/test_auto_NlpFit.py index 990b9dfe82..1a728a90dd 100644 --- a/nipype/interfaces/minc/tests/test_auto_NlpFit.py +++ b/nipype/interfaces/minc/tests/test_auto_NlpFit.py @@ -18,11 +18,6 @@ def test_NlpFit_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), init_xfm=dict( argstr='-init_xfm %s', mandatory=True, @@ -47,10 +42,6 @@ def test_NlpFit_inputs(): mandatory=True, position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verbose', ), ) inputs = NlpFit.input_spec() diff --git a/nipype/interfaces/minc/tests/test_auto_Norm.py b/nipype/interfaces/minc/tests/test_auto_Norm.py index 15f47b16ad..3a0d28f06d 100644 --- a/nipype/interfaces/minc/tests/test_auto_Norm.py +++ b/nipype/interfaces/minc/tests/test_auto_Norm.py @@ -19,11 +19,6 @@ def test_Norm_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -47,10 +42,6 @@ def test_Norm_inputs(): name_source=['input_file'], name_template='%s_norm_threshold_mask.mnc', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='-threshold', ), threshold_blur=dict(argstr='-threshold_blur %s', ), threshold_bmt=dict(argstr='-threshold_bmt', ), diff --git a/nipype/interfaces/minc/tests/test_auto_Pik.py b/nipype/interfaces/minc/tests/test_auto_Pik.py index 85e601a27f..d74d9a86ad 100644 --- a/nipype/interfaces/minc/tests/test_auto_Pik.py +++ b/nipype/interfaces/minc/tests/test_auto_Pik.py @@ -24,11 +24,6 @@ def test_Pik_inputs(): argstr='--horizontal', xor=('vertical_triplanar_view', 'horizontal_triplanar_view'), ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_range=dict( argstr='--image_range %s %s', xor=('image_range', 'auto_range'), @@ -70,10 +65,6 @@ def test_Pik_inputs(): xor=('slice_z', 'slice_y', 'slice_x'), ), start=dict(argstr='--slice %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tile_size=dict(argstr='--tilesize %s', ), title=dict(argstr='%s', ), title_size=dict( diff --git a/nipype/interfaces/minc/tests/test_auto_Resample.py b/nipype/interfaces/minc/tests/test_auto_Resample.py index abce0a6c79..bd00bd224d 100644 --- a/nipype/interfaces/minc/tests/test_auto_Resample.py +++ b/nipype/interfaces/minc/tests/test_auto_Resample.py @@ -82,11 +82,6 @@ def test_Resample_inputs(): argstr='-width %s', requires=['sinc_interpolation'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -160,10 +155,6 @@ def test_Resample_inputs(): xor=('nelements', 'nelements_x_y_or_z'), ), talairach=dict(argstr='-talairach', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformation=dict(argstr='-transformation %s', ), transverse_slices=dict( argstr='-transverse', diff --git a/nipype/interfaces/minc/tests/test_auto_Reshape.py b/nipype/interfaces/minc/tests/test_auto_Reshape.py index 773a51563d..45e6ddeb4a 100644 --- a/nipype/interfaces/minc/tests/test_auto_Reshape.py +++ b/nipype/interfaces/minc/tests/test_auto_Reshape.py @@ -14,11 +14,6 @@ def test_Reshape_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -32,10 +27,6 @@ def test_Reshape_inputs(): name_template='%s_reshape.mnc', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verbose', ), write_short=dict(argstr='-short', ), ) diff --git a/nipype/interfaces/minc/tests/test_auto_ToEcat.py b/nipype/interfaces/minc/tests/test_auto_ToEcat.py index 97d1b4c2db..26a3ac0436 100644 --- a/nipype/interfaces/minc/tests/test_auto_ToEcat.py +++ b/nipype/interfaces/minc/tests/test_auto_ToEcat.py @@ -17,11 +17,6 @@ def test_ToEcat_inputs(): ignore_ecat_main=dict(argstr='-ignore_ecat_main', ), ignore_ecat_subheader_variable=dict( argstr='-ignore_ecat_subheader_variable', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ignore_patient_variable=dict(argstr='-ignore_patient_variable', ), ignore_study_variable=dict(argstr='-ignore_study_variable', ), input_file=dict( @@ -39,10 +34,6 @@ def test_ToEcat_inputs(): name_template='%s_to_ecat.v', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxels_as_integers=dict(argstr='-label', ), ) inputs = ToEcat.input_spec() diff --git a/nipype/interfaces/minc/tests/test_auto_ToRaw.py b/nipype/interfaces/minc/tests/test_auto_ToRaw.py index 66463e38ef..e010da322d 100644 --- a/nipype/interfaces/minc/tests/test_auto_ToRaw.py +++ b/nipype/interfaces/minc/tests/test_auto_ToRaw.py @@ -10,11 +10,6 @@ def test_ToRaw_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -40,10 +35,6 @@ def test_ToRaw_inputs(): name_template='%s.raw', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), write_byte=dict( argstr='-byte', xor=('write_byte', 'write_short', 'write_int', 'write_long', diff --git a/nipype/interfaces/minc/tests/test_auto_VolSymm.py b/nipype/interfaces/minc/tests/test_auto_VolSymm.py index 96687e56fd..048ffcde9b 100644 --- a/nipype/interfaces/minc/tests/test_auto_VolSymm.py +++ b/nipype/interfaces/minc/tests/test_auto_VolSymm.py @@ -17,11 +17,6 @@ def test_VolSymm_inputs(): ), fit_linear=dict(argstr='-linear', ), fit_nonlinear=dict(argstr='-nonlinear', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -37,10 +32,6 @@ def test_VolSymm_inputs(): name_template='%s_vol_symm.mnc', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trans_file=dict( argstr='%s', genfile=True, diff --git a/nipype/interfaces/minc/tests/test_auto_Volcentre.py b/nipype/interfaces/minc/tests/test_auto_Volcentre.py index f6acddb1b2..b095751a4d 100644 --- a/nipype/interfaces/minc/tests/test_auto_Volcentre.py +++ b/nipype/interfaces/minc/tests/test_auto_Volcentre.py @@ -16,11 +16,6 @@ def test_Volcentre_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -34,10 +29,6 @@ def test_Volcentre_inputs(): name_template='%s_volcentre.mnc', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verbose', ), zero_dircos=dict(argstr='-zero_dircos', ), ) diff --git a/nipype/interfaces/minc/tests/test_auto_Voliso.py b/nipype/interfaces/minc/tests/test_auto_Voliso.py index 6d8309616c..967642a328 100644 --- a/nipype/interfaces/minc/tests/test_auto_Voliso.py +++ b/nipype/interfaces/minc/tests/test_auto_Voliso.py @@ -15,11 +15,6 @@ def test_Voliso_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -35,10 +30,6 @@ def test_Voliso_inputs(): name_template='%s_voliso.mnc', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='--verbose', ), ) inputs = Voliso.input_spec() diff --git a/nipype/interfaces/minc/tests/test_auto_Volpad.py b/nipype/interfaces/minc/tests/test_auto_Volpad.py index 12fb32b1d7..865bc79e69 100644 --- a/nipype/interfaces/minc/tests/test_auto_Volpad.py +++ b/nipype/interfaces/minc/tests/test_auto_Volpad.py @@ -17,11 +17,6 @@ def test_Volpad_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -37,10 +32,6 @@ def test_Volpad_inputs(): ), smooth=dict(argstr='-smooth', ), smooth_distance=dict(argstr='-smooth_distance %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verbose', ), ) inputs = Volpad.input_spec() diff --git a/nipype/interfaces/minc/tests/test_auto_XfmAvg.py b/nipype/interfaces/minc/tests/test_auto_XfmAvg.py index e23df966ca..6d036a0c0e 100644 --- a/nipype/interfaces/minc/tests/test_auto_XfmAvg.py +++ b/nipype/interfaces/minc/tests/test_auto_XfmAvg.py @@ -16,11 +16,6 @@ def test_XfmAvg_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ignore_linear=dict(argstr='-ignore_linear', ), ignore_nonlinear=dict(argstr='-ignore_nonline', ), input_files=dict( @@ -35,10 +30,6 @@ def test_XfmAvg_inputs(): genfile=True, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verbose', ), ) inputs = XfmAvg.input_spec() diff --git a/nipype/interfaces/minc/tests/test_auto_XfmConcat.py b/nipype/interfaces/minc/tests/test_auto_XfmConcat.py index 50f791f4c6..eb748953ef 100644 --- a/nipype/interfaces/minc/tests/test_auto_XfmConcat.py +++ b/nipype/interfaces/minc/tests/test_auto_XfmConcat.py @@ -14,11 +14,6 @@ def test_XfmConcat_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_files=dict( argstr='%s', mandatory=True, @@ -34,10 +29,6 @@ def test_XfmConcat_inputs(): name_template='%s_xfmconcat.xfm', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verbose', ), ) inputs = XfmConcat.input_spec() diff --git a/nipype/interfaces/minc/tests/test_auto_XfmInvert.py b/nipype/interfaces/minc/tests/test_auto_XfmInvert.py index bf19920888..d729e90639 100644 --- a/nipype/interfaces/minc/tests/test_auto_XfmInvert.py +++ b/nipype/interfaces/minc/tests/test_auto_XfmInvert.py @@ -14,11 +14,6 @@ def test_XfmInvert_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_file=dict( argstr='%s', mandatory=True, @@ -29,10 +24,6 @@ def test_XfmInvert_inputs(): genfile=True, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='-verbose', ), ) inputs = XfmInvert.input_spec() diff --git a/nipype/interfaces/mipav/tests/test_auto_JistBrainMgdmSegmentation.py b/nipype/interfaces/mipav/tests/test_auto_JistBrainMgdmSegmentation.py index c062113c4a..16605acbb7 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistBrainMgdmSegmentation.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistBrainMgdmSegmentation.py @@ -10,11 +10,6 @@ def test_JistBrainMgdmSegmentation_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inAdjust=dict(argstr='--inAdjust %s', ), inAtlas=dict(argstr='--inAtlas %s', ), inCompute=dict(argstr='--inCompute %s', ), @@ -48,10 +43,6 @@ def test_JistBrainMgdmSegmentation_inputs(): argstr='--outSegmented %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageDuraEstimation.py b/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageDuraEstimation.py index e03ca11118..ebb65bb789 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageDuraEstimation.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageDuraEstimation.py @@ -10,11 +10,6 @@ def test_JistBrainMp2rageDuraEstimation_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inDistance=dict(argstr='--inDistance %f', ), inSecond=dict(argstr='--inSecond %s', ), inSkull=dict(argstr='--inSkull %s', ), @@ -24,10 +19,6 @@ def test_JistBrainMp2rageDuraEstimation_inputs(): argstr='--outDura %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageSkullStripping.py b/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageSkullStripping.py index ffa970da75..abf794b662 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageSkullStripping.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistBrainMp2rageSkullStripping.py @@ -10,11 +10,6 @@ def test_JistBrainMp2rageSkullStripping_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inFilter=dict(argstr='--inFilter %s', ), inSecond=dict(argstr='--inSecond %s', ), inSkip=dict(argstr='--inSkip %s', ), @@ -37,10 +32,6 @@ def test_JistBrainMp2rageSkullStripping_inputs(): argstr='--outMasked3 %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_JistBrainPartialVolumeFilter.py b/nipype/interfaces/mipav/tests/test_auto_JistBrainPartialVolumeFilter.py index a159256305..bb86144c20 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistBrainPartialVolumeFilter.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistBrainPartialVolumeFilter.py @@ -10,11 +10,6 @@ def test_JistBrainPartialVolumeFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inInput=dict(argstr='--inInput %s', ), inPV=dict(argstr='--inPV %s', ), inoutput=dict(argstr='--inoutput %s', ), @@ -23,10 +18,6 @@ def test_JistBrainPartialVolumeFilter_inputs(): argstr='--outPartial %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_JistCortexSurfaceMeshInflation.py b/nipype/interfaces/mipav/tests/test_auto_JistCortexSurfaceMeshInflation.py index 5ff5b02822..407b9755ca 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistCortexSurfaceMeshInflation.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistCortexSurfaceMeshInflation.py @@ -10,11 +10,6 @@ def test_JistCortexSurfaceMeshInflation_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inLevelset=dict(argstr='--inLevelset %s', ), inLorentzian=dict(argstr='--inLorentzian %s', ), inMax=dict(argstr='--inMax %d', ), @@ -31,10 +26,6 @@ def test_JistCortexSurfaceMeshInflation_inputs(): argstr='--outOriginal %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_JistIntensityMp2rageMasking.py b/nipype/interfaces/mipav/tests/test_auto_JistIntensityMp2rageMasking.py index 93cb74c334..bfdace4944 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistIntensityMp2rageMasking.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistIntensityMp2rageMasking.py @@ -10,11 +10,6 @@ def test_JistIntensityMp2rageMasking_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inBackground=dict(argstr='--inBackground %s', ), inMasking=dict(argstr='--inMasking %s', ), inQuantitative=dict(argstr='--inQuantitative %s', ), @@ -38,10 +33,6 @@ def test_JistIntensityMp2rageMasking_inputs(): argstr='--outSignal_Mask %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileCalculator.py b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileCalculator.py index a07f6bce20..12203a1aa6 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileCalculator.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileCalculator.py @@ -10,11 +10,6 @@ def test_JistLaminarProfileCalculator_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inIntensity=dict(argstr='--inIntensity %s', ), inMask=dict(argstr='--inMask %s', ), incomputed=dict(argstr='--incomputed %s', ), @@ -23,10 +18,6 @@ def test_JistLaminarProfileCalculator_inputs(): argstr='--outResult %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileGeometry.py b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileGeometry.py index f89925af06..ddc4d5d922 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileGeometry.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileGeometry.py @@ -10,11 +10,6 @@ def test_JistLaminarProfileGeometry_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inProfile=dict(argstr='--inProfile %s', ), incomputed=dict(argstr='--incomputed %s', ), inoutside=dict(argstr='--inoutside %f', ), @@ -25,10 +20,6 @@ def test_JistLaminarProfileGeometry_inputs(): argstr='--outResult %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileSampling.py b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileSampling.py index 170ed4b517..58de472b85 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileSampling.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistLaminarProfileSampling.py @@ -10,11 +10,6 @@ def test_JistLaminarProfileSampling_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inCortex=dict(argstr='--inCortex %s', ), inIntensity=dict(argstr='--inIntensity %s', ), inProfile=dict(argstr='--inProfile %s', ), @@ -27,10 +22,6 @@ def test_JistLaminarProfileSampling_inputs(): argstr='--outProfilemapped %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_JistLaminarROIAveraging.py b/nipype/interfaces/mipav/tests/test_auto_JistLaminarROIAveraging.py index 9b5c00e23b..bb9577ccee 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistLaminarROIAveraging.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistLaminarROIAveraging.py @@ -10,11 +10,6 @@ def test_JistLaminarROIAveraging_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inIntensity=dict(argstr='--inIntensity %s', ), inMask=dict(argstr='--inMask %s', ), inROI=dict(argstr='--inROI %s', ), @@ -24,10 +19,6 @@ def test_JistLaminarROIAveraging_inputs(): argstr='--outROI3 %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_JistLaminarVolumetricLayering.py b/nipype/interfaces/mipav/tests/test_auto_JistLaminarVolumetricLayering.py index 268e7a3c9e..4aa9f9d77b 100644 --- a/nipype/interfaces/mipav/tests/test_auto_JistLaminarVolumetricLayering.py +++ b/nipype/interfaces/mipav/tests/test_auto_JistLaminarVolumetricLayering.py @@ -10,11 +10,6 @@ def test_JistLaminarVolumetricLayering_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inInner=dict(argstr='--inInner %s', ), inLayering=dict(argstr='--inLayering %s', ), inLayering2=dict(argstr='--inLayering2 %s', ), @@ -39,10 +34,6 @@ def test_JistLaminarVolumetricLayering_inputs(): argstr='--outLayer %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmImageCalculator.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmImageCalculator.py index 814decb823..016beee263 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmImageCalculator.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmImageCalculator.py @@ -10,11 +10,6 @@ def test_MedicAlgorithmImageCalculator_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inOperation=dict(argstr='--inOperation %s', ), inVolume=dict(argstr='--inVolume %s', ), inVolume2=dict(argstr='--inVolume2 %s', ), @@ -23,10 +18,6 @@ def test_MedicAlgorithmImageCalculator_inputs(): argstr='--outResult %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmLesionToads.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmLesionToads.py index a5b79b4a2e..87f9ab6a72 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmLesionToads.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmLesionToads.py @@ -10,11 +10,6 @@ def test_MedicAlgorithmLesionToads_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inAtlas=dict(argstr='--inAtlas %s', ), inAtlas2=dict(argstr='--inAtlas2 %s', ), inAtlas3=dict(argstr='--inAtlas3 %s', ), @@ -73,10 +68,6 @@ def test_MedicAlgorithmLesionToads_inputs(): argstr='--outWM %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmMipavReorient.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmMipavReorient.py index e64f3a5faa..7c8c7248ad 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmMipavReorient.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmMipavReorient.py @@ -10,11 +10,6 @@ def test_MedicAlgorithmMipavReorient_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inInterpolation=dict(argstr='--inInterpolation %s', ), inNew=dict(argstr='--inNew %s', ), inResolution=dict(argstr='--inResolution %s', ), @@ -32,10 +27,6 @@ def test_MedicAlgorithmMipavReorient_inputs(): argstr='--outReoriented %s', sep=';', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmN3.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmN3.py index 16e6b26144..9d5a148a24 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmN3.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmN3.py @@ -10,11 +10,6 @@ def test_MedicAlgorithmN3_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inAutomatic=dict(argstr='--inAutomatic %s', ), inEnd=dict(argstr='--inEnd %f', ), inField=dict(argstr='--inField %f', ), @@ -33,10 +28,6 @@ def test_MedicAlgorithmN3_inputs(): argstr='--outInhomogeneity2 %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmSPECTRE2010.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmSPECTRE2010.py index d8b873350f..b2d247e9dc 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmSPECTRE2010.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmSPECTRE2010.py @@ -10,11 +10,6 @@ def test_MedicAlgorithmSPECTRE2010_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inApply=dict(argstr='--inApply %s', ), inAtlas=dict(argstr='--inAtlas %s', ), inBackground=dict(argstr='--inBackground %f', ), @@ -86,10 +81,6 @@ def test_MedicAlgorithmSPECTRE2010_inputs(): argstr='--outd0 %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmThresholdToBinaryMask.py b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmThresholdToBinaryMask.py index 3e551c2478..b498025401 100644 --- a/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmThresholdToBinaryMask.py +++ b/nipype/interfaces/mipav/tests/test_auto_MedicAlgorithmThresholdToBinaryMask.py @@ -10,11 +10,6 @@ def test_MedicAlgorithmThresholdToBinaryMask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inLabel=dict( argstr='--inLabel %s', sep=';', @@ -27,10 +22,6 @@ def test_MedicAlgorithmThresholdToBinaryMask_inputs(): argstr='--outBinary %s', sep=';', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mipav/tests/test_auto_RandomVol.py b/nipype/interfaces/mipav/tests/test_auto_RandomVol.py index 1349e7cd90..d3d92142c4 100644 --- a/nipype/interfaces/mipav/tests/test_auto_RandomVol.py +++ b/nipype/interfaces/mipav/tests/test_auto_RandomVol.py @@ -10,11 +10,6 @@ def test_RandomVol_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inField=dict(argstr='--inField %s', ), inLambda=dict(argstr='--inLambda %f', ), inMaximum=dict(argstr='--inMaximum %d', ), @@ -29,10 +24,6 @@ def test_RandomVol_inputs(): argstr='--outRand1 %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), xDefaultMem=dict(argstr='-xDefaultMem %d', ), xMaxProcess=dict( argstr='-xMaxProcess %d', diff --git a/nipype/interfaces/mixins/tests/test_auto_ReportCapableInterface.py b/nipype/interfaces/mixins/tests/test_auto_ReportCapableInterface.py index 5c82724a46..8985d7069d 100644 --- a/nipype/interfaces/mixins/tests/test_auto_ReportCapableInterface.py +++ b/nipype/interfaces/mixins/tests/test_auto_ReportCapableInterface.py @@ -4,12 +4,7 @@ def test_ReportCapableInterface_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = ReportCapableInterface.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/mne/tests/test_auto_WatershedBEM.py b/nipype/interfaces/mne/tests/test_auto_WatershedBEM.py index 58e94d0850..4ced8de75a 100644 --- a/nipype/interfaces/mne/tests/test_auto_WatershedBEM.py +++ b/nipype/interfaces/mne/tests/test_auto_WatershedBEM.py @@ -11,11 +11,6 @@ def test_WatershedBEM_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), overwrite=dict( argstr='--overwrite', usedefault=True, @@ -28,10 +23,6 @@ def test_WatershedBEM_inputs(): mandatory=True, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), volume=dict( argstr='--volume %s', usedefault=True, diff --git a/nipype/interfaces/mrtrix/tests/test_auto_ConstrainedSphericalDeconvolution.py b/nipype/interfaces/mrtrix/tests/test_auto_ConstrainedSphericalDeconvolution.py index af1a566aad..78a275f6a7 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_ConstrainedSphericalDeconvolution.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_ConstrainedSphericalDeconvolution.py @@ -23,11 +23,6 @@ def test_ConstrainedSphericalDeconvolution_inputs(): argstr='-filter %s', position=-2, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -54,10 +49,6 @@ def test_ConstrainedSphericalDeconvolution_inputs(): mandatory=True, position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold_value=dict(argstr='-threshold %s', ), ) inputs = ConstrainedSphericalDeconvolution.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_DWI2SphericalHarmonicsImage.py b/nipype/interfaces/mrtrix/tests/test_auto_DWI2SphericalHarmonicsImage.py index 8a500023e9..dc95cff525 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_DWI2SphericalHarmonicsImage.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_DWI2SphericalHarmonicsImage.py @@ -15,11 +15,6 @@ def test_DWI2SphericalHarmonicsImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -35,10 +30,6 @@ def test_DWI2SphericalHarmonicsImage_inputs(): genfile=True, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DWI2SphericalHarmonicsImage.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_DWI2Tensor.py b/nipype/interfaces/mrtrix/tests/test_auto_DWI2Tensor.py index e0309f549c..86975950bf 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_DWI2Tensor.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_DWI2Tensor.py @@ -18,11 +18,6 @@ def test_DWI2Tensor_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ignore_slice_by_volume=dict( argstr='-ignoreslices %s', position=2, @@ -49,10 +44,6 @@ def test_DWI2Tensor_inputs(): argstr='-quiet', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DWI2Tensor.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_DiffusionTensorStreamlineTrack.py b/nipype/interfaces/mrtrix/tests/test_auto_DiffusionTensorStreamlineTrack.py index 7408e3f3dc..2c6417fe3a 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_DiffusionTensorStreamlineTrack.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_DiffusionTensorStreamlineTrack.py @@ -32,11 +32,6 @@ def test_DiffusionTensorStreamlineTrack_inputs(): mandatory=True, position=-2, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -114,10 +109,6 @@ def test_DiffusionTensorStreamlineTrack_inputs(): units='mm', ), stop=dict(argstr='-stop', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), unidirectional=dict(argstr='-unidirectional', ), ) inputs = DiffusionTensorStreamlineTrack.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Directions2Amplitude.py b/nipype/interfaces/mrtrix/tests/test_auto_Directions2Amplitude.py index a0377a3c5e..b5474bd18c 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Directions2Amplitude.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Directions2Amplitude.py @@ -12,11 +12,6 @@ def test_Directions2Amplitude_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -37,10 +32,6 @@ def test_Directions2Amplitude_inputs(): ), peaks_image=dict(argstr='-peaks %s', ), quiet_display=dict(argstr='-quiet', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Directions2Amplitude.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Erode.py b/nipype/interfaces/mrtrix/tests/test_auto_Erode.py index 10f05eca1e..6215593ab0 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Erode.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Erode.py @@ -18,11 +18,6 @@ def test_Erode_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -38,10 +33,6 @@ def test_Erode_inputs(): argstr='-quiet', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Erode.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_EstimateResponseForSH.py b/nipype/interfaces/mrtrix/tests/test_auto_EstimateResponseForSH.py index f3d31ec1f8..983433104e 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_EstimateResponseForSH.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_EstimateResponseForSH.py @@ -16,11 +16,6 @@ def test_EstimateResponseForSH_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -39,10 +34,6 @@ def test_EstimateResponseForSH_inputs(): position=-1, ), quiet=dict(argstr='-quiet', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = EstimateResponseForSH.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_FilterTracks.py b/nipype/interfaces/mrtrix/tests/test_auto_FilterTracks.py index b34d8372ba..6e0e670d06 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_FilterTracks.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_FilterTracks.py @@ -25,11 +25,6 @@ def test_FilterTracks_inputs(): units='mm', xor=['exclude_file', 'exclude_spec'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -63,10 +58,6 @@ def test_FilterTracks_inputs(): argstr='-quiet', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FilterTracks.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_FindShPeaks.py b/nipype/interfaces/mrtrix/tests/test_auto_FindShPeaks.py index a6c570c39c..5d9f51739c 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_FindShPeaks.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_FindShPeaks.py @@ -17,11 +17,6 @@ def test_FindShPeaks_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -43,10 +38,6 @@ def test_FindShPeaks_inputs(): peak_threshold=dict(argstr='-threshold %s', ), peaks_image=dict(argstr='-peaks %s', ), quiet_display=dict(argstr='-quiet', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FindShPeaks.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_GenerateDirections.py b/nipype/interfaces/mrtrix/tests/test_auto_GenerateDirections.py index a2c2e2ee7c..2cfd89bb6f 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_GenerateDirections.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_GenerateDirections.py @@ -12,11 +12,6 @@ def test_GenerateDirections_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), niter=dict(argstr='-niter %s', ), num_dirs=dict( argstr='%s', @@ -32,10 +27,6 @@ def test_GenerateDirections_inputs(): ), power=dict(argstr='-power %s', ), quiet_display=dict(argstr='-quiet', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = GenerateDirections.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_GenerateWhiteMatterMask.py b/nipype/interfaces/mrtrix/tests/test_auto_GenerateWhiteMatterMask.py index 88ba72dcae..6a0305f9e2 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_GenerateWhiteMatterMask.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_GenerateWhiteMatterMask.py @@ -20,11 +20,6 @@ def test_GenerateWhiteMatterMask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -36,10 +31,6 @@ def test_GenerateWhiteMatterMask_inputs(): genfile=True, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = GenerateWhiteMatterMask.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MRConvert.py b/nipype/interfaces/mrtrix/tests/test_auto_MRConvert.py index df681c17eb..5aef0bfd13 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MRConvert.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MRConvert.py @@ -23,11 +23,6 @@ def test_MRConvert_inputs(): position=2, sep=',', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -64,10 +59,6 @@ def test_MRConvert_inputs(): position=3, units='mm', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_dims=dict( argstr='-vox %s', position=3, diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MRMultiply.py b/nipype/interfaces/mrtrix/tests/test_auto_MRMultiply.py index ddb7a30f8d..a5a864289a 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MRMultiply.