Merge branch 'basename-fields' of https://github.com/undu/common-workflow-language into undu-basename-fields

Author: Peter Amstutz

v1.0/conformance_test_v1.0.yaml

@@ -995,4 +995,21 @@
     args: [-A,'2',-B,baz,-C,'10','9','8','7','6','5','4','3','2','1']
   job: v1.0/empty.json
   tool: v1.0/inline-js.cwl
-  doc: Test InlineJavascriptRequirement with multiple expressions in the same tool
+  doc: Test InlineJavascriptRequirement with multiple expressions in the same tool
+
+- job: v1.0/basename-fields-job.yml
+  output:
+    extFile:
+      checksum: sha1$301a72c82a835e1737caf30f94d0eec210c4d9f1
+      class: File
+      size: 5
+      location: Any
+      path: Any
+    rootFile:
+      checksum: sha1$b4a583c391e234cf210e1d576f68f674c8ad7ecd
+      class: File
+      size: 10
+      location: Any
+      path: Any
+  tool: v1.0/basename-fields-test.cwl
+  doc: Test that nameroot and nameext are generated from basename at execution time by the runner

v1.0/v1.0/basename-fields-job.yml

@@ -0,0 +1,5 @@
+cwlVersion: v1.0
+tool:
+  class: File
+  path: echo-tool.cwl
+

v1.0/v1.0/basename-fields-test.cwl

@@ -0,0 +1,33 @@
+cwlVersion: v1.0
+class: Workflow
+
+requirements:
+  - class: StepInputExpressionRequirement
+
+inputs:
+  tool: File
+
+outputs:
+  rootFile:
+    type: File
+    outputSource: root/out
+  extFile:
+    type: File
+    outputSource: ext/out
+
+steps:
+  root:
+    run: echo-file-tool.cwl
+    in:
+      tool: tool
+      in:
+        valueFrom: $(inputs.tool.nameroot)
+    out: [out]
+  ext:
+    run: echo-file-tool.cwl
+    in:
+      tool: tool
+      in:
+        valueFrom: $(inputs.tool.nameext)
+    out: [out]
+

v1.0/v1.0/echo-file-tool.cwl

@@ -0,0 +1,12 @@
+cwlVersion: v1.0
+class: CommandLineTool
+baseCommand: [echo]
+inputs:
+  in:
+    type: string
+    inputBinding:
+      position: 1
+outputs:
+  out:
+    type: stdout
+