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MRMultiply.py @@ -14,11 +14,6 @@ def test_MRMultiply_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', mandatory=True, @@ -33,10 +28,6 @@ def test_MRMultiply_inputs(): argstr='-quiet', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MRMultiply.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MRTransform.py b/nipype/interfaces/mrtrix/tests/test_auto_MRTransform.py index a82dfaa858..d6a3db0a1d 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MRTransform.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MRTransform.py @@ -18,11 +18,6 @@ def test_MRTransform_inputs(): argstr='-flipx', position=1, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', mandatory=True, @@ -53,10 +48,6 @@ def test_MRTransform_inputs(): argstr='-template %s', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformation_file=dict( argstr='-transform %s', position=1, diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MRTrixInfo.py b/nipype/interfaces/mrtrix/tests/test_auto_MRTrixInfo.py index 18bc2c66c4..0022de4d7a 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MRTrixInfo.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MRTrixInfo.py @@ -10,20 +10,11 @@ def test_MRTrixInfo_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MRTrixInfo.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MRTrixViewer.py b/nipype/interfaces/mrtrix/tests/test_auto_MRTrixViewer.py index 5b814209ac..117258ea17 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MRTrixViewer.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MRTrixViewer.py @@ -14,11 +14,6 @@ def test_MRTrixViewer_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( argstr='%s', mandatory=True, @@ -28,10 +23,6 @@ def test_MRTrixViewer_inputs(): argstr='-quiet', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MRTrixViewer.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_MedianFilter3D.py b/nipype/interfaces/mrtrix/tests/test_auto_MedianFilter3D.py index 147be28bc8..0e7daabcaa 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_MedianFilter3D.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_MedianFilter3D.py @@ -14,11 +14,6 @@ def test_MedianFilter3D_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -33,10 +28,6 @@ def test_MedianFilter3D_inputs(): argstr='-quiet', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MedianFilter3D.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_ProbabilisticSphericallyDeconvolutedStreamlineTrack.py b/nipype/interfaces/mrtrix/tests/test_auto_ProbabilisticSphericallyDeconvolutedStreamlineTrack.py index ed30b6abb7..6d75b1b9a2 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_ProbabilisticSphericallyDeconvolutedStreamlineTrack.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_ProbabilisticSphericallyDeconvolutedStreamlineTrack.py @@ -27,11 +27,6 @@ def test_ProbabilisticSphericallyDeconvolutedStreamlineTrack_inputs(): units='mm', xor=['exclude_file', 'exclude_spec'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -110,10 +105,6 @@ def test_ProbabilisticSphericallyDeconvolutedStreamlineTrack_inputs(): units='mm', ), stop=dict(argstr='-stop', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), unidirectional=dict(argstr='-unidirectional', ), ) inputs = ProbabilisticSphericallyDeconvolutedStreamlineTrack.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_SphericallyDeconvolutedStreamlineTrack.py b/nipype/interfaces/mrtrix/tests/test_auto_SphericallyDeconvolutedStreamlineTrack.py index e96f4ec20c..9bed95276d 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_SphericallyDeconvolutedStreamlineTrack.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_SphericallyDeconvolutedStreamlineTrack.py @@ -27,11 +27,6 @@ def test_SphericallyDeconvolutedStreamlineTrack_inputs(): units='mm', xor=['exclude_file', 'exclude_spec'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -109,10 +104,6 @@ def test_SphericallyDeconvolutedStreamlineTrack_inputs(): units='mm', ), stop=dict(argstr='-stop', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), unidirectional=dict(argstr='-unidirectional', ), ) inputs = SphericallyDeconvolutedStreamlineTrack.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_StreamlineTrack.py b/nipype/interfaces/mrtrix/tests/test_auto_StreamlineTrack.py index 6626bec4c0..c898a60eb3 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_StreamlineTrack.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_StreamlineTrack.py @@ -27,11 +27,6 @@ def test_StreamlineTrack_inputs(): units='mm', xor=['exclude_file', 'exclude_spec'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -109,10 +104,6 @@ def test_StreamlineTrack_inputs(): units='mm', ), stop=dict(argstr='-stop', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), unidirectional=dict(argstr='-unidirectional', ), ) inputs = StreamlineTrack.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2ApparentDiffusion.py b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2ApparentDiffusion.py index 95836bb573..e9546d7e90 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2ApparentDiffusion.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2ApparentDiffusion.py @@ -14,11 +14,6 @@ def test_Tensor2ApparentDiffusion_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -33,10 +28,6 @@ def test_Tensor2ApparentDiffusion_inputs(): argstr='-quiet', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Tensor2ApparentDiffusion.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2FractionalAnisotropy.py b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2FractionalAnisotropy.py index 7388988db4..d16a907f62 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2FractionalAnisotropy.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2FractionalAnisotropy.py @@ -14,11 +14,6 @@ def test_Tensor2FractionalAnisotropy_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -33,10 +28,6 @@ def test_Tensor2FractionalAnisotropy_inputs(): argstr='-quiet', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Tensor2FractionalAnisotropy.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2Vector.py b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2Vector.py index e41ca71472..c07d0a8db4 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Tensor2Vector.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Tensor2Vector.py @@ -14,11 +14,6 @@ def test_Tensor2Vector_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -33,10 +28,6 @@ def test_Tensor2Vector_inputs(): argstr='-quiet', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Tensor2Vector.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Threshold.py b/nipype/interfaces/mrtrix/tests/test_auto_Threshold.py index fa7841e968..39fbf14d2c 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Threshold.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Threshold.py @@ -15,11 +15,6 @@ def test_Threshold_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -43,10 +38,6 @@ def test_Threshold_inputs(): argstr='-nan', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Threshold.input_spec() diff --git a/nipype/interfaces/mrtrix/tests/test_auto_Tracks2Prob.py b/nipype/interfaces/mrtrix/tests/test_auto_Tracks2Prob.py index 910c76cfad..f984203ab1 100644 --- a/nipype/interfaces/mrtrix/tests/test_auto_Tracks2Prob.py +++ b/nipype/interfaces/mrtrix/tests/test_auto_Tracks2Prob.py @@ -18,11 +18,6 @@ def test_Tracks2Prob_inputs(): argstr='-fraction', position=3, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -46,10 +41,6 @@ def test_Tracks2Prob_inputs(): argstr='-template %s', position=1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel_dims=dict( argstr='-vox %s', position=2, diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_ACTPrepareFSL.py b/nipype/interfaces/mrtrix3/tests/test_auto_ACTPrepareFSL.py index 12b8bd9c53..abb3ba6831 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_ACTPrepareFSL.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_ACTPrepareFSL.py @@ -10,11 +10,6 @@ def test_ACTPrepareFSL_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -26,10 +21,6 @@ def test_ACTPrepareFSL_inputs(): position=-1, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ACTPrepareFSL.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_BrainMask.py b/nipype/interfaces/mrtrix3/tests/test_auto_BrainMask.py index 58c1990ec5..c318be0bfd 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_BrainMask.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_BrainMask.py @@ -13,11 +13,6 @@ def test_BrainMask_inputs(): ), grad_file=dict(argstr='-grad %s', ), grad_fsl=dict(argstr='-fslgrad %s %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(), in_bvec=dict(argstr='-fslgrad %s %s', ), in_file=dict( @@ -35,10 +30,6 @@ def test_BrainMask_inputs(): position=-1, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BrainMask.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_BuildConnectome.py b/nipype/interfaces/mrtrix3/tests/test_auto_BuildConnectome.py index b47ec4d3b4..95e5797d06 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_BuildConnectome.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_BuildConnectome.py @@ -10,11 +10,6 @@ def test_BuildConnectome_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -41,10 +36,6 @@ def test_BuildConnectome_inputs(): search_forward=dict(argstr='-assignment_forward_search %f', ), search_radius=dict(argstr='-assignment_radial_search %f', ), search_reverse=dict(argstr='-assignment_reverse_search %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), vox_lookup=dict(argstr='-assignment_voxel_lookup', ), zero_diagonal=dict(argstr='-zero_diagonal', ), ) diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_ComputeTDI.py b/nipype/interfaces/mrtrix3/tests/test_auto_ComputeTDI.py index eec8bcc926..38369e8fe5 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_ComputeTDI.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_ComputeTDI.py @@ -15,11 +15,6 @@ def test_ComputeTDI_inputs(): usedefault=True, ), fwhm_tck=dict(argstr='-fwhm_tck %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -42,10 +37,6 @@ def test_ComputeTDI_inputs(): stat_tck=dict(argstr='-stat_tck %s', ), stat_vox=dict(argstr='-stat_vox %s', ), tck_weights=dict(argstr='-tck_weights_in %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upsample=dict(argstr='-upsample %d', ), use_dec=dict(argstr='-dec', ), vox_size=dict( diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_DWIDenoise.py b/nipype/interfaces/mrtrix3/tests/test_auto_DWIDenoise.py index 8494151a3d..769ccb34a9 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_DWIDenoise.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_DWIDenoise.py @@ -14,11 +14,6 @@ def test_DWIDenoise_inputs(): extent=dict(argstr='-extent %d,%d,%d', ), grad_file=dict(argstr='-grad %s', ), grad_fsl=dict(argstr='-fslgrad %s %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(), in_bvec=dict(argstr='-fslgrad %s %s', ), in_file=dict( @@ -42,10 +37,6 @@ def test_DWIDenoise_inputs(): name_template='%s_denoised', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DWIDenoise.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_DWIExtract.py b/nipype/interfaces/mrtrix3/tests/test_auto_DWIExtract.py index 31849f9bc5..d32d6de4ea 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_DWIExtract.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_DWIExtract.py @@ -14,11 +14,6 @@ def test_DWIExtract_inputs(): ), grad_file=dict(argstr='-grad %s', ), grad_fsl=dict(argstr='-fslgrad %s %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(), in_bvec=dict(argstr='-fslgrad %s %s', ), in_file=dict( @@ -41,10 +36,6 @@ def test_DWIExtract_inputs(): sep=',', ), singleshell=dict(argstr='-singleshell', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DWIExtract.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_EstimateFOD.py b/nipype/interfaces/mrtrix3/tests/test_auto_EstimateFOD.py index 69cf79e2d4..a5c152e928 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_EstimateFOD.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_EstimateFOD.py @@ -36,11 +36,6 @@ def test_EstimateFOD_inputs(): ), grad_file=dict(argstr='-grad %s', ), grad_fsl=dict(argstr='-fslgrad %s %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(), in_bvec=dict(argstr='-fslgrad %s %s', ), in_dirs=dict(argstr='-directions %s', ), @@ -62,10 +57,6 @@ def test_EstimateFOD_inputs(): argstr='-shell %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), wm_odf=dict( argstr='%s', mandatory=True, diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_FitTensor.py b/nipype/interfaces/mrtrix3/tests/test_auto_FitTensor.py index 3afdf8e8b9..40b7baa931 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_FitTensor.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_FitTensor.py @@ -13,11 +13,6 @@ def test_FitTensor_inputs(): ), grad_file=dict(argstr='-grad %s', ), grad_fsl=dict(argstr='-fslgrad %s %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(), in_bvec=dict(argstr='-fslgrad %s %s', ), in_file=dict( @@ -41,10 +36,6 @@ def test_FitTensor_inputs(): argstr='-regularisation %f', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FitTensor.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_Generate5tt.py b/nipype/interfaces/mrtrix3/tests/test_auto_Generate5tt.py index 8c483ca120..dcfbe1fc6f 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_Generate5tt.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_Generate5tt.py @@ -18,11 +18,6 @@ def test_Generate5tt_inputs(): ), grad_file=dict(argstr='-grad %s', ), grad_fsl=dict(argstr='-fslgrad %s %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(), in_bvec=dict(argstr='-fslgrad %s %s', ), in_file=dict( @@ -39,10 +34,6 @@ def test_Generate5tt_inputs(): mandatory=True, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Generate5tt.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_LabelConfig.py b/nipype/interfaces/mrtrix3/tests/test_auto_LabelConfig.py index 6c37a1f9d8..2de0e6c115 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_LabelConfig.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_LabelConfig.py @@ -10,11 +10,6 @@ def test_LabelConfig_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_config=dict( argstr='%s', position=-2, @@ -39,10 +34,6 @@ def test_LabelConfig_inputs(): usedefault=True, ), spine=dict(argstr='-spine %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = LabelConfig.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_LabelConvert.py b/nipype/interfaces/mrtrix3/tests/test_auto_LabelConvert.py index 693dd0ea93..1e93ae82d8 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_LabelConvert.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_LabelConvert.py @@ -10,11 +10,6 @@ def test_LabelConvert_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_config=dict( argstr='%s', position=-2, @@ -40,10 +35,6 @@ def test_LabelConvert_inputs(): usedefault=True, ), spine=dict(argstr='-spine %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = LabelConvert.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_MRConvert.py b/nipype/interfaces/mrtrix3/tests/test_auto_MRConvert.py index e05a958c0d..ece24e1d47 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_MRConvert.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_MRConvert.py @@ -21,11 +21,6 @@ def test_MRConvert_inputs(): ), grad_file=dict(argstr='-grad %s', ), grad_fsl=dict(argstr='-fslgrad %s %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(), in_bvec=dict(argstr='-fslgrad %s %s', ), in_file=dict( @@ -47,10 +42,6 @@ def test_MRConvert_inputs(): argstr='-scaling %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), vox=dict( argstr='-vox %s', sep=',', diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_MRMath.py b/nipype/interfaces/mrtrix3/tests/test_auto_MRMath.py index 1cc11608f9..eec06b6276 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_MRMath.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_MRMath.py @@ -14,11 +14,6 @@ def test_MRMath_inputs(): ), grad_file=dict(argstr='-grad %s', ), grad_fsl=dict(argstr='-fslgrad %s %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(), in_bvec=dict(argstr='-fslgrad %s %s', ), in_file=dict( @@ -40,10 +35,6 @@ def test_MRMath_inputs(): mandatory=True, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MRMath.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_MRTrix3Base.py b/nipype/interfaces/mrtrix3/tests/test_auto_MRTrix3Base.py index 8e6021d82e..453baa053a 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_MRTrix3Base.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_MRTrix3Base.py @@ -10,15 +10,6 @@ def test_MRTrix3Base_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MRTrix3Base.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_Mesh2PVE.py b/nipype/interfaces/mrtrix3/tests/test_auto_Mesh2PVE.py index 2ca5bfe208..9aa29acbe8 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_Mesh2PVE.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_Mesh2PVE.py @@ -10,11 +10,6 @@ def test_Mesh2PVE_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -32,10 +27,6 @@ def test_Mesh2PVE_inputs(): mandatory=True, position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Mesh2PVE.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_ReplaceFSwithFIRST.py b/nipype/interfaces/mrtrix3/tests/test_auto_ReplaceFSwithFIRST.py index fc38059bed..502a0f7fb1 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_ReplaceFSwithFIRST.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_ReplaceFSwithFIRST.py @@ -10,11 +10,6 @@ def test_ReplaceFSwithFIRST_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_config=dict( argstr='%s', position=-2, @@ -35,10 +30,6 @@ def test_ReplaceFSwithFIRST_inputs(): position=-1, usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ReplaceFSwithFIRST.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_ResponseSD.py b/nipype/interfaces/mrtrix3/tests/test_auto_ResponseSD.py index 29dabc2047..027527ec85 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_ResponseSD.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_ResponseSD.py @@ -26,11 +26,6 @@ def test_ResponseSD_inputs(): ), grad_file=dict(argstr='-grad %s', ), grad_fsl=dict(argstr='-fslgrad %s %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(), in_bvec=dict(argstr='-fslgrad %s %s', ), in_file=dict( @@ -52,10 +47,6 @@ def test_ResponseSD_inputs(): argstr='-nthreads %d', nohash=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), wm_file=dict( argstr='%s', position=-3, diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_TCK2VTK.py b/nipype/interfaces/mrtrix3/tests/test_auto_TCK2VTK.py index 606d311185..93a39484f8 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_TCK2VTK.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_TCK2VTK.py @@ -10,11 +10,6 @@ def test_TCK2VTK_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -30,10 +25,6 @@ def test_TCK2VTK_inputs(): usedefault=True, ), reference=dict(argstr='-image %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), voxel=dict(argstr='-image %s', ), ) inputs = TCK2VTK.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_TensorMetrics.py b/nipype/interfaces/mrtrix3/tests/test_auto_TensorMetrics.py index 5026270301..ae532c9910 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_TensorMetrics.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_TensorMetrics.py @@ -15,11 +15,6 @@ def test_TensorMetrics_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -31,10 +26,6 @@ def test_TensorMetrics_inputs(): out_eval=dict(argstr='-value %s', ), out_evec=dict(argstr='-vector %s', ), out_fa=dict(argstr='-fa %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TensorMetrics.input_spec() diff --git a/nipype/interfaces/mrtrix3/tests/test_auto_Tractography.py b/nipype/interfaces/mrtrix3/tests/test_auto_Tractography.py index 603a6a7a24..dff5c783ee 100644 --- a/nipype/interfaces/mrtrix3/tests/test_auto_Tractography.py +++ b/nipype/interfaces/mrtrix3/tests/test_auto_Tractography.py @@ -24,11 +24,6 @@ def test_Tractography_inputs(): ), grad_file=dict(argstr='-grad %s', ), grad_fsl=dict(argstr='-fslgrad %s %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_bval=dict(), in_bvec=dict(argstr='-fslgrad %s %s', ), in_file=dict( @@ -85,10 +80,6 @@ def test_Tractography_inputs(): sph_trait=dict(argstr='%f,%f,%f,%f', ), step_size=dict(argstr='-step %f', ), stop=dict(argstr='-stop', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), unidirectional=dict(argstr='-unidirectional', ), use_rk4=dict(argstr='-rk4', ), ) diff --git a/nipype/interfaces/niftyfit/tests/test_auto_DwiTool.py b/nipype/interfaces/niftyfit/tests/test_auto_DwiTool.py index 736a90bd91..20995e806e 100644 --- a/nipype/interfaces/niftyfit/tests/test_auto_DwiTool.py +++ b/nipype/interfaces/niftyfit/tests/test_auto_DwiTool.py @@ -62,11 +62,6 @@ def test_DwiTool_inputs(): name_source=['source_file'], name_template='%s_famap.nii.gz', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ivim_flag=dict( argstr='-ivim', position=6, @@ -134,10 +129,6 @@ def test_DwiTool_inputs(): name_template='%s_syn.nii.gz', requires=['bvec_file', 'b0_file'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), v1map_file=dict( argstr='-v1map %s', name_source=['source_file'], diff --git a/nipype/interfaces/niftyfit/tests/test_auto_FitAsl.py b/nipype/interfaces/niftyfit/tests/test_auto_FitAsl.py index 753aeab890..b2e1bef961 100644 --- a/nipype/interfaces/niftyfit/tests/test_auto_FitAsl.py +++ b/nipype/interfaces/niftyfit/tests/test_auto_FitAsl.py @@ -26,11 +26,6 @@ def test_FitAsl_inputs(): gm_plasma=dict(argstr='-gmL %f', ), gm_t1=dict(argstr='-gmT1 %f', ), gm_ttt=dict(argstr='-gmTTT %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ir_output=dict(argstr='-IRoutput %s', ), ir_volume=dict(argstr='-IRvolume %s', ), ldd=dict(argstr='-LDD %f', ), @@ -68,10 +63,6 @@ def test_FitAsl_inputs(): t1map=dict(argstr='-t1map %s', ), t_inv1=dict(argstr='-Tinv1 %f', ), t_inv2=dict(argstr='-Tinv2 %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), wm_plasma=dict(argstr='-wmL %f', ), wm_t1=dict(argstr='-wmT1 %f', ), wm_ttt=dict(argstr='-wmTTT %f', ), diff --git a/nipype/interfaces/niftyfit/tests/test_auto_FitDwi.py b/nipype/interfaces/niftyfit/tests/test_auto_FitDwi.py index 1412daa220..700d9a31c4 100644 --- a/nipype/interfaces/niftyfit/tests/test_auto_FitDwi.py +++ b/nipype/interfaces/niftyfit/tests/test_auto_FitDwi.py @@ -63,11 +63,6 @@ def test_FitDwi_inputs(): argstr='-gn', xor=['wls_flag'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ivim_flag=dict( argstr='-ivim', position=4, @@ -179,10 +174,6 @@ def test_FitDwi_inputs(): name_template='%s_tenmap.nii.gz', requires=['dti_flag'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), v1map_file=dict( argstr='-v1map %s', name_source=['source_file'], diff --git a/nipype/interfaces/niftyfit/tests/test_auto_FitQt1.py b/nipype/interfaces/niftyfit/tests/test_auto_FitQt1.py index 55bf9390ef..0505ee514c 100644 --- a/nipype/interfaces/niftyfit/tests/test_auto_FitQt1.py +++ b/nipype/interfaces/niftyfit/tests/test_auto_FitQt1.py @@ -31,11 +31,6 @@ def test_FitQt1_inputs(): argstr='-gn', position=8, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ir_flag=dict( argstr='-IR', position=13, @@ -109,10 +104,6 @@ def test_FitQt1_inputs(): argstr='-TE %f', position=4, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tis=dict( argstr='-TIs %s', position=14, diff --git a/nipype/interfaces/niftyfit/tests/test_auto_NiftyFitCommand.py b/nipype/interfaces/niftyfit/tests/test_auto_NiftyFitCommand.py index 59af812d2b..6bfeb3c9d3 100644 --- a/nipype/interfaces/niftyfit/tests/test_auto_NiftyFitCommand.py +++ b/nipype/interfaces/niftyfit/tests/test_auto_NiftyFitCommand.py @@ -10,15 +10,6 @@ def test_NiftyFitCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = NiftyFitCommand.input_spec() diff --git a/nipype/interfaces/niftyreg/tests/test_auto_NiftyRegCommand.py b/nipype/interfaces/niftyreg/tests/test_auto_NiftyRegCommand.py index 95dce2c82e..89615b50d7 100644 --- a/nipype/interfaces/niftyreg/tests/test_auto_NiftyRegCommand.py +++ b/nipype/interfaces/niftyreg/tests/test_auto_NiftyRegCommand.py @@ -10,19 +10,10 @@ def test_NiftyRegCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), omp_core_val=dict( argstr='-omp %i', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = NiftyRegCommand.input_spec() diff --git a/nipype/interfaces/niftyreg/tests/test_auto_RegAladin.py b/nipype/interfaces/niftyreg/tests/test_auto_RegAladin.py index 0a55d07566..9507f53fa9 100644 --- a/nipype/interfaces/niftyreg/tests/test_auto_RegAladin.py +++ b/nipype/interfaces/niftyreg/tests/test_auto_RegAladin.py @@ -26,11 +26,6 @@ def test_RegAladin_inputs(): fmask_file=dict(argstr='-fmask %s', ), gpuid_val=dict(argstr='-gpuid %i', ), i_val=dict(argstr='-pi %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_aff_file=dict(argstr='-inaff %s', ), ln_val=dict(argstr='-ln %d', ), lp_val=dict(argstr='-lp %d', ), @@ -57,10 +52,6 @@ def test_RegAladin_inputs(): rmask_file=dict(argstr='-rmask %s', ), smoo_f_val=dict(argstr='-smooF %f', ), smoo_r_val=dict(argstr='-smooR %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), v_val=dict(argstr='-pv %d', ), verbosity_off_flag=dict(argstr='-voff', ), ) diff --git a/nipype/interfaces/niftyreg/tests/test_auto_RegAverage.py b/nipype/interfaces/niftyreg/tests/test_auto_RegAverage.py index d1feaa998d..2510a46eb8 100644 --- a/nipype/interfaces/niftyreg/tests/test_auto_RegAverage.py +++ b/nipype/interfaces/niftyreg/tests/test_auto_RegAverage.py @@ -64,11 +64,6 @@ def test_RegAverage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), omp_core_val=dict( argstr='-omp %i', usedefault=True, @@ -78,10 +73,6 @@ def test_RegAverage_inputs(): genfile=True, position=0, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warp_files=dict( argstr='%s', position=-1, diff --git a/nipype/interfaces/niftyreg/tests/test_auto_RegF3D.py b/nipype/interfaces/niftyreg/tests/test_auto_RegF3D.py index 9e152e1fbe..e9bdab82c0 100644 --- a/nipype/interfaces/niftyreg/tests/test_auto_RegF3D.py +++ b/nipype/interfaces/niftyreg/tests/test_auto_RegF3D.py @@ -30,11 +30,6 @@ def test_RegF3D_inputs(): fmask_file=dict(argstr='-fmask %s', ), fupth2_thr_val=dict(argstr='-fUpTh %d %f', ), fupth_thr_val=dict(argstr='--fUpTh %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), incpp_file=dict(argstr='-incpp %s', ), jl_val=dict(argstr='-jl %f', ), kld2_flag=dict(argstr='-kld %d', ), @@ -81,10 +76,6 @@ def test_RegF3D_inputs(): sx_val=dict(argstr='-sx %f', ), sy_val=dict(argstr='-sy %f', ), sz_val=dict(argstr='-sz %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), vel_flag=dict(argstr='-vel', ), verbosity_off_flag=dict(argstr='-voff', ), ) diff --git a/nipype/interfaces/niftyreg/tests/test_auto_RegJacobian.py b/nipype/interfaces/niftyreg/tests/test_auto_RegJacobian.py index 036b0bb3e8..63f917c683 100644 --- a/nipype/interfaces/niftyreg/tests/test_auto_RegJacobian.py +++ b/nipype/interfaces/niftyreg/tests/test_auto_RegJacobian.py @@ -10,11 +10,6 @@ def test_RegJacobian_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), omp_core_val=dict( argstr='-omp %i', usedefault=True, @@ -26,10 +21,6 @@ def test_RegJacobian_inputs(): position=-1, ), ref_file=dict(argstr='-ref %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trans_file=dict( argstr='-trans %s', mandatory=True, diff --git a/nipype/interfaces/niftyreg/tests/test_auto_RegMeasure.py b/nipype/interfaces/niftyreg/tests/test_auto_RegMeasure.py index b2e2cb55ff..3321d87afc 100644 --- a/nipype/interfaces/niftyreg/tests/test_auto_RegMeasure.py +++ b/nipype/interfaces/niftyreg/tests/test_auto_RegMeasure.py @@ -14,11 +14,6 @@ def test_RegMeasure_inputs(): argstr='-flo %s', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), measure_type=dict( argstr='-%s', mandatory=True, @@ -36,10 +31,6 @@ def test_RegMeasure_inputs(): argstr='-ref %s', mandatory=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = RegMeasure.input_spec() diff --git a/nipype/interfaces/niftyreg/tests/test_auto_RegResample.py b/nipype/interfaces/niftyreg/tests/test_auto_RegResample.py index 56855c7494..06b2b48401 100644 --- a/nipype/interfaces/niftyreg/tests/test_auto_RegResample.py +++ b/nipype/interfaces/niftyreg/tests/test_auto_RegResample.py @@ -14,11 +14,6 @@ def test_RegResample_inputs(): argstr='-flo %s', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inter_val=dict(argstr='-inter %d', ), omp_core_val=dict( argstr='-omp %i', @@ -38,10 +33,6 @@ def test_RegResample_inputs(): mandatory=True, ), tensor_flag=dict(argstr='-tensor ', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trans_file=dict(argstr='-trans %s', ), type=dict( argstr='-%s', diff --git a/nipype/interfaces/niftyreg/tests/test_auto_RegTools.py b/nipype/interfaces/niftyreg/tests/test_auto_RegTools.py index f0f66083c7..5deb4206e6 100644 --- a/nipype/interfaces/niftyreg/tests/test_auto_RegTools.py +++ b/nipype/interfaces/niftyreg/tests/test_auto_RegTools.py @@ -15,11 +15,6 @@ def test_RegTools_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -42,10 +37,6 @@ def test_RegTools_inputs(): smo_g_val=dict(argstr='-smoG %f %f %f', ), smo_s_val=dict(argstr='-smoS %f %f %f', ), sub_val=dict(argstr='-sub %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thr_val=dict(argstr='-thr %f', ), ) inputs = RegTools.input_spec() diff --git a/nipype/interfaces/niftyreg/tests/test_auto_RegTransform.py b/nipype/interfaces/niftyreg/tests/test_auto_RegTransform.py index 24222a7d7d..57c1b0ad86 100644 --- a/nipype/interfaces/niftyreg/tests/test_auto_RegTransform.py +++ b/nipype/interfaces/niftyreg/tests/test_auto_RegTransform.py @@ -78,11 +78,6 @@ def test_RegTransform_inputs(): 'make_aff_input', 'aff_2_rig_input', 'flirt_2_nr_input' ], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inv_aff_input=dict( argstr='-invAff %s', position=-2, @@ -128,10 +123,6 @@ def test_RegTransform_inputs(): position=1, requires=['ref1_file'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upd_s_form_input=dict( argstr='-updSform %s', position=-3, diff --git a/nipype/interfaces/niftyseg/tests/test_auto_BinaryMaths.py b/nipype/interfaces/niftyseg/tests/test_auto_BinaryMaths.py index 6a13dae3ac..cc7bc896c6 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_BinaryMaths.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_BinaryMaths.py @@ -10,11 +10,6 @@ def test_BinaryMaths_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -53,10 +48,6 @@ def test_BinaryMaths_inputs(): argstr='-odt %s', position=-3, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BinaryMaths.input_spec() diff --git a/nipype/interfaces/niftyseg/tests/test_auto_BinaryMathsInteger.py b/nipype/interfaces/niftyseg/tests/test_auto_BinaryMathsInteger.py index 8e22535d2e..464ed6f6c4 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_BinaryMathsInteger.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_BinaryMathsInteger.py @@ -10,11 +10,6 @@ def test_BinaryMathsInteger_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -40,10 +35,6 @@ def test_BinaryMathsInteger_inputs(): argstr='-odt %s', position=-3, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BinaryMathsInteger.input_spec() diff --git a/nipype/interfaces/niftyseg/tests/test_auto_BinaryStats.py b/nipype/interfaces/niftyseg/tests/test_auto_BinaryStats.py index e5db899662..0771d72f5c 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_BinaryStats.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_BinaryStats.py @@ -10,11 +10,6 @@ def test_BinaryStats_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -45,10 +40,6 @@ def test_BinaryStats_inputs(): mandatory=True, position=4, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BinaryStats.input_spec() diff --git a/nipype/interfaces/niftyseg/tests/test_auto_CalcTopNCC.py b/nipype/interfaces/niftyseg/tests/test_auto_CalcTopNCC.py index c2a06f89b4..dceea837c0 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_CalcTopNCC.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_CalcTopNCC.py @@ -10,11 +10,6 @@ def test_CalcTopNCC_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-target %s', mandatory=True, @@ -31,10 +26,6 @@ def test_CalcTopNCC_inputs(): mandatory=True, position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), top_templates=dict( argstr='-n %s', mandatory=True, diff --git a/nipype/interfaces/niftyseg/tests/test_auto_EM.py b/nipype/interfaces/niftyseg/tests/test_auto_EM.py index 4bd851fffb..fc270ed22f 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_EM.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_EM.py @@ -18,11 +18,6 @@ def test_EM_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -71,10 +66,6 @@ def test_EM_inputs(): ), reg_val=dict(argstr='-reg %s', ), relax_priors=dict(argstr='-rf %s %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = EM.input_spec() diff --git a/nipype/interfaces/niftyseg/tests/test_auto_FillLesions.py b/nipype/interfaces/niftyseg/tests/test_auto_FillLesions.py index 3928040987..7cbfe58c6c 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_FillLesions.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_FillLesions.py @@ -13,11 +13,6 @@ def test_FillLesions_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_dilation=dict(argstr='-dil %d', ), in_file=dict( argstr='-i %s', @@ -41,10 +36,6 @@ def test_FillLesions_inputs(): search=dict(argstr='-search %f', ), size=dict(argstr='-size %d', ), smooth=dict(argstr='-smo %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), use_2d=dict(argstr='-2D', ), verbose=dict(argstr='-v', ), ) diff --git a/nipype/interfaces/niftyseg/tests/test_auto_LabelFusion.py b/nipype/interfaces/niftyseg/tests/test_auto_LabelFusion.py index 29741f98f1..eea345e1df 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_LabelFusion.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_LabelFusion.py @@ -18,11 +18,6 @@ def test_LabelFusion_inputs(): usedefault=True, ), file_to_seg=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -48,10 +43,6 @@ def test_LabelFusion_inputs(): ), template_file=dict(), template_num=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), unc=dict(argstr='-unc', ), unc_thresh=dict(argstr='-uncthres %f', ), verbose=dict(argstr='-v %s', ), diff --git a/nipype/interfaces/niftyseg/tests/test_auto_MathsCommand.py b/nipype/interfaces/niftyseg/tests/test_auto_MathsCommand.py index 537c75a9dd..247dc9773e 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_MathsCommand.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_MathsCommand.py @@ -10,11 +10,6 @@ def test_MathsCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -30,10 +25,6 @@ def test_MathsCommand_inputs(): argstr='-odt %s', position=-3, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MathsCommand.input_spec() diff --git a/nipype/interfaces/niftyseg/tests/test_auto_Merge.py b/nipype/interfaces/niftyseg/tests/test_auto_Merge.py index f97d9beacf..c53e4edf40 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_Merge.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_Merge.py @@ -11,11 +11,6 @@ def test_Merge_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -36,10 +31,6 @@ def test_Merge_inputs(): argstr='-odt %s', position=-3, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Merge.input_spec() diff --git a/nipype/interfaces/niftyseg/tests/test_auto_NiftySegCommand.py b/nipype/interfaces/niftyseg/tests/test_auto_NiftySegCommand.py index 0847ec5feb..d840a40b2a 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_NiftySegCommand.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_NiftySegCommand.py @@ -10,15 +10,6 @@ def test_NiftySegCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = NiftySegCommand.input_spec() diff --git a/nipype/interfaces/niftyseg/tests/test_auto_PatchMatch.py b/nipype/interfaces/niftyseg/tests/test_auto_PatchMatch.py index 718eba4e78..bfeded6eef 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_PatchMatch.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_PatchMatch.py @@ -16,11 +16,6 @@ def test_PatchMatch_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -41,10 +36,6 @@ def test_PatchMatch_inputs(): ), patch_size=dict(argstr='-size %i', ), pm_num=dict(argstr='-pm %i', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = PatchMatch.input_spec() diff --git a/nipype/interfaces/niftyseg/tests/test_auto_StatsCommand.py b/nipype/interfaces/niftyseg/tests/test_auto_StatsCommand.py index 082c629f03..e845e18952 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_StatsCommand.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_StatsCommand.py @@ -10,11 +10,6 @@ def test_StatsCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -28,10 +23,6 @@ def test_StatsCommand_inputs(): argstr='-m %s', position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = StatsCommand.input_spec() diff --git a/nipype/interfaces/niftyseg/tests/test_auto_TupleMaths.py b/nipype/interfaces/niftyseg/tests/test_auto_TupleMaths.py index a0cd9d4809..7241264eee 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_TupleMaths.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_TupleMaths.py @@ -10,11 +10,6 @@ def test_TupleMaths_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -59,10 +54,6 @@ def test_TupleMaths_inputs(): argstr='-odt %s', position=-3, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TupleMaths.input_spec() diff --git a/nipype/interfaces/niftyseg/tests/test_auto_UnaryMaths.py b/nipype/interfaces/niftyseg/tests/test_auto_UnaryMaths.py index c6c1505c7a..9b1cd7d194 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_UnaryMaths.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_UnaryMaths.py @@ -10,11 +10,6 @@ def test_UnaryMaths_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -35,10 +30,6 @@ def test_UnaryMaths_inputs(): argstr='-odt %s', position=-3, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = UnaryMaths.input_spec() diff --git a/nipype/interfaces/niftyseg/tests/test_auto_UnaryStats.py b/nipype/interfaces/niftyseg/tests/test_auto_UnaryStats.py index ea8dee29d3..34edf1a190 100644 --- a/nipype/interfaces/niftyseg/tests/test_auto_UnaryStats.py +++ b/nipype/interfaces/niftyseg/tests/test_auto_UnaryStats.py @@ -10,11 +10,6 @@ def test_UnaryStats_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -33,10 +28,6 @@ def test_UnaryStats_inputs(): mandatory=True, position=4, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = UnaryStats.input_spec() diff --git a/nipype/interfaces/nipy/tests/test_auto_ComputeMask.py b/nipype/interfaces/nipy/tests/test_auto_ComputeMask.py index eca67782a4..f0f2453274 100644 --- a/nipype/interfaces/nipy/tests/test_auto_ComputeMask.py +++ b/nipype/interfaces/nipy/tests/test_auto_ComputeMask.py @@ -7,11 +7,6 @@ def test_ComputeMask_inputs(): input_map = dict( M=dict(), cc=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), m=dict(), mean_volume=dict(mandatory=True, ), reference_volume=dict(), diff --git a/nipype/interfaces/nipy/tests/test_auto_EstimateContrast.py b/nipype/interfaces/nipy/tests/test_auto_EstimateContrast.py index 7859137a7a..383d1cbea3 100644 --- a/nipype/interfaces/nipy/tests/test_auto_EstimateContrast.py +++ b/nipype/interfaces/nipy/tests/test_auto_EstimateContrast.py @@ -10,11 +10,6 @@ def test_EstimateContrast_inputs(): constants=dict(mandatory=True, ), contrasts=dict(mandatory=True, ), dof=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mask=dict(), nvbeta=dict(mandatory=True, ), reg_names=dict(mandatory=True, ), diff --git a/nipype/interfaces/nipy/tests/test_auto_FitGLM.py b/nipype/interfaces/nipy/tests/test_auto_FitGLM.py index 0a473e2187..4ac3aa720e 100644 --- a/nipype/interfaces/nipy/tests/test_auto_FitGLM.py +++ b/nipype/interfaces/nipy/tests/test_auto_FitGLM.py @@ -8,11 +8,6 @@ def test_FitGLM_inputs(): TR=dict(mandatory=True, ), drift_model=dict(usedefault=True, ), hrf_model=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mask=dict(), method=dict(usedefault=True, ), model=dict(usedefault=True, ), diff --git a/nipype/interfaces/nipy/tests/test_auto_NipyBaseInterface.py b/nipype/interfaces/nipy/tests/test_auto_NipyBaseInterface.py index 95b06f882b..ca91500995 100644 --- a/nipype/interfaces/nipy/tests/test_auto_NipyBaseInterface.py +++ b/nipype/interfaces/nipy/tests/test_auto_NipyBaseInterface.py @@ -4,12 +4,7 @@ def test_NipyBaseInterface_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = NipyBaseInterface.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/nipy/tests/test_auto_Similarity.py b/nipype/interfaces/nipy/tests/test_auto_Similarity.py index a3c9979715..fbdb6fffa6 100644 --- a/nipype/interfaces/nipy/tests/test_auto_Similarity.py +++ b/nipype/interfaces/nipy/tests/test_auto_Similarity.py @@ -5,11 +5,6 @@ def test_Similarity_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mask1=dict(), mask2=dict(), metric=dict(usedefault=True, ), diff --git a/nipype/interfaces/nipy/tests/test_auto_SpaceTimeRealigner.py b/nipype/interfaces/nipy/tests/test_auto_SpaceTimeRealigner.py index 2c7ee897a6..fca6664a49 100644 --- a/nipype/interfaces/nipy/tests/test_auto_SpaceTimeRealigner.py +++ b/nipype/interfaces/nipy/tests/test_auto_SpaceTimeRealigner.py @@ -5,11 +5,6 @@ def test_SpaceTimeRealigner_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( mandatory=True, min_ver='0.4.0.dev', diff --git a/nipype/interfaces/nipy/tests/test_auto_Trim.py b/nipype/interfaces/nipy/tests/test_auto_Trim.py index 0726c84c5c..6073c9082b 100644 --- a/nipype/interfaces/nipy/tests/test_auto_Trim.py +++ b/nipype/interfaces/nipy/tests/test_auto_Trim.py @@ -7,11 +7,6 @@ def test_Trim_inputs(): input_map = dict( begin_index=dict(usedefault=True, ), end_index=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(mandatory=True, ), out_file=dict(), suffix=dict(usedefault=True, ), diff --git a/nipype/interfaces/nitime/tests/test_auto_CoherenceAnalyzer.py b/nipype/interfaces/nitime/tests/test_auto_CoherenceAnalyzer.py index 37cc19d41b..4a641ebb50 100644 --- a/nipype/interfaces/nitime/tests/test_auto_CoherenceAnalyzer.py +++ b/nipype/interfaces/nitime/tests/test_auto_CoherenceAnalyzer.py @@ -9,11 +9,6 @@ def test_CoherenceAnalyzer_inputs(): TR=dict(), figure_type=dict(usedefault=True, ), frequency_range=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_TS=dict(), in_file=dict(requires=('TR', ), ), n_overlap=dict(usedefault=True, ), diff --git a/nipype/interfaces/nitime/tests/test_auto_NitimeBaseInterface.py b/nipype/interfaces/nitime/tests/test_auto_NitimeBaseInterface.py index bcade22ef5..bf827b81b2 100644 --- a/nipype/interfaces/nitime/tests/test_auto_NitimeBaseInterface.py +++ b/nipype/interfaces/nitime/tests/test_auto_NitimeBaseInterface.py @@ -4,12 +4,7 @@ def test_NitimeBaseInterface_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = NitimeBaseInterface.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSPosteriorToContinuousClass.py b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSPosteriorToContinuousClass.py index d52a1a7805..81a22bfe38 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSPosteriorToContinuousClass.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSPosteriorToContinuousClass.py @@ -10,11 +10,6 @@ def test_BRAINSPosteriorToContinuousClass_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputBasalGmVolume=dict(argstr='--inputBasalGmVolume %s', ), inputCrblGmVolume=dict(argstr='--inputCrblGmVolume %s', ), inputCrblWmVolume=dict(argstr='--inputCrblWmVolume %s', ), @@ -26,10 +21,6 @@ def test_BRAINSPosteriorToContinuousClass_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSPosteriorToContinuousClass.input_spec() diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairach.py b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairach.py index eee6069119..ac589ad6dc 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairach.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairach.py @@ -30,11 +30,6 @@ def test_BRAINSTalairach_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), outputBox=dict( argstr='--outputBox %s', @@ -44,10 +39,6 @@ def test_BRAINSTalairach_inputs(): argstr='--outputGrid %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSTalairach.input_spec() diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairachMask.py b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairachMask.py index b57994f6a7..5ada1576e7 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairachMask.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_BRAINSTalairachMask.py @@ -12,11 +12,6 @@ def test_BRAINSTalairachMask_inputs(): ), expand=dict(argstr='--expand ', ), hemisphereMode=dict(argstr='--hemisphereMode %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), outputVolume=dict( argstr='--outputVolume %s', @@ -24,10 +19,6 @@ def test_BRAINSTalairachMask_inputs(): ), talairachBox=dict(argstr='--talairachBox %s', ), talairachParameters=dict(argstr='--talairachParameters %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSTalairachMask.input_spec() diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_GenerateEdgeMapImage.py b/nipype/interfaces/semtools/brains/tests/test_auto_GenerateEdgeMapImage.py index 3e9358a4b2..eb4bdcffae 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_GenerateEdgeMapImage.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_GenerateEdgeMapImage.py @@ -10,11 +10,6 @@ def test_GenerateEdgeMapImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMRVolumes=dict(argstr='--inputMRVolumes %s...', ), inputMask=dict(argstr='--inputMask %s', ), lowerPercentileMatching=dict(argstr='--lowerPercentileMatching %f', ), @@ -29,10 +24,6 @@ def test_GenerateEdgeMapImage_inputs(): argstr='--outputMaximumGradientImage %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upperPercentileMatching=dict(argstr='--upperPercentileMatching %f', ), ) inputs = GenerateEdgeMapImage.input_spec() diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_GeneratePurePlugMask.py b/nipype/interfaces/semtools/brains/tests/test_auto_GeneratePurePlugMask.py index e3d4464e0e..ae16bc8fab 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_GeneratePurePlugMask.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_GeneratePurePlugMask.py @@ -10,11 +10,6 @@ def test_GeneratePurePlugMask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputImageModalities=dict(argstr='--inputImageModalities %s...', ), numberOfSubSamples=dict( argstr='--numberOfSubSamples %s', @@ -24,10 +19,6 @@ def test_GeneratePurePlugMask_inputs(): argstr='--outputMaskFile %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='--threshold %f', ), ) inputs = GeneratePurePlugMask.input_spec() diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_HistogramMatchingFilter.py b/nipype/interfaces/semtools/brains/tests/test_auto_HistogramMatchingFilter.py index 99b5617534..1377072149 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_HistogramMatchingFilter.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_HistogramMatchingFilter.py @@ -11,11 +11,6 @@ def test_HistogramMatchingFilter_inputs(): usedefault=True, ), histogramAlgorithm=dict(argstr='--histogramAlgorithm %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputBinaryVolume=dict(argstr='--inputBinaryVolume %s', ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfHistogramBins=dict(argstr='--numberOfHistogramBins %d', ), @@ -26,10 +21,6 @@ def test_HistogramMatchingFilter_inputs(): ), referenceBinaryVolume=dict(argstr='--referenceBinaryVolume %s', ), referenceVolume=dict(argstr='--referenceVolume %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='--verbose ', ), writeHistogram=dict(argstr='--writeHistogram %s', ), ) diff --git a/nipype/interfaces/semtools/brains/tests/test_auto_SimilarityIndex.py b/nipype/interfaces/semtools/brains/tests/test_auto_SimilarityIndex.py index 099454f73a..534488ad10 100644 --- a/nipype/interfaces/semtools/brains/tests/test_auto_SimilarityIndex.py +++ b/nipype/interfaces/semtools/brains/tests/test_auto_SimilarityIndex.py @@ -11,17 +11,8 @@ def test_SimilarityIndex_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputManualVolume=dict(argstr='--inputManualVolume %s', ), outputCSVFilename=dict(argstr='--outputCSVFilename %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thresholdInterval=dict(argstr='--thresholdInterval %f', ), ) inputs = SimilarityIndex.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_DWIConvert.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_DWIConvert.py index e3c03641e5..05593527fb 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_DWIConvert.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_DWIConvert.py @@ -18,11 +18,6 @@ def test_DWIConvert_inputs(): argstr='--gradientVectorFile %s', hash_files=False, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputBValues=dict(argstr='--inputBValues %s', ), inputBVectors=dict(argstr='--inputBVectors %s', ), inputDicomDirectory=dict(argstr='--inputDicomDirectory %s', ), @@ -44,10 +39,6 @@ def test_DWIConvert_inputs(): hash_files=False, ), smallGradientThreshold=dict(argstr='--smallGradientThreshold %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transposeInputBVectors=dict(argstr='--transposeInputBVectors ', ), useBMatrixGradientDirections=dict( argstr='--useBMatrixGradientDirections ', ), diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_compareTractInclusion.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_compareTractInclusion.py index 518cf63615..eb9d8c6184 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_compareTractInclusion.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_compareTractInclusion.py @@ -11,18 +11,9 @@ def test_compareTractInclusion_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), numberOfPoints=dict(argstr='--numberOfPoints %d', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), standardFiber=dict(argstr='--standardFiber %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), testFiber=dict(argstr='--testFiber %s', ), testForBijection=dict(argstr='--testForBijection ', ), testForFiberCardinality=dict(argstr='--testForFiberCardinality ', ), diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiaverage.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiaverage.py index f1922d282b..92c00853f4 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiaverage.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiaverage.py @@ -11,20 +11,11 @@ def test_dtiaverage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputs=dict(argstr='--inputs %s...', ), tensor_output=dict( argstr='--tensor_output %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='--verbose ', ), ) inputs = dtiaverage.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiestim.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiestim.py index 8b96cb8951..440fd4df07 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiestim.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiestim.py @@ -31,11 +31,6 @@ def test_dtiestim_inputs(): argstr='--idwi %s', hash_files=False, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), method=dict(argstr='--method %s', ), shiftNeg=dict(argstr='--shiftNeg ', ), shiftNegCoeff=dict(argstr='--shiftNegCoeff %f', ), @@ -45,10 +40,6 @@ def test_dtiestim_inputs(): argstr='--tensor_output %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='--threshold %d', ), verbose=dict(argstr='--verbose ', ), weight_iterations=dict(argstr='--weight_iterations %d', ), diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiprocess.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiprocess.py index b66a93f723..3148d1edb5 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiprocess.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_dtiprocess.py @@ -45,11 +45,6 @@ def test_dtiprocess_inputs(): hash_files=False, ), hField=dict(argstr='--hField ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), interpolation=dict(argstr='--interpolation %s', ), lambda1_output=dict( argstr='--lambda1_output %s', @@ -88,10 +83,6 @@ def test_dtiprocess_inputs(): ), scalar_float=dict(argstr='--scalar_float ', ), sigma=dict(argstr='--sigma %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='--verbose ', ), ) inputs = dtiprocess.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_extractNrrdVectorIndex.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_extractNrrdVectorIndex.py index 8b9a65904f..ac5784f1c7 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_extractNrrdVectorIndex.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_extractNrrdVectorIndex.py @@ -10,11 +10,6 @@ def test_extractNrrdVectorIndex_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), outputVolume=dict( @@ -22,10 +17,6 @@ def test_extractNrrdVectorIndex_inputs(): hash_files=False, ), setImageOrientation=dict(argstr='--setImageOrientation %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), vectorIndex=dict(argstr='--vectorIndex %d', ), ) inputs = extractNrrdVectorIndex.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAnisotropyMap.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAnisotropyMap.py index dbd4ed60de..195d7dc3e1 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAnisotropyMap.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAnisotropyMap.py @@ -11,21 +11,12 @@ def test_gtractAnisotropyMap_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputTensorVolume=dict(argstr='--inputTensorVolume %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractAnisotropyMap.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAverageBvalues.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAverageBvalues.py index e8656a361f..fbb5bd6a55 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAverageBvalues.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractAverageBvalues.py @@ -12,21 +12,12 @@ def test_gtractAverageBvalues_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractAverageBvalues.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractClipAnisotropy.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractClipAnisotropy.py index 1b60024162..fed980c463 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractClipAnisotropy.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractClipAnisotropy.py @@ -12,21 +12,12 @@ def test_gtractClipAnisotropy_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractClipAnisotropy.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoRegAnatomy.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoRegAnatomy.py index da9f4d296b..456e1e79fa 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoRegAnatomy.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoRegAnatomy.py @@ -17,11 +17,6 @@ def test_gtractCoRegAnatomy_inputs(): argstr='--gridSize %s', sep=',', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputAnatomicalVolume=dict(argstr='--inputAnatomicalVolume %s', ), inputRigidTransform=dict(argstr='--inputRigidTransform %s', ), inputVolume=dict(argstr='--inputVolume %s', ), @@ -39,10 +34,6 @@ def test_gtractCoRegAnatomy_inputs(): relaxationFactor=dict(argstr='--relaxationFactor %f', ), samplingPercentage=dict(argstr='--samplingPercentage %f', ), spatialScale=dict(argstr='--spatialScale %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformType=dict(argstr='--transformType %s', ), translationScale=dict(argstr='--translationScale %f', ), useCenterOfHeadAlign=dict(argstr='--useCenterOfHeadAlign ', ), diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractConcatDwi.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractConcatDwi.py index 34c83788de..7b75858eff 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractConcatDwi.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractConcatDwi.py @@ -11,21 +11,12 @@ def test_gtractConcatDwi_inputs(): usedefault=True, ), ignoreOrigins=dict(argstr='--ignoreOrigins ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s...', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractConcatDwi.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCopyImageOrientation.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCopyImageOrientation.py index 84cb1d143f..d9e0b725c8 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCopyImageOrientation.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCopyImageOrientation.py @@ -10,11 +10,6 @@ def test_gtractCopyImageOrientation_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputReferenceVolume=dict(argstr='--inputReferenceVolume %s', ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), @@ -22,10 +17,6 @@ def test_gtractCopyImageOrientation_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractCopyImageOrientation.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoregBvalues.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoregBvalues.py index a2b49ed145..3143b16dfb 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoregBvalues.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCoregBvalues.py @@ -14,11 +14,6 @@ def test_gtractCoregBvalues_inputs(): ), fixedVolume=dict(argstr='--fixedVolume %s', ), fixedVolumeIndex=dict(argstr='--fixedVolumeIndex %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), maximumStepSize=dict(argstr='--maximumStepSize %f', ), minimumStepSize=dict(argstr='--minimumStepSize %f', ), movingVolume=dict(argstr='--movingVolume %s', ), @@ -37,10 +32,6 @@ def test_gtractCoregBvalues_inputs(): relaxationFactor=dict(argstr='--relaxationFactor %f', ), samplingPercentage=dict(argstr='--samplingPercentage %f', ), spatialScale=dict(argstr='--spatialScale %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractCoregBvalues.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCostFastMarching.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCostFastMarching.py index 79eb0e35e5..32d1e68898 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCostFastMarching.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCostFastMarching.py @@ -11,11 +11,6 @@ def test_gtractCostFastMarching_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputAnisotropyVolume=dict(argstr='--inputAnisotropyVolume %s', ), inputStartingSeedsLabelMapVolume=dict( argstr='--inputStartingSeedsLabelMapVolume %s', ), @@ -32,10 +27,6 @@ def test_gtractCostFastMarching_inputs(): seedThreshold=dict(argstr='--seedThreshold %f', ), startingSeedsLabel=dict(argstr='--startingSeedsLabel %d', ), stoppingValue=dict(argstr='--stoppingValue %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractCostFastMarching.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCreateGuideFiber.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCreateGuideFiber.py index dd4df64d47..bbe375bbb9 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCreateGuideFiber.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractCreateGuideFiber.py @@ -10,11 +10,6 @@ def test_gtractCreateGuideFiber_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputFiber=dict(argstr='--inputFiber %s', ), numberOfPoints=dict(argstr='--numberOfPoints %d', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), @@ -22,10 +17,6 @@ def test_gtractCreateGuideFiber_inputs(): argstr='--outputFiber %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), writeXMLPolyDataFile=dict(argstr='--writeXMLPolyDataFile ', ), ) inputs = gtractCreateGuideFiber.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFastMarchingTracking.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFastMarchingTracking.py index 384fb5fa32..ec3a99b91e 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFastMarchingTracking.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFastMarchingTracking.py @@ -11,11 +11,6 @@ def test_gtractFastMarchingTracking_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputAnisotropyVolume=dict(argstr='--inputAnisotropyVolume %s', ), inputCostVolume=dict(argstr='--inputCostVolume %s', ), inputStartingSeedsLabelMapVolume=dict( @@ -31,10 +26,6 @@ def test_gtractFastMarchingTracking_inputs(): ), seedThreshold=dict(argstr='--seedThreshold %f', ), startingSeedsLabel=dict(argstr='--startingSeedsLabel %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trackingThreshold=dict(argstr='--trackingThreshold %f', ), writeXMLPolyDataFile=dict(argstr='--writeXMLPolyDataFile ', ), ) diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFiberTracking.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFiberTracking.py index 52edd05bd6..96c93b8b64 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFiberTracking.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractFiberTracking.py @@ -16,11 +16,6 @@ def test_gtractFiberTracking_inputs(): ), guidedCurvatureThreshold=dict( argstr='--guidedCurvatureThreshold %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputAnisotropyVolume=dict(argstr='--inputAnisotropyVolume %s', ), inputEndingSeedsLabelMapVolume=dict( argstr='--inputEndingSeedsLabelMapVolume %s', ), @@ -43,10 +38,6 @@ def test_gtractFiberTracking_inputs(): stepSize=dict(argstr='--stepSize %f', ), tendF=dict(argstr='--tendF %f', ), tendG=dict(argstr='--tendG %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trackingMethod=dict(argstr='--trackingMethod %s', ), trackingThreshold=dict(argstr='--trackingThreshold %f', ), useLoopDetection=dict(argstr='--useLoopDetection ', ), diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractImageConformity.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractImageConformity.py index bd4b6193d1..9ddde832b2 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractImageConformity.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractImageConformity.py @@ -10,11 +10,6 @@ def test_gtractImageConformity_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputReferenceVolume=dict(argstr='--inputReferenceVolume %s', ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), @@ -22,10 +17,6 @@ def test_gtractImageConformity_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractImageConformity.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertBSplineTransform.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertBSplineTransform.py index 4a942b2fed..ca642ceb66 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertBSplineTransform.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertBSplineTransform.py @@ -10,11 +10,6 @@ def test_gtractInvertBSplineTransform_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputReferenceVolume=dict(argstr='--inputReferenceVolume %s', ), inputTransform=dict(argstr='--inputTransform %s', ), landmarkDensity=dict( @@ -26,10 +21,6 @@ def test_gtractInvertBSplineTransform_inputs(): argstr='--outputTransform %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractInvertBSplineTransform.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertDisplacementField.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertDisplacementField.py index f3f62ba216..e4fd213d39 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertDisplacementField.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertDisplacementField.py @@ -12,21 +12,12 @@ def test_gtractInvertDisplacementField_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), subsamplingFactor=dict(argstr='--subsamplingFactor %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractInvertDisplacementField.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertRigidTransform.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertRigidTransform.py index e3022d47d9..c035862663 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertRigidTransform.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractInvertRigidTransform.py @@ -10,21 +10,12 @@ def test_gtractInvertRigidTransform_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputTransform=dict(argstr='--inputTransform %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), outputTransform=dict( argstr='--outputTransform %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractInvertRigidTransform.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleAnisotropy.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleAnisotropy.py index e7ff3d6f49..43f428b233 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleAnisotropy.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleAnisotropy.py @@ -10,11 +10,6 @@ def test_gtractResampleAnisotropy_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputAnatomicalVolume=dict(argstr='--inputAnatomicalVolume %s', ), inputAnisotropyVolume=dict(argstr='--inputAnisotropyVolume %s', ), inputTransform=dict(argstr='--inputTransform %s', ), @@ -23,10 +18,6 @@ def test_gtractResampleAnisotropy_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformType=dict(argstr='--transformType %s', ), ) inputs = gtractResampleAnisotropy.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleB0.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleB0.py index f579fbc08b..812afca5c0 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleB0.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleB0.py @@ -10,11 +10,6 @@ def test_gtractResampleB0_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputAnatomicalVolume=dict(argstr='--inputAnatomicalVolume %s', ), inputTransform=dict(argstr='--inputTransform %s', ), inputVolume=dict(argstr='--inputVolume %s', ), @@ -23,10 +18,6 @@ def test_gtractResampleB0_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformType=dict(argstr='--transformType %s', ), vectorIndex=dict(argstr='--vectorIndex %d', ), ) diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleCodeImage.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleCodeImage.py index a693f89eb4..decc017c60 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleCodeImage.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleCodeImage.py @@ -10,11 +10,6 @@ def test_gtractResampleCodeImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputCodeVolume=dict(argstr='--inputCodeVolume %s', ), inputReferenceVolume=dict(argstr='--inputReferenceVolume %s', ), inputTransform=dict(argstr='--inputTransform %s', ), @@ -23,10 +18,6 @@ def test_gtractResampleCodeImage_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformType=dict(argstr='--transformType %s', ), ) inputs = gtractResampleCodeImage.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleDWIInPlace.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleDWIInPlace.py index 6157775575..b815d3d3d6 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleDWIInPlace.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleDWIInPlace.py @@ -11,11 +11,6 @@ def test_gtractResampleDWIInPlace_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), imageOutputSize=dict( argstr='--imageOutputSize %s', sep=',', @@ -32,10 +27,6 @@ def test_gtractResampleDWIInPlace_inputs(): hash_files=False, ), referenceVolume=dict(argstr='--referenceVolume %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warpDWITransform=dict(argstr='--warpDWITransform %s', ), ) inputs = gtractResampleDWIInPlace.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleFibers.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleFibers.py index cbdb701706..d0d2cd5664 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleFibers.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractResampleFibers.py @@ -10,11 +10,6 @@ def test_gtractResampleFibers_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputForwardDeformationFieldVolume=dict( argstr='--inputForwardDeformationFieldVolume %s', ), inputReverseDeformationFieldVolume=dict( @@ -25,10 +20,6 @@ def test_gtractResampleFibers_inputs(): argstr='--outputTract %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), writeXMLPolyDataFile=dict(argstr='--writeXMLPolyDataFile ', ), ) inputs = gtractResampleFibers.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTensor.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTensor.py index ff5b5efde5..ead96d1c71 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTensor.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTensor.py @@ -18,11 +18,6 @@ def test_gtractTensor_inputs(): argstr='--ignoreIndex %s', sep=',', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), maskProcessingMode=dict(argstr='--maskProcessingMode %s', ), maskVolume=dict(argstr='--maskVolume %s', ), @@ -37,10 +32,6 @@ def test_gtractTensor_inputs(): ), resampleIsotropic=dict(argstr='--resampleIsotropic ', ), size=dict(argstr='--size %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractTensor.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTransformToDisplacementField.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTransformToDisplacementField.py index c7888ede29..2dfde189e2 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTransformToDisplacementField.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_gtractTransformToDisplacementField.py @@ -10,11 +10,6 @@ def test_gtractTransformToDisplacementField_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputReferenceVolume=dict(argstr='--inputReferenceVolume %s', ), inputTransform=dict(argstr='--inputTransform %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), @@ -22,10 +17,6 @@ def test_gtractTransformToDisplacementField_inputs(): argstr='--outputDeformationFieldVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = gtractTransformToDisplacementField.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tests/test_auto_maxcurvature.py b/nipype/interfaces/semtools/diffusion/tests/test_auto_maxcurvature.py index 057be11567..cc06c5ede5 100644 --- a/nipype/interfaces/semtools/diffusion/tests/test_auto_maxcurvature.py +++ b/nipype/interfaces/semtools/diffusion/tests/test_auto_maxcurvature.py @@ -10,21 +10,12 @@ def test_maxcurvature_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image=dict(argstr='--image %s', ), output=dict( argstr='--output %s', hash_files=False, ), sigma=dict(argstr='--sigma %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='--verbose ', ), ) inputs = maxcurvature.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_UKFTractography.py b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_UKFTractography.py index 5592e86a09..7c61974ef3 100644 --- a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_UKFTractography.py +++ b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_UKFTractography.py @@ -17,11 +17,6 @@ def test_UKFTractography_inputs(): ), freeWater=dict(argstr='--freeWater ', ), fullTensorModel=dict(argstr='--fullTensorModel ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), labels=dict( argstr='--labels %s', sep=',', @@ -47,10 +42,6 @@ def test_UKFTractography_inputs(): seedsPerVoxel=dict(argstr='--seedsPerVoxel %d', ), stepLength=dict(argstr='--stepLength %f', ), storeGlyphs=dict(argstr='--storeGlyphs ', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tracts=dict( argstr='--tracts %s', hash_files=False, diff --git a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberprocess.py b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberprocess.py index b61399fbdd..b4756a9406 100644 --- a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberprocess.py +++ b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberprocess.py @@ -18,20 +18,11 @@ def test_fiberprocess_inputs(): ), fiber_radius=dict(argstr='--fiber_radius %f', ), h_field=dict(argstr='--h_field %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), index_space=dict(argstr='--index_space ', ), noDataChange=dict(argstr='--noDataChange ', ), no_warp=dict(argstr='--no_warp ', ), saveProperties=dict(argstr='--saveProperties ', ), tensor_volume=dict(argstr='--tensor_volume %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='--verbose ', ), voxel_label=dict(argstr='--voxel_label %d', ), voxelize=dict( diff --git a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberstats.py b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberstats.py index dd0cd348e4..d6f3a5cd50 100644 --- a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberstats.py +++ b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fiberstats.py @@ -11,15 +11,6 @@ def test_fiberstats_inputs(): usedefault=True, ), fiber_file=dict(argstr='--fiber_file %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='--verbose ', ), ) inputs = fiberstats.input_spec() diff --git a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fibertrack.py b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fibertrack.py index 83b5d20b68..33e57c0ca3 100644 --- a/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fibertrack.py +++ b/nipype/interfaces/semtools/diffusion/tractography/tests/test_auto_fibertrack.py @@ -12,11 +12,6 @@ def test_fibertrack_inputs(): ), forbidden_label=dict(argstr='--forbidden_label %d', ), force=dict(argstr='--force ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_roi_file=dict(argstr='--input_roi_file %s', ), input_tensor_file=dict(argstr='--input_tensor_file %s', ), max_angle=dict(argstr='--max_angle %f', ), @@ -29,10 +24,6 @@ def test_fibertrack_inputs(): source_label=dict(argstr='--source_label %d', ), step_size=dict(argstr='--step_size %f', ), target_label=dict(argstr='--target_label %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='--verbose ', ), whole_brain=dict(argstr='--whole_brain ', ), ) diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_CannyEdge.py b/nipype/interfaces/semtools/filtering/tests/test_auto_CannyEdge.py index 9abfd5d755..cfbee7449c 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_CannyEdge.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_CannyEdge.py @@ -10,21 +10,12 @@ def test_CannyEdge_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), lowerThreshold=dict(argstr='--lowerThreshold %f', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upperThreshold=dict(argstr='--upperThreshold %f', ), variance=dict(argstr='--variance %f', ), ) diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_CannySegmentationLevelSetImageFilter.py b/nipype/interfaces/semtools/filtering/tests/test_auto_CannySegmentationLevelSetImageFilter.py index cc8cd50417..b4196db823 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_CannySegmentationLevelSetImageFilter.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_CannySegmentationLevelSetImageFilter.py @@ -13,11 +13,6 @@ def test_CannySegmentationLevelSetImageFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialModel=dict(argstr='--initialModel %s', ), initialModelIsovalue=dict(argstr='--initialModelIsovalue %f', ), inputVolume=dict(argstr='--inputVolume %s', ), @@ -30,10 +25,6 @@ def test_CannySegmentationLevelSetImageFilter_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = CannySegmentationLevelSetImageFilter.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_DilateImage.py b/nipype/interfaces/semtools/filtering/tests/test_auto_DilateImage.py index ab559722bc..7945ec8ade 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_DilateImage.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_DilateImage.py @@ -10,11 +10,6 @@ def test_DilateImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMaskVolume=dict(argstr='--inputMaskVolume %s', ), inputRadius=dict(argstr='--inputRadius %d', ), inputVolume=dict(argstr='--inputVolume %s', ), @@ -22,10 +17,6 @@ def test_DilateImage_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DilateImage.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_DilateMask.py b/nipype/interfaces/semtools/filtering/tests/test_auto_DilateMask.py index acfc4e0048..6bd6235e80 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_DilateMask.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_DilateMask.py @@ -10,11 +10,6 @@ def test_DilateMask_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputBinaryVolume=dict(argstr='--inputBinaryVolume %s', ), inputVolume=dict(argstr='--inputVolume %s', ), lowerThreshold=dict(argstr='--lowerThreshold %f', ), @@ -23,10 +18,6 @@ def test_DilateMask_inputs(): hash_files=False, ), sizeStructuralElement=dict(argstr='--sizeStructuralElement %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DilateMask.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_DistanceMaps.py b/nipype/interfaces/semtools/filtering/tests/test_auto_DistanceMaps.py index 9fe6cff9f0..f7aaf722c4 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_DistanceMaps.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_DistanceMaps.py @@ -10,11 +10,6 @@ def test_DistanceMaps_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputLabelVolume=dict(argstr='--inputLabelVolume %s', ), inputMaskVolume=dict(argstr='--inputMaskVolume %s', ), inputTissueLabel=dict(argstr='--inputTissueLabel %d', ), @@ -22,10 +17,6 @@ def test_DistanceMaps_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DistanceMaps.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_DumpBinaryTrainingVectors.py b/nipype/interfaces/semtools/filtering/tests/test_auto_DumpBinaryTrainingVectors.py index f1fa2787ca..320bb76b77 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_DumpBinaryTrainingVectors.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_DumpBinaryTrainingVectors.py @@ -10,17 +10,8 @@ def test_DumpBinaryTrainingVectors_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputHeaderFilename=dict(argstr='--inputHeaderFilename %s', ), inputVectorFilename=dict(argstr='--inputVectorFilename %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DumpBinaryTrainingVectors.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_ErodeImage.py b/nipype/interfaces/semtools/filtering/tests/test_auto_ErodeImage.py index 92452dd097..9e096b0062 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_ErodeImage.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_ErodeImage.py @@ -10,11 +10,6 @@ def test_ErodeImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMaskVolume=dict(argstr='--inputMaskVolume %s', ), inputRadius=dict(argstr='--inputRadius %d', ), inputVolume=dict(argstr='--inputVolume %s', ), @@ -22,10 +17,6 @@ def test_ErodeImage_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ErodeImage.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_FlippedDifference.py b/nipype/interfaces/semtools/filtering/tests/test_auto_FlippedDifference.py index 379a87a8cd..539660f73b 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_FlippedDifference.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_FlippedDifference.py @@ -10,21 +10,12 @@ def test_FlippedDifference_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMaskVolume=dict(argstr='--inputMaskVolume %s', ), inputVolume=dict(argstr='--inputVolume %s', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FlippedDifference.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateBrainClippedImage.py b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateBrainClippedImage.py index d86f57feaa..0a211f23d2 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateBrainClippedImage.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateBrainClippedImage.py @@ -10,11 +10,6 @@ def test_GenerateBrainClippedImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputImg=dict(argstr='--inputImg %s', ), inputMsk=dict(argstr='--inputMsk %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), @@ -22,10 +17,6 @@ def test_GenerateBrainClippedImage_inputs(): argstr='--outputFileName %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = GenerateBrainClippedImage.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateSummedGradientImage.py b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateSummedGradientImage.py index c340550313..58d3f35c5a 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateSummedGradientImage.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateSummedGradientImage.py @@ -11,11 +11,6 @@ def test_GenerateSummedGradientImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume1=dict(argstr='--inputVolume1 %s', ), inputVolume2=dict(argstr='--inputVolume2 %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), @@ -23,10 +18,6 @@ def test_GenerateSummedGradientImage_inputs(): argstr='--outputFileName %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = GenerateSummedGradientImage.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateTestImage.py b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateTestImage.py index c195dda481..1348e61d4b 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateTestImage.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_GenerateTestImage.py @@ -10,11 +10,6 @@ def test_GenerateTestImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), lowerBoundOfOutputVolume=dict( argstr='--lowerBoundOfOutputVolume %f', ), @@ -23,10 +18,6 @@ def test_GenerateTestImage_inputs(): hash_files=False, ), outputVolumeSize=dict(argstr='--outputVolumeSize %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upperBoundOfOutputVolume=dict( argstr='--upperBoundOfOutputVolume %f', ), ) diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_GradientAnisotropicDiffusionImageFilter.py b/nipype/interfaces/semtools/filtering/tests/test_auto_GradientAnisotropicDiffusionImageFilter.py index eb8529d541..27ebb18d29 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_GradientAnisotropicDiffusionImageFilter.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_GradientAnisotropicDiffusionImageFilter.py @@ -11,21 +11,12 @@ def test_GradientAnisotropicDiffusionImageFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfIterations=dict(argstr='--numberOfIterations %d', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timeStep=dict(argstr='--timeStep %f', ), ) inputs = GradientAnisotropicDiffusionImageFilter.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_HammerAttributeCreator.py b/nipype/interfaces/semtools/filtering/tests/test_auto_HammerAttributeCreator.py index 079cd20298..9ad82598bb 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_HammerAttributeCreator.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_HammerAttributeCreator.py @@ -12,19 +12,10 @@ def test_HammerAttributeCreator_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputCSFVolume=dict(argstr='--inputCSFVolume %s', ), inputGMVolume=dict(argstr='--inputGMVolume %s', ), inputWMVolume=dict(argstr='--inputWMVolume %s', ), outputVolumeBase=dict(argstr='--outputVolumeBase %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = HammerAttributeCreator.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMean.py b/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMean.py index bf35b6beed..c6b1ef20a9 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMean.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMean.py @@ -10,11 +10,6 @@ def test_NeighborhoodMean_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMaskVolume=dict(argstr='--inputMaskVolume %s', ), inputRadius=dict(argstr='--inputRadius %d', ), inputVolume=dict(argstr='--inputVolume %s', ), @@ -22,10 +17,6 @@ def test_NeighborhoodMean_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = NeighborhoodMean.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMedian.py b/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMedian.py index 8f0da1f50b..2c2b2d585f 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMedian.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_NeighborhoodMedian.py @@ -10,11 +10,6 @@ def test_NeighborhoodMedian_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMaskVolume=dict(argstr='--inputMaskVolume %s', ), inputRadius=dict(argstr='--inputRadius %d', ), inputVolume=dict(argstr='--inputVolume %s', ), @@ -22,10 +17,6 @@ def test_NeighborhoodMedian_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = NeighborhoodMedian.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_STAPLEAnalysis.py b/nipype/interfaces/semtools/filtering/tests/test_auto_STAPLEAnalysis.py index 08f5615d97..75bb83315f 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_STAPLEAnalysis.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_STAPLEAnalysis.py @@ -10,21 +10,12 @@ def test_STAPLEAnalysis_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputDimension=dict(argstr='--inputDimension %d', ), inputLabelVolume=dict(argstr='--inputLabelVolume %s...', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = STAPLEAnalysis.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_TextureFromNoiseImageFilter.py b/nipype/interfaces/semtools/filtering/tests/test_auto_TextureFromNoiseImageFilter.py index 2964da9347..cd4b4a1af2 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_TextureFromNoiseImageFilter.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_TextureFromNoiseImageFilter.py @@ -10,21 +10,12 @@ def test_TextureFromNoiseImageFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputRadius=dict(argstr='--inputRadius %d', ), inputVolume=dict(argstr='--inputVolume %s', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TextureFromNoiseImageFilter.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_TextureMeasureFilter.py b/nipype/interfaces/semtools/filtering/tests/test_auto_TextureMeasureFilter.py index cf9c60b8b9..0ad523c7d0 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_TextureMeasureFilter.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_TextureMeasureFilter.py @@ -11,11 +11,6 @@ def test_TextureMeasureFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMaskVolume=dict(argstr='--inputMaskVolume %s', ), inputVolume=dict(argstr='--inputVolume %s', ), insideROIValue=dict(argstr='--insideROIValue %f', ), @@ -23,10 +18,6 @@ def test_TextureMeasureFilter_inputs(): argstr='--outputFilename %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = TextureMeasureFilter.input_spec() diff --git a/nipype/interfaces/semtools/filtering/tests/test_auto_UnbiasedNonLocalMeans.py b/nipype/interfaces/semtools/filtering/tests/test_auto_UnbiasedNonLocalMeans.py index a5784b72cf..b84cda1fc3 100644 --- a/nipype/interfaces/semtools/filtering/tests/test_auto_UnbiasedNonLocalMeans.py +++ b/nipype/interfaces/semtools/filtering/tests/test_auto_UnbiasedNonLocalMeans.py @@ -11,11 +11,6 @@ def test_UnbiasedNonLocalMeans_inputs(): usedefault=True, ), hp=dict(argstr='--hp %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -35,10 +30,6 @@ def test_UnbiasedNonLocalMeans_inputs(): sep=',', ), sigma=dict(argstr='--sigma %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = UnbiasedNonLocalMeans.input_spec() diff --git a/nipype/interfaces/semtools/legacy/tests/test_auto_scalartransform.py b/nipype/interfaces/semtools/legacy/tests/test_auto_scalartransform.py index b4ad7cc6f9..f9ff60cfd9 100644 --- a/nipype/interfaces/semtools/legacy/tests/test_auto_scalartransform.py +++ b/nipype/interfaces/semtools/legacy/tests/test_auto_scalartransform.py @@ -12,11 +12,6 @@ def test_scalartransform_inputs(): usedefault=True, ), h_field=dict(argstr='--h_field ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_image=dict(argstr='--input_image %s', ), interpolation=dict(argstr='--interpolation %s', ), invert=dict(argstr='--invert ', ), @@ -24,10 +19,6 @@ def test_scalartransform_inputs(): argstr='--output_image %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformation=dict( argstr='--transformation %s', hash_files=False, diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSDemonWarp.py b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSDemonWarp.py index 535122ef38..c631f9b96e 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSDemonWarp.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSDemonWarp.py @@ -24,11 +24,6 @@ def test_BRAINSDemonWarp_inputs(): gradient_type=dict(argstr='--gradient_type %s', ), gui=dict(argstr='--gui ', ), histogramMatch=dict(argstr='--histogramMatch ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initializeWithDisplacementField=dict( argstr='--initializeWithDisplacementField %s', ), initializeWithTransform=dict(argstr='--initializeWithTransform %s', ), @@ -86,10 +81,6 @@ def test_BRAINSDemonWarp_inputs(): ), smoothDisplacementFieldSigma=dict( argstr='--smoothDisplacementFieldSigma %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upFieldSmoothing=dict(argstr='--upFieldSmoothing %f', ), upperThresholdForBOBF=dict(argstr='--upperThresholdForBOBF %d', ), use_vanilla_dem=dict(argstr='--use_vanilla_dem ', ), diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSFit.py b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSFit.py index e9dd62c406..18059c4f57 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSFit.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSFit.py @@ -28,11 +28,6 @@ def test_BRAINSFit_inputs(): fixedVolumeTimeIndex=dict(argstr='--fixedVolumeTimeIndex %d', ), gui=dict(argstr='--gui ', ), histogramMatch=dict(argstr='--histogramMatch ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialTransform=dict(argstr='--initialTransform %s', ), initializeRegistrationByCurrentGenericTransform=dict( argstr='--initializeRegistrationByCurrentGenericTransform ', ), @@ -110,10 +105,6 @@ def test_BRAINSFit_inputs(): argstr='--strippedOutputTransform %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformType=dict( argstr='--transformType %s', sep=',', diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResample.py b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResample.py index 5a6e0beefe..98ec5f4ff3 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResample.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResample.py @@ -16,11 +16,6 @@ def test_BRAINSResample_inputs(): argstr='--gridSpacing %s', sep=',', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), interpolationMode=dict(argstr='--interpolationMode %s', ), inverseTransform=dict(argstr='--inverseTransform ', ), @@ -31,10 +26,6 @@ def test_BRAINSResample_inputs(): ), pixelType=dict(argstr='--pixelType %s', ), referenceVolume=dict(argstr='--referenceVolume %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warpTransform=dict(argstr='--warpTransform %s', ), ) inputs = BRAINSResample.input_spec() diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResize.py b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResize.py index 7587bf648c..4ce0d7159c 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResize.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSResize.py @@ -10,11 +10,6 @@ def test_BRAINSResize_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), outputVolume=dict( argstr='--outputVolume %s', @@ -22,10 +17,6 @@ def test_BRAINSResize_inputs(): ), pixelType=dict(argstr='--pixelType %s', ), scaleFactor=dict(argstr='--scaleFactor %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSResize.input_spec() diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSTransformFromFiducials.py b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSTransformFromFiducials.py index c7e25825b9..2a700eaac7 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSTransformFromFiducials.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_BRAINSTransformFromFiducials.py @@ -12,11 +12,6 @@ def test_BRAINSTransformFromFiducials_inputs(): ), fixedLandmarks=dict(argstr='--fixedLandmarks %s...', ), fixedLandmarksFile=dict(argstr='--fixedLandmarksFile %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), movingLandmarks=dict(argstr='--movingLandmarks %s...', ), movingLandmarksFile=dict(argstr='--movingLandmarksFile %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), @@ -24,10 +19,6 @@ def test_BRAINSTransformFromFiducials_inputs(): argstr='--saveTransform %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformType=dict(argstr='--transformType %s', ), ) inputs = BRAINSTransformFromFiducials.input_spec() diff --git a/nipype/interfaces/semtools/registration/tests/test_auto_VBRAINSDemonWarp.py b/nipype/interfaces/semtools/registration/tests/test_auto_VBRAINSDemonWarp.py index d4e7c12a7f..b3255da1d3 100644 --- a/nipype/interfaces/semtools/registration/tests/test_auto_VBRAINSDemonWarp.py +++ b/nipype/interfaces/semtools/registration/tests/test_auto_VBRAINSDemonWarp.py @@ -24,11 +24,6 @@ def test_VBRAINSDemonWarp_inputs(): gradient_type=dict(argstr='--gradient_type %s', ), gui=dict(argstr='--gui ', ), histogramMatch=dict(argstr='--histogramMatch ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initializeWithDisplacementField=dict( argstr='--initializeWithDisplacementField %s', ), initializeWithTransform=dict(argstr='--initializeWithTransform %s', ), @@ -86,10 +81,6 @@ def test_VBRAINSDemonWarp_inputs(): ), smoothDisplacementFieldSigma=dict( argstr='--smoothDisplacementFieldSigma %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upFieldSmoothing=dict(argstr='--upFieldSmoothing %f', ), upperThresholdForBOBF=dict(argstr='--upperThresholdForBOBF %d', ), use_vanilla_dem=dict(argstr='--use_vanilla_dem ', ), diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSABC.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSABC.py index da9565dfca..2d66884522 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSABC.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSABC.py @@ -31,11 +31,6 @@ def test_BRAINSABC_inputs(): argstr='--gridSize %s', sep=',', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), implicitOutputs=dict( argstr='--implicitOutputs %s...', hash_files=False, @@ -83,10 +78,6 @@ def test_BRAINSABC_inputs(): ), subjectIntermodeTransformType=dict( argstr='--subjectIntermodeTransformType %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), useKNN=dict(argstr='--useKNN ', ), writeLess=dict(argstr='--writeLess ', ), ) diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSConstellationDetector.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSConstellationDetector.py index 31fbccd144..9b2d10061c 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSConstellationDetector.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSConstellationDetector.py @@ -37,11 +37,6 @@ def test_BRAINSConstellationDetector_inputs(): sep=',', ), houghEyeDetectorMode=dict(argstr='--houghEyeDetectorMode %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputLandmarksEMSP=dict(argstr='--inputLandmarksEMSP %s', ), inputTemplateModel=dict(argstr='--inputTemplateModel %s', ), inputVolume=dict(argstr='--inputVolume %s', ), @@ -94,10 +89,6 @@ def test_BRAINSConstellationDetector_inputs(): ), rmpj=dict(argstr='--rmpj %f', ), rpc=dict(argstr='--rpc %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trimRescaledIntensities=dict(argstr='--trimRescaledIntensities %f', ), verbose=dict(argstr='--verbose ', ), writeBranded2DImage=dict( diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCreateLabelMapFromProbabilityMaps.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCreateLabelMapFromProbabilityMaps.py index 1e9f7bfeda..9f2b00c311 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCreateLabelMapFromProbabilityMaps.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCreateLabelMapFromProbabilityMaps.py @@ -22,11 +22,6 @@ def test_BRAINSCreateLabelMapFromProbabilityMaps_inputs(): argstr='--foregroundPriors %s', sep=',', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inclusionThreshold=dict(argstr='--inclusionThreshold %f', ), inputProbabilityVolume=dict(argstr='--inputProbabilityVolume %s...', ), nonAirRegionMask=dict(argstr='--nonAirRegionMask %s', ), @@ -34,10 +29,6 @@ def test_BRAINSCreateLabelMapFromProbabilityMaps_inputs(): argstr='--priorLabelCodes %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSCreateLabelMapFromProbabilityMaps.input_spec() diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCut.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCut.py index 8d4e8a018e..9d66d4a463 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCut.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSCut.py @@ -17,11 +17,6 @@ def test_BRAINSCut_inputs(): ), generateProbability=dict(argstr='--generateProbability ', ), histogramEqualization=dict(argstr='--histogramEqualization ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), method=dict(argstr='--method %s', ), modelConfigurationFilename=dict( argstr='--modelConfigurationFilename %s', ), @@ -30,10 +25,6 @@ def test_BRAINSCut_inputs(): netConfiguration=dict(argstr='--netConfiguration %s', ), numberOfTrees=dict(argstr='--numberOfTrees %d', ), randomTreeDepth=dict(argstr='--randomTreeDepth %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trainModel=dict(argstr='--trainModel ', ), trainModelStartIndex=dict(argstr='--trainModelStartIndex %d', ), validate=dict(argstr='--validate ', ), diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSMultiSTAPLE.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSMultiSTAPLE.py index b879ea9442..826ec19f0e 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSMultiSTAPLE.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSMultiSTAPLE.py @@ -10,11 +10,6 @@ def test_BRAINSMultiSTAPLE_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputCompositeT1Volume=dict(argstr='--inputCompositeT1Volume %s', ), inputLabelVolume=dict(argstr='--inputLabelVolume %s...', ), inputTransform=dict(argstr='--inputTransform %s...', ), @@ -29,10 +24,6 @@ def test_BRAINSMultiSTAPLE_inputs(): ), resampledVolumePrefix=dict(argstr='--resampledVolumePrefix %s', ), skipResampling=dict(argstr='--skipResampling ', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSMultiSTAPLE.input_spec() diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSROIAuto.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSROIAuto.py index e3414b7320..3e70b75883 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSROIAuto.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BRAINSROIAuto.py @@ -13,11 +13,6 @@ def test_BRAINSROIAuto_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), maskOutput=dict(argstr='--maskOutput ', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), @@ -31,10 +26,6 @@ def test_BRAINSROIAuto_inputs(): hash_files=False, ), outputVolumePixelType=dict(argstr='--outputVolumePixelType %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thresholdCorrectionFactor=dict( argstr='--thresholdCorrectionFactor %f', ), ) diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_BinaryMaskEditorBasedOnLandmarks.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_BinaryMaskEditorBasedOnLandmarks.py index a6569264a3..d71e7003ff 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_BinaryMaskEditorBasedOnLandmarks.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_BinaryMaskEditorBasedOnLandmarks.py @@ -10,11 +10,6 @@ def test_BinaryMaskEditorBasedOnLandmarks_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputBinaryVolume=dict(argstr='--inputBinaryVolume %s', ), inputLandmarkNames=dict( argstr='--inputLandmarkNames %s', @@ -37,10 +32,6 @@ def test_BinaryMaskEditorBasedOnLandmarks_inputs(): argstr='--setCutDirectionForObliquePlane %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BinaryMaskEditorBasedOnLandmarks.input_spec() diff --git a/nipype/interfaces/semtools/segmentation/tests/test_auto_ESLR.py b/nipype/interfaces/semtools/segmentation/tests/test_auto_ESLR.py index cc14b572af..2e099b4f56 100644 --- a/nipype/interfaces/semtools/segmentation/tests/test_auto_ESLR.py +++ b/nipype/interfaces/semtools/segmentation/tests/test_auto_ESLR.py @@ -12,11 +12,6 @@ def test_ESLR_inputs(): usedefault=True, ), high=dict(argstr='--high %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), low=dict(argstr='--low %d', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), @@ -27,10 +22,6 @@ def test_ESLR_inputs(): ), preserveOutside=dict(argstr='--preserveOutside ', ), safetySize=dict(argstr='--safetySize %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ESLR.input_spec() diff --git a/nipype/interfaces/semtools/tests/test_auto_DWICompare.py b/nipype/interfaces/semtools/tests/test_auto_DWICompare.py index d6e193264d..c00b0cc36f 100644 --- a/nipype/interfaces/semtools/tests/test_auto_DWICompare.py +++ b/nipype/interfaces/semtools/tests/test_auto_DWICompare.py @@ -10,17 +10,8 @@ def test_DWICompare_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume1=dict(argstr='--inputVolume1 %s', ), inputVolume2=dict(argstr='--inputVolume2 %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DWICompare.input_spec() diff --git a/nipype/interfaces/semtools/tests/test_auto_DWISimpleCompare.py b/nipype/interfaces/semtools/tests/test_auto_DWISimpleCompare.py index 5a274eedab..e515bc613c 100644 --- a/nipype/interfaces/semtools/tests/test_auto_DWISimpleCompare.py +++ b/nipype/interfaces/semtools/tests/test_auto_DWISimpleCompare.py @@ -11,17 +11,8 @@ def test_DWISimpleCompare_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume1=dict(argstr='--inputVolume1 %s', ), inputVolume2=dict(argstr='--inputVolume2 %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DWISimpleCompare.input_spec() diff --git a/nipype/interfaces/semtools/tests/test_auto_GenerateCsfClippedFromClassifiedImage.py b/nipype/interfaces/semtools/tests/test_auto_GenerateCsfClippedFromClassifiedImage.py index e5fd94f7c0..63f45831af 100644 --- a/nipype/interfaces/semtools/tests/test_auto_GenerateCsfClippedFromClassifiedImage.py +++ b/nipype/interfaces/semtools/tests/test_auto_GenerateCsfClippedFromClassifiedImage.py @@ -10,20 +10,11 @@ def test_GenerateCsfClippedFromClassifiedImage_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputCassifiedVolume=dict(argstr='--inputCassifiedVolume %s', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = GenerateCsfClippedFromClassifiedImage.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSAlignMSP.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSAlignMSP.py index a2fe2a0a06..27b65a4eba 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSAlignMSP.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSAlignMSP.py @@ -15,11 +15,6 @@ def test_BRAINSAlignMSP_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), interpolationMode=dict(argstr='--interpolationMode %s', ), mspQualityLevel=dict(argstr='--mspQualityLevel %d', ), @@ -33,10 +28,6 @@ def test_BRAINSAlignMSP_inputs(): argstr='--resultsDir %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trimRescaledIntensities=dict(argstr='--trimRescaledIntensities %f', ), verbose=dict(argstr='--verbose ', ), writedebuggingImagesLevel=dict( diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSClipInferior.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSClipInferior.py index b1d3fca432..7a0528f201 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSClipInferior.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSClipInferior.py @@ -12,21 +12,12 @@ def test_BRAINSClipInferior_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSClipInferior.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSConstellationModeler.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSConstellationModeler.py index 70cb6ab7be..a124ad60d9 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSConstellationModeler.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSConstellationModeler.py @@ -11,11 +11,6 @@ def test_BRAINSConstellationModeler_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputTrainingList=dict(argstr='--inputTrainingList %s', ), mspQualityLevel=dict(argstr='--mspQualityLevel %d', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), @@ -35,10 +30,6 @@ def test_BRAINSConstellationModeler_inputs(): hash_files=False, ), saveOptimizedLandmarks=dict(argstr='--saveOptimizedLandmarks ', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), trimRescaledIntensities=dict(argstr='--trimRescaledIntensities %f', ), verbose=dict(argstr='--verbose ', ), writedebuggingImagesLevel=dict( diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSEyeDetector.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSEyeDetector.py index 991d4415f0..9df3c8b8d6 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSEyeDetector.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSEyeDetector.py @@ -11,21 +11,12 @@ def test_BRAINSEyeDetector_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), outputVolume=dict( argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSEyeDetector.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSInitializedControlPoints.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSInitializedControlPoints.py index db438c9b57..bc3807f9f8 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSInitializedControlPoints.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSInitializedControlPoints.py @@ -10,11 +10,6 @@ def test_BRAINSInitializedControlPoints_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), outputLandmarksFile=dict(argstr='--outputLandmarksFile %s', ), @@ -30,10 +25,6 @@ def test_BRAINSInitializedControlPoints_inputs(): argstr='--splineGridSize %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSInitializedControlPoints.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLandmarkInitializer.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLandmarkInitializer.py index 8a2173c292..2456b8fb4d 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLandmarkInitializer.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLandmarkInitializer.py @@ -10,11 +10,6 @@ def test_BRAINSLandmarkInitializer_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputFixedLandmarkFilename=dict( argstr='--inputFixedLandmarkFilename %s', ), inputMovingLandmarkFilename=dict( @@ -24,10 +19,6 @@ def test_BRAINSLandmarkInitializer_inputs(): argstr='--outputTransformFilename %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSLandmarkInitializer.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLinearModelerEPCA.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLinearModelerEPCA.py index 7d7d8301f1..b6b83baa12 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLinearModelerEPCA.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLinearModelerEPCA.py @@ -10,17 +10,8 @@ def test_BRAINSLinearModelerEPCA_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputTrainingList=dict(argstr='--inputTrainingList %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSLinearModelerEPCA.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLmkTransform.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLmkTransform.py index ad7f9f99db..262d948029 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLmkTransform.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSLmkTransform.py @@ -10,11 +10,6 @@ def test_BRAINSLmkTransform_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputFixedLandmarks=dict(argstr='--inputFixedLandmarks %s', ), inputMovingLandmarks=dict(argstr='--inputMovingLandmarks %s', ), inputMovingVolume=dict(argstr='--inputMovingVolume %s', ), @@ -28,10 +23,6 @@ def test_BRAINSLmkTransform_inputs(): argstr='--outputResampledVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSLmkTransform.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSMush.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSMush.py index 3b77fac8a5..9627258bcf 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSMush.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSMush.py @@ -20,11 +20,6 @@ def test_BRAINSMush_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputFirstVolume=dict(argstr='--inputFirstVolume %s', ), inputMaskVolume=dict(argstr='--inputMaskVolume %s', ), inputSecondVolume=dict(argstr='--inputSecondVolume %s', ), @@ -47,10 +42,6 @@ def test_BRAINSMush_inputs(): argstr='--seed %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upperThresholdFactor=dict(argstr='--upperThresholdFactor %f', ), upperThresholdFactorPre=dict(argstr='--upperThresholdFactorPre %f', ), ) diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSSnapShotWriter.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSSnapShotWriter.py index c99d85d0d0..1b803956e7 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSSnapShotWriter.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSSnapShotWriter.py @@ -10,11 +10,6 @@ def test_BRAINSSnapShotWriter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputBinaryVolumes=dict(argstr='--inputBinaryVolumes %s...', ), inputPlaneDirection=dict( argstr='--inputPlaneDirection %s', @@ -37,10 +32,6 @@ def test_BRAINSSnapShotWriter_inputs(): argstr='--outputFilename %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSSnapShotWriter.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTransformConvert.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTransformConvert.py index fd6e6f4925..c6d10736d7 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTransformConvert.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTransformConvert.py @@ -14,11 +14,6 @@ def test_BRAINSTransformConvert_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputTransform=dict(argstr='--inputTransform %s', ), outputPrecisionType=dict(argstr='--outputPrecisionType %s', ), outputTransform=dict( @@ -27,10 +22,6 @@ def test_BRAINSTransformConvert_inputs(): ), outputTransformType=dict(argstr='--outputTransformType %s', ), referenceVolume=dict(argstr='--referenceVolume %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSTransformConvert.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTrimForegroundInDirection.py b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTrimForegroundInDirection.py index 88e7c01a51..d2f3b74140 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTrimForegroundInDirection.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_BRAINSTrimForegroundInDirection.py @@ -14,11 +14,6 @@ def test_BRAINSTrimForegroundInDirection_inputs(): usedefault=True, ), headSizeLimit=dict(argstr='--headSizeLimit %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), otsuPercentileThreshold=dict(argstr='--otsuPercentileThreshold %f', ), @@ -26,10 +21,6 @@ def test_BRAINSTrimForegroundInDirection_inputs(): argstr='--outputVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BRAINSTrimForegroundInDirection.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_CleanUpOverlapLabels.py b/nipype/interfaces/semtools/utilities/tests/test_auto_CleanUpOverlapLabels.py index 5d1d684be6..936437886a 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_CleanUpOverlapLabels.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_CleanUpOverlapLabels.py @@ -10,20 +10,11 @@ def test_CleanUpOverlapLabels_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputBinaryVolumes=dict(argstr='--inputBinaryVolumes %s...', ), outputBinaryVolumes=dict( argstr='--outputBinaryVolumes %s...', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = CleanUpOverlapLabels.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_FindCenterOfBrain.py b/nipype/interfaces/semtools/utilities/tests/test_auto_FindCenterOfBrain.py index 1fce32d337..46924bf180 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_FindCenterOfBrain.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_FindCenterOfBrain.py @@ -40,19 +40,10 @@ def test_FindCenterOfBrain_inputs(): generateDebugImages=dict(argstr='--generateDebugImages ', ), headSizeEstimate=dict(argstr='--headSizeEstimate %f', ), headSizeLimit=dict(argstr='--headSizeLimit %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), imageMask=dict(argstr='--imageMask %s', ), inputVolume=dict(argstr='--inputVolume %s', ), maximize=dict(argstr='--maximize ', ), otsuPercentileThreshold=dict(argstr='--otsuPercentileThreshold %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = FindCenterOfBrain.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_GenerateLabelMapFromProbabilityMap.py b/nipype/interfaces/semtools/utilities/tests/test_auto_GenerateLabelMapFromProbabilityMap.py index f89675e964..9087d6667b 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_GenerateLabelMapFromProbabilityMap.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_GenerateLabelMapFromProbabilityMap.py @@ -10,21 +10,12 @@ def test_GenerateLabelMapFromProbabilityMap_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolumes=dict(argstr='--inputVolumes %s...', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), outputLabelVolume=dict( argstr='--outputLabelVolume %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = GenerateLabelMapFromProbabilityMap.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_ImageRegionPlotter.py b/nipype/interfaces/semtools/utilities/tests/test_auto_ImageRegionPlotter.py index e4e1e3fba1..f5372a240e 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_ImageRegionPlotter.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_ImageRegionPlotter.py @@ -10,11 +10,6 @@ def test_ImageRegionPlotter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputBinaryROIVolume=dict(argstr='--inputBinaryROIVolume %s', ), inputLabelVolume=dict(argstr='--inputLabelVolume %s', ), inputVolume1=dict(argstr='--inputVolume1 %s', ), @@ -22,10 +17,6 @@ def test_ImageRegionPlotter_inputs(): numberOfHistogramBins=dict(argstr='--numberOfHistogramBins %d', ), outputJointHistogramData=dict( argstr='--outputJointHistogramData %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), useIntensityForHistogram=dict(argstr='--useIntensityForHistogram ', ), useROIAUTO=dict(argstr='--useROIAUTO ', ), verbose=dict(argstr='--verbose ', ), diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_JointHistogram.py b/nipype/interfaces/semtools/utilities/tests/test_auto_JointHistogram.py index c332928bf9..daf6d5634f 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_JointHistogram.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_JointHistogram.py @@ -10,21 +10,12 @@ def test_JointHistogram_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMaskVolumeInXAxis=dict(argstr='--inputMaskVolumeInXAxis %s', ), inputMaskVolumeInYAxis=dict(argstr='--inputMaskVolumeInYAxis %s', ), inputVolumeInXAxis=dict(argstr='--inputVolumeInXAxis %s', ), inputVolumeInYAxis=dict(argstr='--inputVolumeInYAxis %s', ), outputJointHistogramImage=dict( argstr='--outputJointHistogramImage %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='--verbose ', ), ) inputs = JointHistogram.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_ShuffleVectorsModule.py b/nipype/interfaces/semtools/utilities/tests/test_auto_ShuffleVectorsModule.py index 3861388d43..7bea38e2f1 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_ShuffleVectorsModule.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_ShuffleVectorsModule.py @@ -10,21 +10,12 @@ def test_ShuffleVectorsModule_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVectorFileBaseName=dict(argstr='--inputVectorFileBaseName %s', ), outputVectorFileBaseName=dict( argstr='--outputVectorFileBaseName %s', hash_files=False, ), resampleProportion=dict(argstr='--resampleProportion %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ShuffleVectorsModule.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_fcsv_to_hdf5.py b/nipype/interfaces/semtools/utilities/tests/test_auto_fcsv_to_hdf5.py index 208c5b155c..32e6ce65cd 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_fcsv_to_hdf5.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_fcsv_to_hdf5.py @@ -10,11 +10,6 @@ def test_fcsv_to_hdf5_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), landmarkGlobPattern=dict(argstr='--landmarkGlobPattern %s', ), landmarkTypesList=dict(argstr='--landmarkTypesList %s', ), landmarksInformationFile=dict( @@ -26,10 +21,6 @@ def test_fcsv_to_hdf5_inputs(): hash_files=False, ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), versionID=dict(argstr='--versionID %s', ), ) inputs = fcsv_to_hdf5.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_insertMidACPCpoint.py b/nipype/interfaces/semtools/utilities/tests/test_auto_insertMidACPCpoint.py index b81339cca7..196b09b304 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_insertMidACPCpoint.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_insertMidACPCpoint.py @@ -10,20 +10,11 @@ def test_insertMidACPCpoint_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputLandmarkFile=dict(argstr='--inputLandmarkFile %s', ), outputLandmarkFile=dict( argstr='--outputLandmarkFile %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = insertMidACPCpoint.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationAligner.py b/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationAligner.py index 3f6fe802a4..151a2c7b3a 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationAligner.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationAligner.py @@ -10,20 +10,11 @@ def test_landmarksConstellationAligner_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputLandmarksPaired=dict(argstr='--inputLandmarksPaired %s', ), outputLandmarksPaired=dict( argstr='--outputLandmarksPaired %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = landmarksConstellationAligner.input_spec() diff --git a/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationWeights.py b/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationWeights.py index feb04c13a5..0bcd747d36 100644 --- a/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationWeights.py +++ b/nipype/interfaces/semtools/utilities/tests/test_auto_landmarksConstellationWeights.py @@ -11,21 +11,12 @@ def test_landmarksConstellationWeights_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputTemplateModel=dict(argstr='--inputTemplateModel %s', ), inputTrainingList=dict(argstr='--inputTrainingList %s', ), outputWeightsList=dict( argstr='--outputWeightsList %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = landmarksConstellationWeights.input_spec() diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIexport.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIexport.py index 49a1b8987a..c8d5df2ba2 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIexport.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIexport.py @@ -10,11 +10,6 @@ def test_DTIexport_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputTensor=dict( argstr='%s', position=-2, @@ -24,10 +19,6 @@ def test_DTIexport_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DTIexport.input_spec() diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIimport.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIimport.py index 3aa2e880ef..ec1d66bc0b 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIimport.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DTIimport.py @@ -10,11 +10,6 @@ def test_DTIimport_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputFile=dict( argstr='%s', position=-2, @@ -24,10 +19,6 @@ def test_DTIimport_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), testingmode=dict(argstr='--testingmode ', ), ) inputs = DTIimport.input_spec() diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIJointRicianLMMSEFilter.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIJointRicianLMMSEFilter.py index 4a39330c22..a2caa2f633 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIJointRicianLMMSEFilter.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIJointRicianLMMSEFilter.py @@ -11,11 +11,6 @@ def test_DWIJointRicianLMMSEFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -34,10 +29,6 @@ def test_DWIJointRicianLMMSEFilter_inputs(): argstr='--rf %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DWIJointRicianLMMSEFilter.input_spec() diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIRicianLMMSEFilter.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIRicianLMMSEFilter.py index 750668c266..7eff851562 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIRicianLMMSEFilter.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIRicianLMMSEFilter.py @@ -12,11 +12,6 @@ def test_DWIRicianLMMSEFilter_inputs(): usedefault=True, ), hrf=dict(argstr='--hrf %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -39,10 +34,6 @@ def test_DWIRicianLMMSEFilter_inputs(): argstr='--rf %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), uav=dict(argstr='--uav ', ), ) inputs = DWIRicianLMMSEFilter.input_spec() diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIToDTIEstimation.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIToDTIEstimation.py index 23917323a6..217f91edf0 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIToDTIEstimation.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DWIToDTIEstimation.py @@ -11,11 +11,6 @@ def test_DWIToDTIEstimation_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-3, @@ -32,10 +27,6 @@ def test_DWIToDTIEstimation_inputs(): position=-2, ), shiftNeg=dict(argstr='--shiftNeg ', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DWIToDTIEstimation.input_spec() diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionTensorScalarMeasurements.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionTensorScalarMeasurements.py index 4c862d7456..b75989c349 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionTensorScalarMeasurements.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionTensorScalarMeasurements.py @@ -11,11 +11,6 @@ def test_DiffusionTensorScalarMeasurements_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-3, @@ -25,10 +20,6 @@ def test_DiffusionTensorScalarMeasurements_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DiffusionTensorScalarMeasurements.input_spec() diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionWeightedVolumeMasking.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionWeightedVolumeMasking.py index 2576eae0ae..5e8c39a4ac 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionWeightedVolumeMasking.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_DiffusionWeightedVolumeMasking.py @@ -10,11 +10,6 @@ def test_DiffusionWeightedVolumeMasking_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-4, @@ -26,10 +21,6 @@ def test_DiffusionWeightedVolumeMasking_inputs(): position=-2, ), removeislands=dict(argstr='--removeislands ', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thresholdMask=dict( argstr='%s', hash_files=False, diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_ResampleDTIVolume.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_ResampleDTIVolume.py index 51c7a19ea4..30860d9da0 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_ResampleDTIVolume.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_ResampleDTIVolume.py @@ -22,11 +22,6 @@ def test_ResampleDTIVolume_inputs(): usedefault=True, ), hfieldtype=dict(argstr='--hfieldtype %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_center=dict(argstr='--image_center %s', ), inputVolume=dict( argstr='%s', @@ -52,10 +47,6 @@ def test_ResampleDTIVolume_inputs(): sep=',', ), spline_order=dict(argstr='--spline_order %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict(argstr='--transform %s', ), transform_matrix=dict( argstr='--transform_matrix %s', diff --git a/nipype/interfaces/slicer/diffusion/tests/test_auto_TractographyLabelMapSeeding.py b/nipype/interfaces/slicer/diffusion/tests/test_auto_TractographyLabelMapSeeding.py index f88a89a4ca..31fb7d5c0d 100644 --- a/nipype/interfaces/slicer/diffusion/tests/test_auto_TractographyLabelMapSeeding.py +++ b/nipype/interfaces/slicer/diffusion/tests/test_auto_TractographyLabelMapSeeding.py @@ -20,11 +20,6 @@ def test_TractographyLabelMapSeeding_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputroi=dict(argstr='--inputroi %s', ), integrationsteplength=dict(argstr='--integrationsteplength %f', ), label=dict(argstr='--label %d', ), @@ -40,10 +35,6 @@ def test_TractographyLabelMapSeeding_inputs(): stoppingcurvature=dict(argstr='--stoppingcurvature %f', ), stoppingmode=dict(argstr='--stoppingmode %s', ), stoppingvalue=dict(argstr='--stoppingvalue %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), useindexspace=dict(argstr='--useindexspace ', ), writetofile=dict(argstr='--writetofile ', ), ) diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_AddScalarVolumes.py b/nipype/interfaces/slicer/filtering/tests/test_auto_AddScalarVolumes.py index 4aee4b066c..9f2209c1eb 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_AddScalarVolumes.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_AddScalarVolumes.py @@ -10,11 +10,6 @@ def test_AddScalarVolumes_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume1=dict( argstr='%s', position=-3, @@ -29,10 +24,6 @@ def test_AddScalarVolumes_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = AddScalarVolumes.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_CastScalarVolume.py b/nipype/interfaces/slicer/filtering/tests/test_auto_CastScalarVolume.py index d78c17d8dc..a659aa47f7 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_CastScalarVolume.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_CastScalarVolume.py @@ -19,15 +19,6 @@ def test_CastScalarVolume_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), type=dict(argstr='--type %s', ), ) inputs = CastScalarVolume.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_CheckerBoardFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_CheckerBoardFilter.py index 209241a6d6..ae662cf2ba 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_CheckerBoardFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_CheckerBoardFilter.py @@ -14,11 +14,6 @@ def test_CheckerBoardFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume1=dict( argstr='%s', position=-3, @@ -32,10 +27,6 @@ def test_CheckerBoardFilter_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = CheckerBoardFilter.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_CurvatureAnisotropicDiffusion.py b/nipype/interfaces/slicer/filtering/tests/test_auto_CurvatureAnisotropicDiffusion.py index f1e6a09d21..5613eb0c4c 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_CurvatureAnisotropicDiffusion.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_CurvatureAnisotropicDiffusion.py @@ -11,11 +11,6 @@ def test_CurvatureAnisotropicDiffusion_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -26,10 +21,6 @@ def test_CurvatureAnisotropicDiffusion_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timeStep=dict(argstr='--timeStep %f', ), ) inputs = CurvatureAnisotropicDiffusion.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_ExtractSkeleton.py b/nipype/interfaces/slicer/filtering/tests/test_auto_ExtractSkeleton.py index a6554c6764..5db6c65c7e 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_ExtractSkeleton.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_ExtractSkeleton.py @@ -20,17 +20,8 @@ def test_ExtractSkeleton_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), numPoints=dict(argstr='--numPoints %d', ), pointsFile=dict(argstr='--pointsFile %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), type=dict(argstr='--type %s', ), ) inputs = ExtractSkeleton.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_GaussianBlurImageFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_GaussianBlurImageFilter.py index b1731925e4..ff46d6d308 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_GaussianBlurImageFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_GaussianBlurImageFilter.py @@ -10,11 +10,6 @@ def test_GaussianBlurImageFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -25,10 +20,6 @@ def test_GaussianBlurImageFilter_inputs(): position=-1, ), sigma=dict(argstr='--sigma %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = GaussianBlurImageFilter.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_GradientAnisotropicDiffusion.py b/nipype/interfaces/slicer/filtering/tests/test_auto_GradientAnisotropicDiffusion.py index fa80082fc0..8ec7dbb156 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_GradientAnisotropicDiffusion.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_GradientAnisotropicDiffusion.py @@ -11,11 +11,6 @@ def test_GradientAnisotropicDiffusion_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -26,10 +21,6 @@ def test_GradientAnisotropicDiffusion_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timeStep=dict(argstr='--timeStep %f', ), ) inputs = GradientAnisotropicDiffusion.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleFillHoleImageFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleFillHoleImageFilter.py index c1dabae00d..062a23c293 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleFillHoleImageFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleFillHoleImageFilter.py @@ -10,11 +10,6 @@ def test_GrayscaleFillHoleImageFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -24,10 +19,6 @@ def test_GrayscaleFillHoleImageFilter_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = GrayscaleFillHoleImageFilter.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleGrindPeakImageFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleGrindPeakImageFilter.py index 81ddf76174..edb6081ed3 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleGrindPeakImageFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_GrayscaleGrindPeakImageFilter.py @@ -10,11 +10,6 @@ def test_GrayscaleGrindPeakImageFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -24,10 +19,6 @@ def test_GrayscaleGrindPeakImageFilter_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = GrayscaleGrindPeakImageFilter.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_HistogramMatching.py b/nipype/interfaces/slicer/filtering/tests/test_auto_HistogramMatching.py index f654392b55..f73690586d 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_HistogramMatching.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_HistogramMatching.py @@ -10,11 +10,6 @@ def test_HistogramMatching_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-3, @@ -30,10 +25,6 @@ def test_HistogramMatching_inputs(): argstr='%s', position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='--threshold ', ), ) inputs = HistogramMatching.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_ImageLabelCombine.py b/nipype/interfaces/slicer/filtering/tests/test_auto_ImageLabelCombine.py index 3e351048a5..0bae22c342 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_ImageLabelCombine.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_ImageLabelCombine.py @@ -24,15 +24,6 @@ def test_ImageLabelCombine_inputs(): usedefault=True, ), first_overwrites=dict(argstr='--first_overwrites ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ImageLabelCombine.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_MaskScalarVolume.py b/nipype/interfaces/slicer/filtering/tests/test_auto_MaskScalarVolume.py index 55584e9e61..cd04072890 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_MaskScalarVolume.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_MaskScalarVolume.py @@ -23,17 +23,8 @@ def test_MaskScalarVolume_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), label=dict(argstr='--label %d', ), replace=dict(argstr='--replace %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MaskScalarVolume.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_MedianImageFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_MedianImageFilter.py index 3f82c7e79e..35bb9496c9 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_MedianImageFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_MedianImageFilter.py @@ -10,11 +10,6 @@ def test_MedianImageFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -28,10 +23,6 @@ def test_MedianImageFilter_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MedianImageFilter.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_MultiplyScalarVolumes.py b/nipype/interfaces/slicer/filtering/tests/test_auto_MultiplyScalarVolumes.py index ee4336c077..6590c4b133 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_MultiplyScalarVolumes.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_MultiplyScalarVolumes.py @@ -10,11 +10,6 @@ def test_MultiplyScalarVolumes_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume1=dict( argstr='%s', position=-3, @@ -29,10 +24,6 @@ def test_MultiplyScalarVolumes_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MultiplyScalarVolumes.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_N4ITKBiasFieldCorrection.py b/nipype/interfaces/slicer/filtering/tests/test_auto_N4ITKBiasFieldCorrection.py index 2a902aff66..c6ad0bf24d 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_N4ITKBiasFieldCorrection.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_N4ITKBiasFieldCorrection.py @@ -16,11 +16,6 @@ def test_N4ITKBiasFieldCorrection_inputs(): argstr='--histogramsharpening %s', sep=',', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputimage=dict(argstr='--inputimage %s', ), iterations=dict( argstr='--iterations %s', @@ -41,10 +36,6 @@ def test_N4ITKBiasFieldCorrection_inputs(): ), shrinkfactor=dict(argstr='--shrinkfactor %d', ), splinedistance=dict(argstr='--splinedistance %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), weightimage=dict(argstr='--weightimage %s', ), ) inputs = N4ITKBiasFieldCorrection.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_ResampleScalarVectorDWIVolume.py b/nipype/interfaces/slicer/filtering/tests/test_auto_ResampleScalarVectorDWIVolume.py index dabd9409ff..ebe34fd9b3 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_ResampleScalarVectorDWIVolume.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_ResampleScalarVectorDWIVolume.py @@ -21,11 +21,6 @@ def test_ResampleScalarVectorDWIVolume_inputs(): usedefault=True, ), hfieldtype=dict(argstr='--hfieldtype %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_center=dict(argstr='--image_center %s', ), inputVolume=dict( argstr='%s', @@ -51,10 +46,6 @@ def test_ResampleScalarVectorDWIVolume_inputs(): sep=',', ), spline_order=dict(argstr='--spline_order %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform=dict(argstr='--transform %s', ), transform_matrix=dict( argstr='--transform_matrix %s', diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_SubtractScalarVolumes.py b/nipype/interfaces/slicer/filtering/tests/test_auto_SubtractScalarVolumes.py index 00ccddf9d2..d62589881f 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_SubtractScalarVolumes.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_SubtractScalarVolumes.py @@ -10,11 +10,6 @@ def test_SubtractScalarVolumes_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume1=dict( argstr='%s', position=-3, @@ -29,10 +24,6 @@ def test_SubtractScalarVolumes_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SubtractScalarVolumes.input_spec() diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_ThresholdScalarVolume.py b/nipype/interfaces/slicer/filtering/tests/test_auto_ThresholdScalarVolume.py index 130e53b153..34de317104 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_ThresholdScalarVolume.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_ThresholdScalarVolume.py @@ -19,17 +19,8 @@ def test_ThresholdScalarVolume_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), lower=dict(argstr='--lower %d', ), outsidevalue=dict(argstr='--outsidevalue %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='--threshold %d', ), thresholdtype=dict(argstr='--thresholdtype %s', ), upper=dict(argstr='--upper %d', ), diff --git a/nipype/interfaces/slicer/filtering/tests/test_auto_VotingBinaryHoleFillingImageFilter.py b/nipype/interfaces/slicer/filtering/tests/test_auto_VotingBinaryHoleFillingImageFilter.py index c4a81c6676..8e7890de85 100644 --- a/nipype/interfaces/slicer/filtering/tests/test_auto_VotingBinaryHoleFillingImageFilter.py +++ b/nipype/interfaces/slicer/filtering/tests/test_auto_VotingBinaryHoleFillingImageFilter.py @@ -12,11 +12,6 @@ def test_VotingBinaryHoleFillingImageFilter_inputs(): usedefault=True, ), foreground=dict(argstr='--foreground %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -31,10 +26,6 @@ def test_VotingBinaryHoleFillingImageFilter_inputs(): argstr='--radius %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = VotingBinaryHoleFillingImageFilter.input_spec() diff --git a/nipype/interfaces/slicer/legacy/diffusion/tests/test_auto_DWIUnbiasedNonLocalMeansFilter.py b/nipype/interfaces/slicer/legacy/diffusion/tests/test_auto_DWIUnbiasedNonLocalMeansFilter.py index d192809a58..0e25ffad9a 100644 --- a/nipype/interfaces/slicer/legacy/diffusion/tests/test_auto_DWIUnbiasedNonLocalMeansFilter.py +++ b/nipype/interfaces/slicer/legacy/diffusion/tests/test_auto_DWIUnbiasedNonLocalMeansFilter.py @@ -11,11 +11,6 @@ def test_DWIUnbiasedNonLocalMeansFilter_inputs(): usedefault=True, ), hp=dict(argstr='--hp %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -38,10 +33,6 @@ def test_DWIUnbiasedNonLocalMeansFilter_inputs(): argstr='--rs %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = DWIUnbiasedNonLocalMeansFilter.input_spec() diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_AffineRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_AffineRegistration.py index e26b1a958e..949cdc7f61 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_AffineRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_AffineRegistration.py @@ -20,11 +20,6 @@ def test_AffineRegistration_inputs(): ), fixedsmoothingfactor=dict(argstr='--fixedsmoothingfactor %d', ), histogrambins=dict(argstr='--histogrambins %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialtransform=dict(argstr='--initialtransform %s', ), iterations=dict(argstr='--iterations %d', ), movingsmoothingfactor=dict(argstr='--movingsmoothingfactor %d', ), @@ -37,10 +32,6 @@ def test_AffineRegistration_inputs(): hash_files=False, ), spatialsamples=dict(argstr='--spatialsamples %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), translationscale=dict(argstr='--translationscale %f', ), ) inputs = AffineRegistration.input_spec() diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineDeformableRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineDeformableRegistration.py index 2fddc2c40a..17339f8859 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineDeformableRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineDeformableRegistration.py @@ -22,11 +22,6 @@ def test_BSplineDeformableRegistration_inputs(): ), gridSize=dict(argstr='--gridSize %d', ), histogrambins=dict(argstr='--histogrambins %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialtransform=dict(argstr='--initialtransform %s', ), iterations=dict(argstr='--iterations %d', ), maximumDeformation=dict(argstr='--maximumDeformation %f', ), @@ -43,10 +38,6 @@ def test_BSplineDeformableRegistration_inputs(): hash_files=False, ), spatialsamples=dict(argstr='--spatialsamples %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = BSplineDeformableRegistration.input_spec() diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineToDeformationField.py b/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineToDeformationField.py index 24261cb6a7..8335515c13 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineToDeformationField.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_BSplineToDeformationField.py @@ -14,16 +14,7 @@ def test_BSplineToDeformationField_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), refImage=dict(argstr='--refImage %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), tfm=dict(argstr='--tfm %s', ), ) inputs = BSplineToDeformationField.input_spec() diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_ExpertAutomatedRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_ExpertAutomatedRegistration.py index bc0998f3ee..7fa8b77d63 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_ExpertAutomatedRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_ExpertAutomatedRegistration.py @@ -25,11 +25,6 @@ def test_ExpertAutomatedRegistration_inputs(): ), fixedImageMask=dict(argstr='--fixedImageMask %s', ), fixedLandmarks=dict(argstr='--fixedLandmarks %s...', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialization=dict(argstr='--initialization %s', ), interpolation=dict(argstr='--interpolation %s', ), loadTransform=dict(argstr='--loadTransform %s', ), @@ -54,10 +49,6 @@ def test_ExpertAutomatedRegistration_inputs(): argstr='--saveTransform %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbosityLevel=dict(argstr='--verbosityLevel %s', ), ) inputs = ExpertAutomatedRegistration.input_spec() diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_LinearRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_LinearRegistration.py index 1f7f0c6b5d..a55432f9b0 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_LinearRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_LinearRegistration.py @@ -20,11 +20,6 @@ def test_LinearRegistration_inputs(): ), fixedsmoothingfactor=dict(argstr='--fixedsmoothingfactor %d', ), histogrambins=dict(argstr='--histogrambins %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialtransform=dict(argstr='--initialtransform %s', ), iterations=dict( argstr='--iterations %s', @@ -44,10 +39,6 @@ def test_LinearRegistration_inputs(): hash_files=False, ), spatialsamples=dict(argstr='--spatialsamples %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), translationscale=dict(argstr='--translationscale %f', ), ) inputs = LinearRegistration.input_spec() diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_MultiResolutionAffineRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_MultiResolutionAffineRegistration.py index 96ba92f7f2..7903fd1d5c 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_MultiResolutionAffineRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_MultiResolutionAffineRegistration.py @@ -16,11 +16,6 @@ def test_MultiResolutionAffineRegistration_inputs(): ), fixedImageMask=dict(argstr='--fixedImageMask %s', ), fixedImageROI=dict(argstr='--fixedImageROI %s', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), metricTolerance=dict(argstr='--metricTolerance %f', ), movingImage=dict( argstr='%s', @@ -38,10 +33,6 @@ def test_MultiResolutionAffineRegistration_inputs(): ), stepSize=dict(argstr='--stepSize %f', ), stepTolerance=dict(argstr='--stepTolerance %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MultiResolutionAffineRegistration.input_spec() diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdImageFilter.py b/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdImageFilter.py index 28921d2c6e..a1af6c71b3 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdImageFilter.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdImageFilter.py @@ -10,11 +10,6 @@ def test_OtsuThresholdImageFilter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -27,10 +22,6 @@ def test_OtsuThresholdImageFilter_inputs(): position=-1, ), outsideValue=dict(argstr='--outsideValue %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = OtsuThresholdImageFilter.input_spec() diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdSegmentation.py b/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdSegmentation.py index 99967953eb..02beeee464 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdSegmentation.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_OtsuThresholdSegmentation.py @@ -12,11 +12,6 @@ def test_OtsuThresholdSegmentation_inputs(): usedefault=True, ), faceConnected=dict(argstr='--faceConnected ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -28,10 +23,6 @@ def test_OtsuThresholdSegmentation_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = OtsuThresholdSegmentation.input_spec() diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_ResampleScalarVolume.py b/nipype/interfaces/slicer/legacy/tests/test_auto_ResampleScalarVolume.py index b8bbd66f71..baa698246c 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_ResampleScalarVolume.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_ResampleScalarVolume.py @@ -19,20 +19,11 @@ def test_ResampleScalarVolume_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), interpolation=dict(argstr='--interpolation %s', ), spacing=dict( argstr='--spacing %s', sep=',', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ResampleScalarVolume.input_spec() diff --git a/nipype/interfaces/slicer/legacy/tests/test_auto_RigidRegistration.py b/nipype/interfaces/slicer/legacy/tests/test_auto_RigidRegistration.py index 2f1d291a0e..6c2a0eb072 100644 --- a/nipype/interfaces/slicer/legacy/tests/test_auto_RigidRegistration.py +++ b/nipype/interfaces/slicer/legacy/tests/test_auto_RigidRegistration.py @@ -20,11 +20,6 @@ def test_RigidRegistration_inputs(): ), fixedsmoothingfactor=dict(argstr='--fixedsmoothingfactor %d', ), histogrambins=dict(argstr='--histogrambins %d', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialtransform=dict(argstr='--initialtransform %s', ), iterations=dict( argstr='--iterations %s', @@ -44,10 +39,6 @@ def test_RigidRegistration_inputs(): hash_files=False, ), spatialsamples=dict(argstr='--spatialsamples %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), testingmode=dict(argstr='--testingmode ', ), translationscale=dict(argstr='--translationscale %f', ), ) diff --git a/nipype/interfaces/slicer/quantification/tests/test_auto_IntensityDifferenceMetric.py b/nipype/interfaces/slicer/quantification/tests/test_auto_IntensityDifferenceMetric.py index 638ce652a2..e46f046add 100644 --- a/nipype/interfaces/slicer/quantification/tests/test_auto_IntensityDifferenceMetric.py +++ b/nipype/interfaces/slicer/quantification/tests/test_auto_IntensityDifferenceMetric.py @@ -23,11 +23,6 @@ def test_IntensityDifferenceMetric_inputs(): argstr='%s', position=-2, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), outputVolume=dict( argstr='%s', hash_files=False, @@ -38,10 +33,6 @@ def test_IntensityDifferenceMetric_inputs(): hash_files=False, ), sensitivityThreshold=dict(argstr='--sensitivityThreshold %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = IntensityDifferenceMetric.input_spec() diff --git a/nipype/interfaces/slicer/quantification/tests/test_auto_PETStandardUptakeValueComputation.py b/nipype/interfaces/slicer/quantification/tests/test_auto_PETStandardUptakeValueComputation.py index 622d3fa15d..61141f65db 100644 --- a/nipype/interfaces/slicer/quantification/tests/test_auto_PETStandardUptakeValueComputation.py +++ b/nipype/interfaces/slicer/quantification/tests/test_auto_PETStandardUptakeValueComputation.py @@ -20,18 +20,9 @@ def test_PETStandardUptakeValueComputation_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), labelMap=dict(argstr='--labelMap %s', ), petDICOMPath=dict(argstr='--petDICOMPath %s', ), petVolume=dict(argstr='--petVolume %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = PETStandardUptakeValueComputation.input_spec() diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_ACPCTransform.py b/nipype/interfaces/slicer/registration/tests/test_auto_ACPCTransform.py index dec0f9ebd4..454e290102 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_ACPCTransform.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_ACPCTransform.py @@ -12,20 +12,11 @@ def test_ACPCTransform_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), midline=dict(argstr='--midline %s...', ), outputTransform=dict( argstr='--outputTransform %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ACPCTransform.input_spec() diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSDemonWarp.py b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSDemonWarp.py index 535122ef38..c631f9b96e 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSDemonWarp.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSDemonWarp.py @@ -24,11 +24,6 @@ def test_BRAINSDemonWarp_inputs(): gradient_type=dict(argstr='--gradient_type %s', ), gui=dict(argstr='--gui ', ), histogramMatch=dict(argstr='--histogramMatch ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initializeWithDisplacementField=dict( argstr='--initializeWithDisplacementField %s', ), initializeWithTransform=dict(argstr='--initializeWithTransform %s', ), @@ -86,10 +81,6 @@ def test_BRAINSDemonWarp_inputs(): ), smoothDisplacementFieldSigma=dict( argstr='--smoothDisplacementFieldSigma %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upFieldSmoothing=dict(argstr='--upFieldSmoothing %f', ), upperThresholdForBOBF=dict(argstr='--upperThresholdForBOBF %d', ), use_vanilla_dem=dict(argstr='--use_vanilla_dem ', ), diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSFit.py b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSFit.py index 970f335d21..bb62633d94 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSFit.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSFit.py @@ -34,11 +34,6 @@ def test_BRAINSFit_inputs(): forceMINumberOfThreads=dict(argstr='--forceMINumberOfThreads %d', ), gui=dict(argstr='--gui ', ), histogramMatch=dict(argstr='--histogramMatch ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initialTransform=dict(argstr='--initialTransform %s', ), initializeTransformMode=dict(argstr='--initializeTransformMode %s', ), interpolationMode=dict(argstr='--interpolationMode %s', ), @@ -107,10 +102,6 @@ def test_BRAINSFit_inputs(): argstr='--strippedOutputTransform %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformType=dict( argstr='--transformType %s', sep=',', diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSResample.py b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSResample.py index 5a6e0beefe..98ec5f4ff3 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSResample.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_BRAINSResample.py @@ -16,11 +16,6 @@ def test_BRAINSResample_inputs(): argstr='--gridSpacing %s', sep=',', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), interpolationMode=dict(argstr='--interpolationMode %s', ), inverseTransform=dict(argstr='--inverseTransform ', ), @@ -31,10 +26,6 @@ def test_BRAINSResample_inputs(): ), pixelType=dict(argstr='--pixelType %s', ), referenceVolume=dict(argstr='--referenceVolume %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), warpTransform=dict(argstr='--warpTransform %s', ), ) inputs = BRAINSResample.input_spec() diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_FiducialRegistration.py b/nipype/interfaces/slicer/registration/tests/test_auto_FiducialRegistration.py index 67c009c8c2..36d42fe8df 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_FiducialRegistration.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_FiducialRegistration.py @@ -11,11 +11,6 @@ def test_FiducialRegistration_inputs(): usedefault=True, ), fixedLandmarks=dict(argstr='--fixedLandmarks %s...', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), movingLandmarks=dict(argstr='--movingLandmarks %s...', ), outputMessage=dict(argstr='--outputMessage %s', ), rms=dict(argstr='--rms %f', ), @@ -23,10 +18,6 @@ def test_FiducialRegistration_inputs(): argstr='--saveTransform %s', hash_files=False, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transformType=dict(argstr='--transformType %s', ), ) inputs = FiducialRegistration.input_spec() diff --git a/nipype/interfaces/slicer/registration/tests/test_auto_VBRAINSDemonWarp.py b/nipype/interfaces/slicer/registration/tests/test_auto_VBRAINSDemonWarp.py index d4e7c12a7f..b3255da1d3 100644 --- a/nipype/interfaces/slicer/registration/tests/test_auto_VBRAINSDemonWarp.py +++ b/nipype/interfaces/slicer/registration/tests/test_auto_VBRAINSDemonWarp.py @@ -24,11 +24,6 @@ def test_VBRAINSDemonWarp_inputs(): gradient_type=dict(argstr='--gradient_type %s', ), gui=dict(argstr='--gui ', ), histogramMatch=dict(argstr='--histogramMatch ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), initializeWithDisplacementField=dict( argstr='--initializeWithDisplacementField %s', ), initializeWithTransform=dict(argstr='--initializeWithTransform %s', ), @@ -86,10 +81,6 @@ def test_VBRAINSDemonWarp_inputs(): ), smoothDisplacementFieldSigma=dict( argstr='--smoothDisplacementFieldSigma %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), upFieldSmoothing=dict(argstr='--upFieldSmoothing %f', ), upperThresholdForBOBF=dict(argstr='--upperThresholdForBOBF %d', ), use_vanilla_dem=dict(argstr='--use_vanilla_dem ', ), diff --git a/nipype/interfaces/slicer/segmentation/tests/test_auto_BRAINSROIAuto.py b/nipype/interfaces/slicer/segmentation/tests/test_auto_BRAINSROIAuto.py index 50a99b523d..89863fb730 100644 --- a/nipype/interfaces/slicer/segmentation/tests/test_auto_BRAINSROIAuto.py +++ b/nipype/interfaces/slicer/segmentation/tests/test_auto_BRAINSROIAuto.py @@ -12,11 +12,6 @@ def test_BRAINSROIAuto_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict(argstr='--inputVolume %s', ), numberOfThreads=dict(argstr='--numberOfThreads %d', ), otsuPercentileThreshold=dict(argstr='--otsuPercentileThreshold %f', ), @@ -29,10 +24,6 @@ def test_BRAINSROIAuto_inputs(): hash_files=False, ), outputVolumePixelType=dict(argstr='--outputVolumePixelType %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), thresholdCorrectionFactor=dict( argstr='--thresholdCorrectionFactor %f', ), ) diff --git a/nipype/interfaces/slicer/segmentation/tests/test_auto_EMSegmentCommandLine.py b/nipype/interfaces/slicer/segmentation/tests/test_auto_EMSegmentCommandLine.py index 65fba20d24..09b0b1300f 100644 --- a/nipype/interfaces/slicer/segmentation/tests/test_auto_EMSegmentCommandLine.py +++ b/nipype/interfaces/slicer/segmentation/tests/test_auto_EMSegmentCommandLine.py @@ -20,11 +20,6 @@ def test_EMSegmentCommandLine_inputs(): argstr='--generateEmptyMRMLSceneAndQuit %s', hash_files=False, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), intermediateResultsDirectory=dict( argstr='--intermediateResultsDirectory %s', ), keepTempFiles=dict(argstr='--keepTempFiles ', ), @@ -49,10 +44,6 @@ def test_EMSegmentCommandLine_inputs(): targetVolumeFileNames=dict(argstr='--targetVolumeFileNames %s...', ), taskPreProcessingSetting=dict( argstr='--taskPreProcessingSetting %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict(argstr='--verbose ', ), ) inputs = EMSegmentCommandLine.input_spec() diff --git a/nipype/interfaces/slicer/segmentation/tests/test_auto_RobustStatisticsSegmenter.py b/nipype/interfaces/slicer/segmentation/tests/test_auto_RobustStatisticsSegmenter.py index 1e0afc9dad..ed46177df0 100644 --- a/nipype/interfaces/slicer/segmentation/tests/test_auto_RobustStatisticsSegmenter.py +++ b/nipype/interfaces/slicer/segmentation/tests/test_auto_RobustStatisticsSegmenter.py @@ -12,11 +12,6 @@ def test_RobustStatisticsSegmenter_inputs(): usedefault=True, ), expectedVolume=dict(argstr='--expectedVolume %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), intensityHomogeneity=dict(argstr='--intensityHomogeneity %f', ), labelImageFileName=dict( argstr='%s', @@ -33,10 +28,6 @@ def test_RobustStatisticsSegmenter_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = RobustStatisticsSegmenter.input_spec() diff --git a/nipype/interfaces/slicer/segmentation/tests/test_auto_SimpleRegionGrowingSegmentation.py b/nipype/interfaces/slicer/segmentation/tests/test_auto_SimpleRegionGrowingSegmentation.py index 0eb6b1b5a9..3c5e2124d0 100644 --- a/nipype/interfaces/slicer/segmentation/tests/test_auto_SimpleRegionGrowingSegmentation.py +++ b/nipype/interfaces/slicer/segmentation/tests/test_auto_SimpleRegionGrowingSegmentation.py @@ -10,11 +10,6 @@ def test_SimpleRegionGrowingSegmentation_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -30,10 +25,6 @@ def test_SimpleRegionGrowingSegmentation_inputs(): ), seed=dict(argstr='--seed %s...', ), smoothingIterations=dict(argstr='--smoothingIterations %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), timestep=dict(argstr='--timestep %f', ), ) inputs = SimpleRegionGrowingSegmentation.input_spec() diff --git a/nipype/interfaces/slicer/tests/test_auto_DicomToNrrdConverter.py b/nipype/interfaces/slicer/tests/test_auto_DicomToNrrdConverter.py index 6b1e441720..2997e805f9 100644 --- a/nipype/interfaces/slicer/tests/test_auto_DicomToNrrdConverter.py +++ b/nipype/interfaces/slicer/tests/test_auto_DicomToNrrdConverter.py @@ -10,11 +10,6 @@ def test_DicomToNrrdConverter_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputDicomDirectory=dict(argstr='--inputDicomDirectory %s', ), outputDirectory=dict( argstr='--outputDirectory %s', @@ -22,10 +17,6 @@ def test_DicomToNrrdConverter_inputs(): ), outputVolume=dict(argstr='--outputVolume %s', ), smallGradientThreshold=dict(argstr='--smallGradientThreshold %f', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), useBMatrixGradientDirections=dict( argstr='--useBMatrixGradientDirections ', ), useIdentityMeaseurementFrame=dict( diff --git a/nipype/interfaces/slicer/tests/test_auto_EMSegmentTransformToNewFormat.py b/nipype/interfaces/slicer/tests/test_auto_EMSegmentTransformToNewFormat.py index 196d0606d8..279d68e0ab 100644 --- a/nipype/interfaces/slicer/tests/test_auto_EMSegmentTransformToNewFormat.py +++ b/nipype/interfaces/slicer/tests/test_auto_EMSegmentTransformToNewFormat.py @@ -10,21 +10,12 @@ def test_EMSegmentTransformToNewFormat_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputMRMLFileName=dict(argstr='--inputMRMLFileName %s', ), outputMRMLFileName=dict( argstr='--outputMRMLFileName %s', hash_files=False, ), templateFlag=dict(argstr='--templateFlag ', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = EMSegmentTransformToNewFormat.input_spec() diff --git a/nipype/interfaces/slicer/tests/test_auto_GrayscaleModelMaker.py b/nipype/interfaces/slicer/tests/test_auto_GrayscaleModelMaker.py index 77019093c4..7ad8cac8e9 100644 --- a/nipype/interfaces/slicer/tests/test_auto_GrayscaleModelMaker.py +++ b/nipype/interfaces/slicer/tests/test_auto_GrayscaleModelMaker.py @@ -20,19 +20,10 @@ def test_GrayscaleModelMaker_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), name=dict(argstr='--name %s', ), pointnormals=dict(argstr='--pointnormals ', ), smooth=dict(argstr='--smooth %d', ), splitnormals=dict(argstr='--splitnormals ', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), threshold=dict(argstr='--threshold %f', ), ) inputs = GrayscaleModelMaker.input_spec() diff --git a/nipype/interfaces/slicer/tests/test_auto_LabelMapSmoothing.py b/nipype/interfaces/slicer/tests/test_auto_LabelMapSmoothing.py index a3e863d165..bb3780495b 100644 --- a/nipype/interfaces/slicer/tests/test_auto_LabelMapSmoothing.py +++ b/nipype/interfaces/slicer/tests/test_auto_LabelMapSmoothing.py @@ -11,11 +11,6 @@ def test_LabelMapSmoothing_inputs(): usedefault=True, ), gaussianSigma=dict(argstr='--gaussianSigma %f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume=dict( argstr='%s', position=-2, @@ -28,10 +23,6 @@ def test_LabelMapSmoothing_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = LabelMapSmoothing.input_spec() diff --git a/nipype/interfaces/slicer/tests/test_auto_MergeModels.py b/nipype/interfaces/slicer/tests/test_auto_MergeModels.py index 6b2cee1e65..6453957a79 100644 --- a/nipype/interfaces/slicer/tests/test_auto_MergeModels.py +++ b/nipype/interfaces/slicer/tests/test_auto_MergeModels.py @@ -23,15 +23,6 @@ def test_MergeModels_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = MergeModels.input_spec() diff --git a/nipype/interfaces/slicer/tests/test_auto_ModelMaker.py b/nipype/interfaces/slicer/tests/test_auto_ModelMaker.py index 008e70bc31..ed182137cf 100644 --- a/nipype/interfaces/slicer/tests/test_auto_ModelMaker.py +++ b/nipype/interfaces/slicer/tests/test_auto_ModelMaker.py @@ -20,11 +20,6 @@ def test_ModelMaker_inputs(): ), filtertype=dict(argstr='--filtertype %s', ), generateAll=dict(argstr='--generateAll ', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), jointsmooth=dict(argstr='--jointsmooth ', ), labels=dict( argstr='--labels %s', @@ -42,10 +37,6 @@ def test_ModelMaker_inputs(): smooth=dict(argstr='--smooth %d', ), splitnormals=dict(argstr='--splitnormals ', ), start=dict(argstr='--start %d', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ModelMaker.input_spec() diff --git a/nipype/interfaces/slicer/tests/test_auto_ModelToLabelMap.py b/nipype/interfaces/slicer/tests/test_auto_ModelToLabelMap.py index 5537cc559f..efd11f1040 100644 --- a/nipype/interfaces/slicer/tests/test_auto_ModelToLabelMap.py +++ b/nipype/interfaces/slicer/tests/test_auto_ModelToLabelMap.py @@ -20,19 +20,10 @@ def test_ModelToLabelMap_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), surface=dict( argstr='%s', position=-2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ModelToLabelMap.input_spec() diff --git a/nipype/interfaces/slicer/tests/test_auto_OrientScalarVolume.py b/nipype/interfaces/slicer/tests/test_auto_OrientScalarVolume.py index 62db6e57e2..f3d1908cd0 100644 --- a/nipype/interfaces/slicer/tests/test_auto_OrientScalarVolume.py +++ b/nipype/interfaces/slicer/tests/test_auto_OrientScalarVolume.py @@ -10,11 +10,6 @@ def test_OrientScalarVolume_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inputVolume1=dict( argstr='%s', position=-2, @@ -25,10 +20,6 @@ def test_OrientScalarVolume_inputs(): hash_files=False, position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = OrientScalarVolume.input_spec() diff --git a/nipype/interfaces/slicer/tests/test_auto_ProbeVolumeWithModel.py b/nipype/interfaces/slicer/tests/test_auto_ProbeVolumeWithModel.py index f15fda4e9a..32a2fc2139 100644 --- a/nipype/interfaces/slicer/tests/test_auto_ProbeVolumeWithModel.py +++ b/nipype/interfaces/slicer/tests/test_auto_ProbeVolumeWithModel.py @@ -23,15 +23,6 @@ def test_ProbeVolumeWithModel_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = ProbeVolumeWithModel.input_spec() diff --git a/nipype/interfaces/slicer/tests/test_auto_SlicerCommandLine.py b/nipype/interfaces/slicer/tests/test_auto_SlicerCommandLine.py index 3f29a03307..b0e1e2c3b0 100644 --- a/nipype/interfaces/slicer/tests/test_auto_SlicerCommandLine.py +++ b/nipype/interfaces/slicer/tests/test_auto_SlicerCommandLine.py @@ -10,15 +10,6 @@ def test_SlicerCommandLine_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SlicerCommandLine.input_spec() diff --git a/nipype/interfaces/spm/tests/test_auto_Analyze2nii.py b/nipype/interfaces/spm/tests/test_auto_Analyze2nii.py index 18dc844d9e..1b1aa6edcd 100644 --- a/nipype/interfaces/spm/tests/test_auto_Analyze2nii.py +++ b/nipype/interfaces/spm/tests/test_auto_Analyze2nii.py @@ -6,11 +6,6 @@ def test_Analyze2nii_inputs(): input_map = dict( analyze_file=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), paths=dict(), @@ -27,11 +22,6 @@ def test_Analyze2nii_inputs(): assert getattr(inputs.traits()[key], metakey) == value def test_Analyze2nii_outputs(): output_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), nifti_file=dict(), diff --git a/nipype/interfaces/spm/tests/test_auto_ApplyDeformations.py b/nipype/interfaces/spm/tests/test_auto_ApplyDeformations.py index 07e957ae3f..bbc925ec9e 100644 --- a/nipype/interfaces/spm/tests/test_auto_ApplyDeformations.py +++ b/nipype/interfaces/spm/tests/test_auto_ApplyDeformations.py @@ -9,11 +9,6 @@ def test_ApplyDeformations_inputs(): field='comp{1}.def', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( field='fnames', mandatory=True, diff --git a/nipype/interfaces/spm/tests/test_auto_ApplyInverseDeformation.py b/nipype/interfaces/spm/tests/test_auto_ApplyInverseDeformation.py index ba0f7d9065..d1c35dbcd2 100644 --- a/nipype/interfaces/spm/tests/test_auto_ApplyInverseDeformation.py +++ b/nipype/interfaces/spm/tests/test_auto_ApplyInverseDeformation.py @@ -14,11 +14,6 @@ def test_ApplyInverseDeformation_inputs(): field='comp{1}.inv.comp{1}.def', xor=['deformation'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( field='fnames', mandatory=True, diff --git a/nipype/interfaces/spm/tests/test_auto_ApplyTransform.py b/nipype/interfaces/spm/tests/test_auto_ApplyTransform.py index 1cec8743e8..a686e95485 100644 --- a/nipype/interfaces/spm/tests/test_auto_ApplyTransform.py +++ b/nipype/interfaces/spm/tests/test_auto_ApplyTransform.py @@ -5,11 +5,6 @@ def test_ApplyTransform_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( copyfile=True, mandatory=True, diff --git a/nipype/interfaces/spm/tests/test_auto_CalcCoregAffine.py b/nipype/interfaces/spm/tests/test_auto_CalcCoregAffine.py index 80d05cf65e..69695ca7b5 100644 --- a/nipype/interfaces/spm/tests/test_auto_CalcCoregAffine.py +++ b/nipype/interfaces/spm/tests/test_auto_CalcCoregAffine.py @@ -5,11 +5,6 @@ def test_CalcCoregAffine_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), invmat=dict(), mat=dict(), matlab_cmd=dict(), diff --git a/nipype/interfaces/spm/tests/test_auto_Coregister.py b/nipype/interfaces/spm/tests/test_auto_Coregister.py index 0323ee1223..957a2c84a9 100644 --- a/nipype/interfaces/spm/tests/test_auto_Coregister.py +++ b/nipype/interfaces/spm/tests/test_auto_Coregister.py @@ -11,11 +11,6 @@ def test_Coregister_inputs(): ), cost_function=dict(field='eoptions.cost_fun', ), fwhm=dict(field='eoptions.fwhm', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), jobtype=dict(usedefault=True, ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), diff --git a/nipype/interfaces/spm/tests/test_auto_CreateWarped.py b/nipype/interfaces/spm/tests/test_auto_CreateWarped.py index 33e7136635..dd98d30e37 100644 --- a/nipype/interfaces/spm/tests/test_auto_CreateWarped.py +++ b/nipype/interfaces/spm/tests/test_auto_CreateWarped.py @@ -10,11 +10,6 @@ def test_CreateWarped_inputs(): field='crt_warped.flowfields', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_files=dict( copyfile=False, field='crt_warped.images', diff --git a/nipype/interfaces/spm/tests/test_auto_DARTEL.py b/nipype/interfaces/spm/tests/test_auto_DARTEL.py index b5b6ef1c28..cc1b9eee1b 100644 --- a/nipype/interfaces/spm/tests/test_auto_DARTEL.py +++ b/nipype/interfaces/spm/tests/test_auto_DARTEL.py @@ -5,11 +5,6 @@ def test_DARTEL_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_files=dict( copyfile=False, field='warp.images', diff --git a/nipype/interfaces/spm/tests/test_auto_DARTELNorm2MNI.py b/nipype/interfaces/spm/tests/test_auto_DARTELNorm2MNI.py index 66d77ce30a..d25bde2e5d 100644 --- a/nipype/interfaces/spm/tests/test_auto_DARTELNorm2MNI.py +++ b/nipype/interfaces/spm/tests/test_auto_DARTELNorm2MNI.py @@ -16,11 +16,6 @@ def test_DARTELNorm2MNI_inputs(): mandatory=True, ), fwhm=dict(field='mni_norm.fwhm', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), modulate=dict(field='mni_norm.preserve', ), diff --git a/nipype/interfaces/spm/tests/test_auto_DicomImport.py b/nipype/interfaces/spm/tests/test_auto_DicomImport.py index 81e3aa5c21..fec62ddeeb 100644 --- a/nipype/interfaces/spm/tests/test_auto_DicomImport.py +++ b/nipype/interfaces/spm/tests/test_auto_DicomImport.py @@ -13,11 +13,6 @@ def test_DicomImport_inputs(): field='convopts.icedims', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( field='data', mandatory=True, diff --git a/nipype/interfaces/spm/tests/test_auto_EstimateContrast.py b/nipype/interfaces/spm/tests/test_auto_EstimateContrast.py index a7fc4a897c..bc9bb9006e 100644 --- a/nipype/interfaces/spm/tests/test_auto_EstimateContrast.py +++ b/nipype/interfaces/spm/tests/test_auto_EstimateContrast.py @@ -11,11 +11,6 @@ def test_EstimateContrast_inputs(): ), contrasts=dict(mandatory=True, ), group_contrast=dict(xor=['use_derivs'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), paths=dict(), diff --git a/nipype/interfaces/spm/tests/test_auto_EstimateModel.py b/nipype/interfaces/spm/tests/test_auto_EstimateModel.py index 7d27d5454a..05f511a0bd 100644 --- a/nipype/interfaces/spm/tests/test_auto_EstimateModel.py +++ b/nipype/interfaces/spm/tests/test_auto_EstimateModel.py @@ -10,11 +10,6 @@ def test_EstimateModel_inputs(): mandatory=True, ), flags=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), paths=dict(), diff --git a/nipype/interfaces/spm/tests/test_auto_FactorialDesign.py b/nipype/interfaces/spm/tests/test_auto_FactorialDesign.py index 66e282b97e..38d2b1c6fb 100644 --- a/nipype/interfaces/spm/tests/test_auto_FactorialDesign.py +++ b/nipype/interfaces/spm/tests/test_auto_FactorialDesign.py @@ -20,11 +20,6 @@ def test_FactorialDesign_inputs(): xor=['global_calc_mean', 'global_calc_omit'], ), global_normalization=dict(field='globalm.glonorm', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), no_grand_mean_scaling=dict(field='globalm.gmsca.gmsca_no', ), diff --git a/nipype/interfaces/spm/tests/test_auto_FieldMap.py b/nipype/interfaces/spm/tests/test_auto_FieldMap.py index b185238a05..43fbbcb8f4 100644 --- a/nipype/interfaces/spm/tests/test_auto_FieldMap.py +++ b/nipype/interfaces/spm/tests/test_auto_FieldMap.py @@ -26,11 +26,6 @@ def test_FieldMap_inputs(): field='subj.defaults.defaultsval.epifm', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), jacobian_modulation=dict( field='subj.defaults.defaultsval.ajm', usedefault=True, diff --git a/nipype/interfaces/spm/tests/test_auto_Level1Design.py b/nipype/interfaces/spm/tests/test_auto_Level1Design.py index 75ca24a3cc..7ad8ab8195 100644 --- a/nipype/interfaces/spm/tests/test_auto_Level1Design.py +++ b/nipype/interfaces/spm/tests/test_auto_Level1Design.py @@ -11,11 +11,6 @@ def test_Level1Design_inputs(): ), factor_info=dict(field='fact', ), global_intensity_normalization=dict(field='global', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), interscan_interval=dict( field='timing.RT', mandatory=True, diff --git a/nipype/interfaces/spm/tests/test_auto_MultipleRegressionDesign.py b/nipype/interfaces/spm/tests/test_auto_MultipleRegressionDesign.py index f16dcd7e64..26957f2fbb 100644 --- a/nipype/interfaces/spm/tests/test_auto_MultipleRegressionDesign.py +++ b/nipype/interfaces/spm/tests/test_auto_MultipleRegressionDesign.py @@ -20,11 +20,6 @@ def test_MultipleRegressionDesign_inputs(): xor=['global_calc_mean', 'global_calc_omit'], ), global_normalization=dict(field='globalm.glonorm', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( field='des.mreg.scans', mandatory=True, diff --git a/nipype/interfaces/spm/tests/test_auto_NewSegment.py b/nipype/interfaces/spm/tests/test_auto_NewSegment.py index eead9de915..3f03685e11 100644 --- a/nipype/interfaces/spm/tests/test_auto_NewSegment.py +++ b/nipype/interfaces/spm/tests/test_auto_NewSegment.py @@ -12,11 +12,6 @@ def test_NewSegment_inputs(): mandatory=True, ), channel_info=dict(field='channel', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), paths=dict(), diff --git a/nipype/interfaces/spm/tests/test_auto_Normalize.py b/nipype/interfaces/spm/tests/test_auto_Normalize.py index 0d98c9bae7..fde0bf7fff 100644 --- a/nipype/interfaces/spm/tests/test_auto_Normalize.py +++ b/nipype/interfaces/spm/tests/test_auto_Normalize.py @@ -11,11 +11,6 @@ def test_Normalize_inputs(): copyfile=True, field='subj.resample', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), jobtype=dict(usedefault=True, ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), diff --git a/nipype/interfaces/spm/tests/test_auto_Normalize12.py b/nipype/interfaces/spm/tests/test_auto_Normalize12.py index d56b9c4c2a..bf8da2dba1 100644 --- a/nipype/interfaces/spm/tests/test_auto_Normalize12.py +++ b/nipype/interfaces/spm/tests/test_auto_Normalize12.py @@ -18,11 +18,6 @@ def test_Normalize12_inputs(): mandatory=True, xor=['image_to_align', 'tpm'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), image_to_align=dict( copyfile=True, field='subj.vol', diff --git a/nipype/interfaces/spm/tests/test_auto_OneSampleTTestDesign.py b/nipype/interfaces/spm/tests/test_auto_OneSampleTTestDesign.py index 41ba89895c..dbb02a6275 100644 --- a/nipype/interfaces/spm/tests/test_auto_OneSampleTTestDesign.py +++ b/nipype/interfaces/spm/tests/test_auto_OneSampleTTestDesign.py @@ -20,11 +20,6 @@ def test_OneSampleTTestDesign_inputs(): xor=['global_calc_mean', 'global_calc_omit'], ), global_normalization=dict(field='globalm.glonorm', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( field='des.t1.scans', mandatory=True, diff --git a/nipype/interfaces/spm/tests/test_auto_PairedTTestDesign.py b/nipype/interfaces/spm/tests/test_auto_PairedTTestDesign.py index 8a6d68fc20..3e1662268a 100644 --- a/nipype/interfaces/spm/tests/test_auto_PairedTTestDesign.py +++ b/nipype/interfaces/spm/tests/test_auto_PairedTTestDesign.py @@ -22,11 +22,6 @@ def test_PairedTTestDesign_inputs(): ), global_normalization=dict(field='globalm.glonorm', ), grand_mean_scaling=dict(field='des.pt.gmsca', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), no_grand_mean_scaling=dict(field='globalm.gmsca.gmsca_no', ), diff --git a/nipype/interfaces/spm/tests/test_auto_Realign.py b/nipype/interfaces/spm/tests/test_auto_Realign.py index 2c9cd7bb42..ac2f5bbd92 100644 --- a/nipype/interfaces/spm/tests/test_auto_Realign.py +++ b/nipype/interfaces/spm/tests/test_auto_Realign.py @@ -6,11 +6,6 @@ def test_Realign_inputs(): input_map = dict( fwhm=dict(field='eoptions.fwhm', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( copyfile=True, field='data', diff --git a/nipype/interfaces/spm/tests/test_auto_Reslice.py b/nipype/interfaces/spm/tests/test_auto_Reslice.py index 6fd7f02c51..81299fc748 100644 --- a/nipype/interfaces/spm/tests/test_auto_Reslice.py +++ b/nipype/interfaces/spm/tests/test_auto_Reslice.py @@ -5,11 +5,6 @@ def test_Reslice_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(mandatory=True, ), interp=dict(usedefault=True, ), matlab_cmd=dict(), diff --git a/nipype/interfaces/spm/tests/test_auto_ResliceToReference.py b/nipype/interfaces/spm/tests/test_auto_ResliceToReference.py index 48704de37b..3e39ade181 100644 --- a/nipype/interfaces/spm/tests/test_auto_ResliceToReference.py +++ b/nipype/interfaces/spm/tests/test_auto_ResliceToReference.py @@ -6,11 +6,6 @@ def test_ResliceToReference_inputs(): input_map = dict( bounding_box=dict(field='comp{2}.idbbvox.bb', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( field='fnames', mandatory=True, diff --git a/nipype/interfaces/spm/tests/test_auto_SPMCommand.py b/nipype/interfaces/spm/tests/test_auto_SPMCommand.py index 2adf53dead..7c1ba5cbc2 100644 --- a/nipype/interfaces/spm/tests/test_auto_SPMCommand.py +++ b/nipype/interfaces/spm/tests/test_auto_SPMCommand.py @@ -5,11 +5,6 @@ def test_SPMCommand_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), paths=dict(), diff --git a/nipype/interfaces/spm/tests/test_auto_Segment.py b/nipype/interfaces/spm/tests/test_auto_Segment.py index 61021c9599..f6df46e1de 100644 --- a/nipype/interfaces/spm/tests/test_auto_Segment.py +++ b/nipype/interfaces/spm/tests/test_auto_Segment.py @@ -17,11 +17,6 @@ def test_Segment_inputs(): ), gaussians_per_class=dict(field='opts.ngaus', ), gm_output_type=dict(field='output.GM', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), mask_image=dict(field='opts.msk', ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), diff --git a/nipype/interfaces/spm/tests/test_auto_SliceTiming.py b/nipype/interfaces/spm/tests/test_auto_SliceTiming.py index 575c6c0cca..85fb1bc4e4 100644 --- a/nipype/interfaces/spm/tests/test_auto_SliceTiming.py +++ b/nipype/interfaces/spm/tests/test_auto_SliceTiming.py @@ -5,11 +5,6 @@ def test_SliceTiming_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( copyfile=False, field='scans', diff --git a/nipype/interfaces/spm/tests/test_auto_Smooth.py b/nipype/interfaces/spm/tests/test_auto_Smooth.py index 28e44f2ed3..eea60ed619 100644 --- a/nipype/interfaces/spm/tests/test_auto_Smooth.py +++ b/nipype/interfaces/spm/tests/test_auto_Smooth.py @@ -7,11 +7,6 @@ def test_Smooth_inputs(): input_map = dict( data_type=dict(field='dtype', ), fwhm=dict(field='fwhm', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), implicit_masking=dict(field='im', ), in_files=dict( copyfile=False, diff --git a/nipype/interfaces/spm/tests/test_auto_Threshold.py b/nipype/interfaces/spm/tests/test_auto_Threshold.py index 4a97ee3c14..078adb3a1b 100644 --- a/nipype/interfaces/spm/tests/test_auto_Threshold.py +++ b/nipype/interfaces/spm/tests/test_auto_Threshold.py @@ -11,11 +11,6 @@ def test_Threshold_inputs(): force_activation=dict(usedefault=True, ), height_threshold=dict(usedefault=True, ), height_threshold_type=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), paths=dict(), diff --git a/nipype/interfaces/spm/tests/test_auto_ThresholdStatistics.py b/nipype/interfaces/spm/tests/test_auto_ThresholdStatistics.py index 93eb42db58..ccdc441e04 100644 --- a/nipype/interfaces/spm/tests/test_auto_ThresholdStatistics.py +++ b/nipype/interfaces/spm/tests/test_auto_ThresholdStatistics.py @@ -8,11 +8,6 @@ def test_ThresholdStatistics_inputs(): contrast_index=dict(mandatory=True, ), extent_threshold=dict(usedefault=True, ), height_threshold=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), paths=dict(), diff --git a/nipype/interfaces/spm/tests/test_auto_TwoSampleTTestDesign.py b/nipype/interfaces/spm/tests/test_auto_TwoSampleTTestDesign.py index e2d82629d6..4dfbc12570 100644 --- a/nipype/interfaces/spm/tests/test_auto_TwoSampleTTestDesign.py +++ b/nipype/interfaces/spm/tests/test_auto_TwoSampleTTestDesign.py @@ -29,11 +29,6 @@ def test_TwoSampleTTestDesign_inputs(): field='des.t2.scans2', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), matlab_cmd=dict(), mfile=dict(usedefault=True, ), no_grand_mean_scaling=dict(field='globalm.gmsca.gmsca_no', ), diff --git a/nipype/interfaces/spm/tests/test_auto_VBMSegment.py b/nipype/interfaces/spm/tests/test_auto_VBMSegment.py index 6ef35124f3..6aaac2b489 100644 --- a/nipype/interfaces/spm/tests/test_auto_VBMSegment.py +++ b/nipype/interfaces/spm/tests/test_auto_VBMSegment.py @@ -72,11 +72,6 @@ def test_VBMSegment_inputs(): field='estwrite.output.GM.warped', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_files=dict( copyfile=False, field='estwrite.data', diff --git a/nipype/interfaces/tests/test_auto_Bru2.py b/nipype/interfaces/tests/test_auto_Bru2.py index 5a33f26ecf..d386b3f095 100644 --- a/nipype/interfaces/tests/test_auto_Bru2.py +++ b/nipype/interfaces/tests/test_auto_Bru2.py @@ -13,11 +13,6 @@ def test_Bru2_inputs(): usedefault=True, ), force_conversion=dict(argstr='-f', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), input_dir=dict( argstr='%s', mandatory=True, @@ -27,10 +22,6 @@ def test_Bru2_inputs(): argstr='-o %s', genfile=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Bru2.input_spec() diff --git a/nipype/interfaces/tests/test_auto_C3d.py b/nipype/interfaces/tests/test_auto_C3d.py index 18300e2aff..9e74e82e2a 100644 --- a/nipype/interfaces/tests/test_auto_C3d.py +++ b/nipype/interfaces/tests/test_auto_C3d.py @@ -10,11 +10,6 @@ def test_C3d_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -42,10 +37,6 @@ def test_C3d_inputs(): scale=dict(argstr='-scale %s', ), shift=dict(argstr='-shift %s', ), smooth=dict(argstr='-smooth %s', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = C3d.input_spec() diff --git a/nipype/interfaces/tests/test_auto_C3dAffineTool.py b/nipype/interfaces/tests/test_auto_C3dAffineTool.py index 17304e1252..510ea2f02a 100644 --- a/nipype/interfaces/tests/test_auto_C3dAffineTool.py +++ b/nipype/interfaces/tests/test_auto_C3dAffineTool.py @@ -14,11 +14,6 @@ def test_C3dAffineTool_inputs(): argstr='-fsl2ras', position=4, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), itk_transform=dict( argstr='-oitk %s', hash_files=False, @@ -32,10 +27,6 @@ def test_C3dAffineTool_inputs(): argstr='-src %s', position=2, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), transform_file=dict( argstr='%s', position=3, diff --git a/nipype/interfaces/tests/test_auto_DataFinder.py b/nipype/interfaces/tests/test_auto_DataFinder.py index c186db9e00..9a1b7418df 100644 --- a/nipype/interfaces/tests/test_auto_DataFinder.py +++ b/nipype/interfaces/tests/test_auto_DataFinder.py @@ -5,11 +5,6 @@ def test_DataFinder_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ignore_regexes=dict(), match_regex=dict(usedefault=True, ), max_depth=dict(), diff --git a/nipype/interfaces/tests/test_auto_DataGrabber.py b/nipype/interfaces/tests/test_auto_DataGrabber.py index 2705ca7089..d39db0b527 100644 --- a/nipype/interfaces/tests/test_auto_DataGrabber.py +++ b/nipype/interfaces/tests/test_auto_DataGrabber.py @@ -7,11 +7,6 @@ def test_DataGrabber_inputs(): input_map = dict( base_directory=dict(), drop_blank_outputs=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), raise_on_empty=dict(usedefault=True, ), sort_filelist=dict(mandatory=True, ), template=dict(mandatory=True, ), diff --git a/nipype/interfaces/tests/test_auto_DataSink.py b/nipype/interfaces/tests/test_auto_DataSink.py index fec7475737..da26854451 100644 --- a/nipype/interfaces/tests/test_auto_DataSink.py +++ b/nipype/interfaces/tests/test_auto_DataSink.py @@ -11,11 +11,6 @@ def test_DataSink_inputs(): container=dict(), creds_path=dict(), encrypt_bucket_keys=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), local_copy=dict(), parameterization=dict(usedefault=True, ), regexp_substitutions=dict(), diff --git a/nipype/interfaces/tests/test_auto_Dcm2nii.py b/nipype/interfaces/tests/test_auto_Dcm2nii.py index 044a0f918b..0caa45a1f1 100644 --- a/nipype/interfaces/tests/test_auto_Dcm2nii.py +++ b/nipype/interfaces/tests/test_auto_Dcm2nii.py @@ -42,11 +42,6 @@ def test_Dcm2nii_inputs(): argstr='-i', usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), nii_output=dict( argstr='-n', usedefault=True, @@ -85,10 +80,6 @@ def test_Dcm2nii_inputs(): argstr='-s', xor=['nii_output'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Dcm2nii.input_spec() diff --git a/nipype/interfaces/tests/test_auto_Dcm2niix.py b/nipype/interfaces/tests/test_auto_Dcm2niix.py index ae90404829..5917f48583 100644 --- a/nipype/interfaces/tests/test_auto_Dcm2niix.py +++ b/nipype/interfaces/tests/test_auto_Dcm2niix.py @@ -33,11 +33,6 @@ def test_Dcm2niix_inputs(): usedefault=True, ), ignore_deriv=dict(argstr='-i', ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), merge_imgs=dict( argstr='-m', usedefault=True, @@ -66,10 +61,6 @@ def test_Dcm2niix_inputs(): position=-1, xor=['source_dir'], ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), verbose=dict( argstr='-v', usedefault=True, diff --git a/nipype/interfaces/tests/test_auto_FreeSurferSource.py b/nipype/interfaces/tests/test_auto_FreeSurferSource.py index 56e7083143..15ea9c66cd 100644 --- a/nipype/interfaces/tests/test_auto_FreeSurferSource.py +++ b/nipype/interfaces/tests/test_auto_FreeSurferSource.py @@ -6,11 +6,6 @@ def test_FreeSurferSource_inputs(): input_map = dict( hemi=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), subject_id=dict(mandatory=True, ), subjects_dir=dict(mandatory=True, ), ) diff --git a/nipype/interfaces/tests/test_auto_IOBase.py b/nipype/interfaces/tests/test_auto_IOBase.py index 1578f3c62b..c2c2f96431 100644 --- a/nipype/interfaces/tests/test_auto_IOBase.py +++ b/nipype/interfaces/tests/test_auto_IOBase.py @@ -4,12 +4,7 @@ def test_IOBase_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = IOBase.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/tests/test_auto_JSONFileGrabber.py b/nipype/interfaces/tests/test_auto_JSONFileGrabber.py index 7efb3b70fb..03a65cf6c2 100644 --- a/nipype/interfaces/tests/test_auto_JSONFileGrabber.py +++ b/nipype/interfaces/tests/test_auto_JSONFileGrabber.py @@ -6,11 +6,6 @@ def test_JSONFileGrabber_inputs(): input_map = dict( defaults=dict(), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(), ) inputs = JSONFileGrabber.input_spec() diff --git a/nipype/interfaces/tests/test_auto_JSONFileSink.py b/nipype/interfaces/tests/test_auto_JSONFileSink.py index 116eaed977..002997912b 100644 --- a/nipype/interfaces/tests/test_auto_JSONFileSink.py +++ b/nipype/interfaces/tests/test_auto_JSONFileSink.py @@ -6,11 +6,6 @@ def test_JSONFileSink_inputs(): input_map = dict( _outputs=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_dict=dict(usedefault=True, ), out_file=dict(), ) diff --git a/nipype/interfaces/tests/test_auto_MatlabCommand.py b/nipype/interfaces/tests/test_auto_MatlabCommand.py index 2d49dbab4b..c1b971d25d 100644 --- a/nipype/interfaces/tests/test_auto_MatlabCommand.py +++ b/nipype/interfaces/tests/test_auto_MatlabCommand.py @@ -10,11 +10,6 @@ def test_MatlabCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), logfile=dict(argstr='-logfile %s', ), mfile=dict(usedefault=True, ), nodesktop=dict( @@ -40,10 +35,6 @@ def test_MatlabCommand_inputs(): argstr='-singleCompThread', nohash=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), uses_mcr=dict( nohash=True, xor=['nodesktop', 'nosplash', 'single_comp_thread'], diff --git a/nipype/interfaces/tests/test_auto_MeshFix.py b/nipype/interfaces/tests/test_auto_MeshFix.py index 241f200b86..3cc1541d6d 100644 --- a/nipype/interfaces/tests/test_auto_MeshFix.py +++ b/nipype/interfaces/tests/test_auto_MeshFix.py @@ -35,11 +35,6 @@ def test_MeshFix_inputs(): argstr='%d', requires=['finetuning_distance'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file1=dict( argstr='%s', mandatory=True, @@ -79,10 +74,6 @@ def test_MeshFix_inputs(): xor=['save_as_stl', 'save_as_freesurfer_mesh'], ), set_intersections_to_one=dict(argstr='--intersect', ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), uniform_remeshing_steps=dict( argstr='-u %d', requires=['uniform_remeshing_vertices'], diff --git a/nipype/interfaces/tests/test_auto_MySQLSink.py b/nipype/interfaces/tests/test_auto_MySQLSink.py index 3df9e4532f..048699659a 100644 --- a/nipype/interfaces/tests/test_auto_MySQLSink.py +++ b/nipype/interfaces/tests/test_auto_MySQLSink.py @@ -16,11 +16,6 @@ def test_MySQLSink_inputs(): usedefault=True, xor=['config'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), password=dict(), table_name=dict(mandatory=True, ), username=dict(), diff --git a/nipype/interfaces/tests/test_auto_NiftiGeneratorBase.py b/nipype/interfaces/tests/test_auto_NiftiGeneratorBase.py index c81cd38afa..88bc12dfa2 100644 --- a/nipype/interfaces/tests/test_auto_NiftiGeneratorBase.py +++ b/nipype/interfaces/tests/test_auto_NiftiGeneratorBase.py @@ -4,12 +4,7 @@ def test_NiftiGeneratorBase_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = NiftiGeneratorBase.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/tests/test_auto_NilearnBaseInterface.py b/nipype/interfaces/tests/test_auto_NilearnBaseInterface.py index 76021c3b30..38e4cfd698 100644 --- a/nipype/interfaces/tests/test_auto_NilearnBaseInterface.py +++ b/nipype/interfaces/tests/test_auto_NilearnBaseInterface.py @@ -4,12 +4,7 @@ def test_NilearnBaseInterface_inputs(): - input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), ) + input_map = dict() inputs = NilearnBaseInterface.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/tests/test_auto_PETPVC.py b/nipype/interfaces/tests/test_auto_PETPVC.py index fd7d5cf571..c5283435d5 100644 --- a/nipype/interfaces/tests/test_auto_PETPVC.py +++ b/nipype/interfaces/tests/test_auto_PETPVC.py @@ -30,11 +30,6 @@ def test_PETPVC_inputs(): argstr='-z %.4f', mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-i %s', mandatory=True, @@ -64,10 +59,6 @@ def test_PETPVC_inputs(): argstr='-a %.4f', usedefault=True, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = PETPVC.input_spec() diff --git a/nipype/interfaces/tests/test_auto_Quickshear.py b/nipype/interfaces/tests/test_auto_Quickshear.py index a123444790..7f39a6bc96 100644 --- a/nipype/interfaces/tests/test_auto_Quickshear.py +++ b/nipype/interfaces/tests/test_auto_Quickshear.py @@ -14,11 +14,6 @@ def test_Quickshear_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -36,10 +31,6 @@ def test_Quickshear_inputs(): name_template='%s_defaced', position=3, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Quickshear.input_spec() diff --git a/nipype/interfaces/tests/test_auto_Reorient.py b/nipype/interfaces/tests/test_auto_Reorient.py index 19d322df4c..2e45a1ca7f 100644 --- a/nipype/interfaces/tests/test_auto_Reorient.py +++ b/nipype/interfaces/tests/test_auto_Reorient.py @@ -5,11 +5,6 @@ def test_Reorient_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(mandatory=True, ), orientation=dict(usedefault=True, ), ) diff --git a/nipype/interfaces/tests/test_auto_S3DataGrabber.py b/nipype/interfaces/tests/test_auto_S3DataGrabber.py index 6e8cc8d424..7c69413eb0 100644 --- a/nipype/interfaces/tests/test_auto_S3DataGrabber.py +++ b/nipype/interfaces/tests/test_auto_S3DataGrabber.py @@ -8,11 +8,6 @@ def test_S3DataGrabber_inputs(): anon=dict(usedefault=True, ), bucket=dict(mandatory=True, ), bucket_path=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), local_directory=dict(), raise_on_empty=dict(usedefault=True, ), region=dict(usedefault=True, ), diff --git a/nipype/interfaces/tests/test_auto_SQLiteSink.py b/nipype/interfaces/tests/test_auto_SQLiteSink.py index a57c72d739..ea03663c4c 100644 --- a/nipype/interfaces/tests/test_auto_SQLiteSink.py +++ b/nipype/interfaces/tests/test_auto_SQLiteSink.py @@ -6,11 +6,6 @@ def test_SQLiteSink_inputs(): input_map = dict( database_file=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), table_name=dict(mandatory=True, ), ) inputs = SQLiteSink.input_spec() diff --git a/nipype/interfaces/tests/test_auto_SSHDataGrabber.py b/nipype/interfaces/tests/test_auto_SSHDataGrabber.py index 3a0e65efd6..cc7aa22e38 100644 --- a/nipype/interfaces/tests/test_auto_SSHDataGrabber.py +++ b/nipype/interfaces/tests/test_auto_SSHDataGrabber.py @@ -9,11 +9,6 @@ def test_SSHDataGrabber_inputs(): download_files=dict(usedefault=True, ), drop_blank_outputs=dict(usedefault=True, ), hostname=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), password=dict(), raise_on_empty=dict(usedefault=True, ), sort_filelist=dict(mandatory=True, ), diff --git a/nipype/interfaces/tests/test_auto_SelectFiles.py b/nipype/interfaces/tests/test_auto_SelectFiles.py index 321d853f4a..bf438fb826 100644 --- a/nipype/interfaces/tests/test_auto_SelectFiles.py +++ b/nipype/interfaces/tests/test_auto_SelectFiles.py @@ -7,11 +7,6 @@ def test_SelectFiles_inputs(): input_map = dict( base_directory=dict(), force_lists=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), raise_on_empty=dict(usedefault=True, ), sort_filelist=dict(usedefault=True, ), ) diff --git a/nipype/interfaces/tests/test_auto_SignalExtraction.py b/nipype/interfaces/tests/test_auto_SignalExtraction.py index ce90755994..bc76f5261a 100644 --- a/nipype/interfaces/tests/test_auto_SignalExtraction.py +++ b/nipype/interfaces/tests/test_auto_SignalExtraction.py @@ -7,11 +7,6 @@ def test_SignalExtraction_inputs(): input_map = dict( class_labels=dict(mandatory=True, ), detrend=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(mandatory=True, ), incl_shared_variance=dict(usedefault=True, ), include_global=dict(usedefault=True, ), diff --git a/nipype/interfaces/tests/test_auto_SlicerCommandLine.py b/nipype/interfaces/tests/test_auto_SlicerCommandLine.py index 0322ba0896..057628e879 100644 --- a/nipype/interfaces/tests/test_auto_SlicerCommandLine.py +++ b/nipype/interfaces/tests/test_auto_SlicerCommandLine.py @@ -10,16 +10,7 @@ def test_SlicerCommandLine_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), module=dict(), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = SlicerCommandLine.input_spec() diff --git a/nipype/interfaces/tests/test_auto_XNATSink.py b/nipype/interfaces/tests/test_auto_XNATSink.py index e10813bc3d..b4db5ec8d3 100644 --- a/nipype/interfaces/tests/test_auto_XNATSink.py +++ b/nipype/interfaces/tests/test_auto_XNATSink.py @@ -13,11 +13,6 @@ def test_XNATSink_inputs(): xor=['server'], ), experiment_id=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), project_id=dict(mandatory=True, ), pwd=dict(), reconstruction_id=dict(xor=['assessor_id'], ), diff --git a/nipype/interfaces/tests/test_auto_XNATSource.py b/nipype/interfaces/tests/test_auto_XNATSource.py index c3efc99cbc..8faa79af81 100644 --- a/nipype/interfaces/tests/test_auto_XNATSource.py +++ b/nipype/interfaces/tests/test_auto_XNATSource.py @@ -10,11 +10,6 @@ def test_XNATSource_inputs(): mandatory=True, xor=['server'], ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), pwd=dict(), query_template=dict(mandatory=True, ), query_template_args=dict(usedefault=True, ), diff --git a/nipype/interfaces/utility/tests/test_auto_AssertEqual.py b/nipype/interfaces/utility/tests/test_auto_AssertEqual.py index e447523715..284e0f4d62 100644 --- a/nipype/interfaces/utility/tests/test_auto_AssertEqual.py +++ b/nipype/interfaces/utility/tests/test_auto_AssertEqual.py @@ -5,11 +5,6 @@ def test_AssertEqual_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), volume1=dict(mandatory=True, ), volume2=dict(mandatory=True, ), ) diff --git a/nipype/interfaces/utility/tests/test_auto_Function.py b/nipype/interfaces/utility/tests/test_auto_Function.py index f63294f396..5c2505fe16 100644 --- a/nipype/interfaces/utility/tests/test_auto_Function.py +++ b/nipype/interfaces/utility/tests/test_auto_Function.py @@ -4,14 +4,7 @@ def test_Function_inputs(): - input_map = dict( - function_str=dict(mandatory=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - ) + input_map = dict(function_str=dict(mandatory=True, ), ) inputs = Function.input_spec() for key, metadata in list(input_map.items()): diff --git a/nipype/interfaces/utility/tests/test_auto_Merge.py b/nipype/interfaces/utility/tests/test_auto_Merge.py index 5a66b82e92..71e7d2db0a 100644 --- a/nipype/interfaces/utility/tests/test_auto_Merge.py +++ b/nipype/interfaces/utility/tests/test_auto_Merge.py @@ -6,11 +6,6 @@ def test_Merge_inputs(): input_map = dict( axis=dict(usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), no_flatten=dict(usedefault=True, ), ravel_inputs=dict(usedefault=True, ), ) diff --git a/nipype/interfaces/utility/tests/test_auto_Select.py b/nipype/interfaces/utility/tests/test_auto_Select.py index 5af07e1493..e241f7ed76 100644 --- a/nipype/interfaces/utility/tests/test_auto_Select.py +++ b/nipype/interfaces/utility/tests/test_auto_Select.py @@ -5,11 +5,6 @@ def test_Select_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), index=dict(mandatory=True, ), inlist=dict(mandatory=True, ), ) diff --git a/nipype/interfaces/utility/tests/test_auto_Split.py b/nipype/interfaces/utility/tests/test_auto_Split.py index 7b2e16a2d3..8acbceef99 100644 --- a/nipype/interfaces/utility/tests/test_auto_Split.py +++ b/nipype/interfaces/utility/tests/test_auto_Split.py @@ -5,11 +5,6 @@ def test_Split_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), inlist=dict(mandatory=True, ), splits=dict(mandatory=True, ), squeeze=dict(usedefault=True, ), diff --git a/nipype/interfaces/vista/tests/test_auto_Vnifti2Image.py b/nipype/interfaces/vista/tests/test_auto_Vnifti2Image.py index 166f4eb19e..785e87e8b1 100644 --- a/nipype/interfaces/vista/tests/test_auto_Vnifti2Image.py +++ b/nipype/interfaces/vista/tests/test_auto_Vnifti2Image.py @@ -14,11 +14,6 @@ def test_Vnifti2Image_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -32,10 +27,6 @@ def test_Vnifti2Image_inputs(): name_template='%s.v', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = Vnifti2Image.input_spec() diff --git a/nipype/interfaces/vista/tests/test_auto_VtoMat.py b/nipype/interfaces/vista/tests/test_auto_VtoMat.py index 6663f43c9a..ee16266402 100644 --- a/nipype/interfaces/vista/tests/test_auto_VtoMat.py +++ b/nipype/interfaces/vista/tests/test_auto_VtoMat.py @@ -10,11 +10,6 @@ def test_VtoMat_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='-in %s', mandatory=True, @@ -28,10 +23,6 @@ def test_VtoMat_inputs(): name_template='%s.mat', position=-1, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = VtoMat.input_spec() From ef85036e74ffbd88536684eadff749b01b528bcc Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sat, 16 Jun 2018 09:50:39 +0800 Subject: [PATCH 3/8] re-make specs --- nipype/interfaces/tests/test_auto_Rescale.py | 5 ----- .../workbench/tests/test_auto_MetricResample.py | 9 --------- nipype/interfaces/workbench/tests/test_auto_WBCommand.py | 9 --------- 3 files changed, 23 deletions(-) diff --git a/nipype/interfaces/tests/test_auto_Rescale.py b/nipype/interfaces/tests/test_auto_Rescale.py index 639084ecef..e180c82988 100644 --- a/nipype/interfaces/tests/test_auto_Rescale.py +++ b/nipype/interfaces/tests/test_auto_Rescale.py @@ -5,11 +5,6 @@ def test_Rescale_inputs(): input_map = dict( - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict(mandatory=True, ), invert=dict(), percentile=dict(usedefault=True, ), diff --git a/nipype/interfaces/workbench/tests/test_auto_MetricResample.py b/nipype/interfaces/workbench/tests/test_auto_MetricResample.py index 12d9d16908..46a66aa728 100644 --- a/nipype/interfaces/workbench/tests/test_auto_MetricResample.py +++ b/nipype/interfaces/workbench/tests/test_auto_MetricResample.py @@ -29,11 +29,6 @@ def test_MetricResample_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), in_file=dict( argstr='%s', mandatory=True, @@ -68,10 +63,6 @@ def test_MetricResample_inputs(): argstr='-current-roi %s', position=8, ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), valid_roi_out=dict( argstr='-valid-roi-out', position=9, diff --git a/nipype/interfaces/workbench/tests/test_auto_WBCommand.py b/nipype/interfaces/workbench/tests/test_auto_WBCommand.py index 4da4ab8ecf..b496a270dd 100644 --- a/nipype/interfaces/workbench/tests/test_auto_WBCommand.py +++ b/nipype/interfaces/workbench/tests/test_auto_WBCommand.py @@ -10,15 +10,6 @@ def test_WBCommand_inputs(): nohash=True, usedefault=True, ), - ignore_exception=dict( - deprecated='1.0.0', - nohash=True, - usedefault=True, - ), - terminal_output=dict( - deprecated='1.0.0', - nohash=True, - ), ) inputs = WBCommand.input_spec() From 785d9c26e4a0b730471d348d8ad5185b956d753e Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sat, 16 Jun 2018 11:02:49 +0800 Subject: [PATCH 4/8] TEST: Remove more vestiges --- nipype/interfaces/base/core.py | 3 +-- nipype/interfaces/freesurfer/tests/test_FSSurfaceCommand.py | 2 -- nipype/interfaces/tests/test_auto_SEMLikeCommandLine.py | 6 ------ nipype/testing/data/smri_ants_registration_settings.json | 1 - 4 files changed, 1 insertion(+), 11 deletions(-) diff --git a/nipype/interfaces/base/core.py b/nipype/interfaces/base/core.py index 84363eb0be..5fcb0633bc 100644 --- a/nipype/interfaces/base/core.py +++ b/nipype/interfaces/base/core.py @@ -892,8 +892,7 @@ class must be instantiated with a command argument # Use get_traitsfree() to check all inputs set >>> pprint.pprint(cli.inputs.get_traitsfree()) # doctest: {'args': '-al', - 'environ': {'DISPLAY': ':1'}, - 'ignore_exception': False} + 'environ': {'DISPLAY': ':1'}} >>> cli.inputs.get_hashval()[0][0] ('args', '-al') diff --git a/nipype/interfaces/freesurfer/tests/test_FSSurfaceCommand.py b/nipype/interfaces/freesurfer/tests/test_FSSurfaceCommand.py index 529acd6632..704dfeaaf3 100644 --- a/nipype/interfaces/freesurfer/tests/test_FSSurfaceCommand.py +++ b/nipype/interfaces/freesurfer/tests/test_FSSurfaceCommand.py @@ -11,9 +11,7 @@ def test_FSSurfaceCommand_inputs(): input_map = dict( args=dict(argstr='%s'), environ=dict(nohash=True, usedefault=True), - ignore_exception=dict(nohash=True, usedefault=True), subjects_dir=dict(), - terminal_output=dict(nohash=True), ) inputs = FSSurfaceCommand.input_spec() diff --git a/nipype/interfaces/tests/test_auto_SEMLikeCommandLine.py b/nipype/interfaces/tests/test_auto_SEMLikeCommandLine.py index 2012b9d9e1..7777a8443e 100644 --- a/nipype/interfaces/tests/test_auto_SEMLikeCommandLine.py +++ b/nipype/interfaces/tests/test_auto_SEMLikeCommandLine.py @@ -9,12 +9,6 @@ def test_SEMLikeCommandLine_inputs(): environ=dict(nohash=True, usedefault=True, ), - ignore_exception=dict(nohash=True, - usedefault=True, - ), - terminal_output=dict(deprecated='1.0.0', - nohash=True, - ), ) inputs = SEMLikeCommandLine.input_spec() diff --git a/nipype/testing/data/smri_ants_registration_settings.json b/nipype/testing/data/smri_ants_registration_settings.json index 53f33e33e2..f61cccf377 100644 --- a/nipype/testing/data/smri_ants_registration_settings.json +++ b/nipype/testing/data/smri_ants_registration_settings.json @@ -77,7 +77,6 @@ ] ], "interpolation": "Linear", - "ignore_exception": false, "use_estimate_learning_rate_once": [ true, true, From 88668de85573ecae937e29451898e273fc9d6eed Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sat, 16 Jun 2018 12:29:32 +0800 Subject: [PATCH 5/8] Pin specific pybids version in Dockerfile --- docker/generate_dockerfiles.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docker/generate_dockerfiles.sh b/docker/generate_dockerfiles.sh index 5d981d302b..f3df8f80e0 100755 --- a/docker/generate_dockerfiles.sh +++ b/docker/generate_dockerfiles.sh @@ -107,7 +107,7 @@ function generate_main_dockerfile() { pip_opts="-e" \ pip_install="/src/nipype[all]" \ --run-bash "mkdir -p /src/pybids - && curl -sSL --retry 5 https://github.com/INCF/pybids/tarball/master + && curl -sSL --retry 5 https://github.com/INCF/pybids/tarball/0.5.1 | tar -xz -C /src/pybids --strip-components 1 && source activate neuro && pip install --no-cache-dir -e /src/pybids" \ From 249a56c7876717839f3ed7dde7577a43046e705d Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sat, 16 Jun 2018 13:39:55 +0800 Subject: [PATCH 6/8] Pin grabbit 0.1.2 for now --- docker/generate_dockerfiles.sh | 2 ++ 1 file changed, 2 insertions(+) diff --git a/docker/generate_dockerfiles.sh b/docker/generate_dockerfiles.sh index f3df8f80e0..bd1fcb637e 100755 --- a/docker/generate_dockerfiles.sh +++ b/docker/generate_dockerfiles.sh @@ -106,6 +106,8 @@ function generate_main_dockerfile() { pandas psutil scikit-learn scipy traits=4.6.0' \ pip_opts="-e" \ pip_install="/src/nipype[all]" \ + --miniconda env_name=neuro \ + pip_install="grabbit==0.1.2" \ --run-bash "mkdir -p /src/pybids && curl -sSL --retry 5 https://github.com/INCF/pybids/tarball/0.5.1 | tar -xz -C /src/pybids --strip-components 1 From b129a3c9e761f84e73780280cf6498cb464a14aa Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sat, 16 Jun 2018 14:16:08 +0800 Subject: [PATCH 7/8] TEST: Changed hash --- nipype/utils/filemanip.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nipype/utils/filemanip.py b/nipype/utils/filemanip.py index c7458fa5d8..872455839c 100644 --- a/nipype/utils/filemanip.py +++ b/nipype/utils/filemanip.py @@ -230,7 +230,7 @@ def hash_infile(afile, chunk_len=8192, crypto=hashlib.md5, Computes hash of a file using 'crypto' module >>> hash_infile('smri_ants_registration_settings.json') - '49b956387ed8d95a4eb44576fc5103b6' + 'f225785dfb0db9032aa5a0e4f2c730ad' >>> hash_infile('surf01.vtk') 'fdf1cf359b4e346034372cdeb58f9a88' From a663f438d1955e1df59a08f90aadd9a4fe03a904 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Sat, 16 Jun 2018 15:01:05 +0800 Subject: [PATCH 8/8] CI: Pin grabbit 0.1.2 in Travis --- .travis.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.travis.yml b/.travis.yml index 74d5ebed4b..d846bff06f 100644 --- a/.travis.yml +++ b/.travis.yml @@ -50,6 +50,7 @@ before_install: - conda config --add channels conda-forge - travis_retry conda install -y python=${TRAVIS_PYTHON_VERSION} icu - travis_retry pip install -r requirements.txt +- travis_retry pip install grabbit==0.1.2 - travis_retry git clone https://github.com/INCF/pybids.git ${HOME}/pybids && pip install -e ${HOME}/pybids - travis_retry pip install codecov