Account for memory usage in SortPreservingMerge

Author: alamb

datafusion/common/src/config.rs

@@ -235,6 +235,23 @@ config_namespace! {
         ///
         /// Defaults to the number of CPU cores on the system
         pub planning_concurrency: usize, default = num_cpus::get()
+
+        /// How much memory is set aside, for each spillable sort, to
+        /// ensure an in-memory merge can occur. This setting has no
+        /// if the sort can not spill (there is no `DiskManager`
+        /// configured)
+        ///
+        /// As part of spilling to disk, in memory data must be sorted
+        /// / merged before writing the file. This in-memory
+        /// sort/merge requires memory as well, so To avoid allocating
+        /// once memory is exhausted, DataFusion sets aside this
+        /// many bytes before.
+        pub sort_spill_reservation_bytes: usize, default = 10 * 1024 * 1024
+
+        /// When sorting, below what size should data be concatenated
+        /// and sorted in a single RecordBatch rather than sorted in
+        /// batches and merged.
+        pub sort_in_place_threshold_bytes: usize, default = 1024 * 1024
     }
 }
 

datafusion/core/src/physical_plan/repartition/mod.rs

@@ -576,14 +576,21 @@ impl ExecutionPlan for RepartitionExec {
 
             // Get existing ordering:
             let sort_exprs = self.input.output_ordering().unwrap_or(&[]);
-            // Merge streams (while preserving ordering) coming from input partitions to this partition:
+
+            // Merge streams (while preserving ordering) coming from
+            // input partitions to this partition:
+            let fetch = None;
+            let merge_reservation =
+                MemoryConsumer::new(format!("{}[Merge {partition}]", self.name()))
+                    .register(context.memory_pool());
             streaming_merge(
                 input_streams,
                 self.schema(),
                 sort_exprs,
                 BaselineMetrics::new(&self.metrics, partition),
                 context.session_config().batch_size(),
-                None,
+                fetch,
+                merge_reservation,
             )
         } else {
             Ok(Box::pin(RepartitionStream {

datafusion/core/src/physical_plan/sorts/builder.rs

@@ -19,6 +19,7 @@ use arrow::compute::interleave;
 use arrow::datatypes::SchemaRef;
 use arrow::record_batch::RecordBatch;
 use datafusion_common::Result;
+use datafusion_execution::memory_pool::MemoryReservation;
 
 #[derive(Debug, Copy, Clone, Default)]
 struct BatchCursor {
@@ -37,6 +38,9 @@ pub struct BatchBuilder {
     /// Maintain a list of [`RecordBatch`] and their corresponding stream
     batches: Vec<(usize, RecordBatch)>,
 
+    /// Accounts for memory used by buffered batches
+    reservation: MemoryReservation,
+
     /// The current [`BatchCursor`] for each stream
     cursors: Vec<BatchCursor>,
 
@@ -47,23 +51,31 @@ pub struct BatchBuilder {
 
 impl BatchBuilder {
     /// Create a new [`BatchBuilder`] with the provided `stream_count` and `batch_size`
-    pub fn new(schema: SchemaRef, stream_count: usize, batch_size: usize) -> Self {
+    pub fn new(
+        schema: SchemaRef,
+        stream_count: usize,
+        batch_size: usize,
+        reservation: MemoryReservation,
+    ) -> Self {
         Self {
             schema,
             batches: Vec::with_capacity(stream_count * 2),
             cursors: vec![BatchCursor::default(); stream_count],
             indices: Vec::with_capacity(batch_size),
+            reservation,
         }
     }
 
     /// Append a new batch in `stream_idx`
-    pub fn push_batch(&mut self, stream_idx: usize, batch: RecordBatch) {
+    pub fn push_batch(&mut self, stream_idx: usize, batch: RecordBatch) -> Result<()> {
+        self.reservation.try_grow(batch.get_array_memory_size())?;
         let batch_idx = self.batches.len();
         self.batches.push((stream_idx, batch));
         self.cursors[stream_idx] = BatchCursor {
             batch_idx,
             row_idx: 0,
-        }
+        };
+        Ok(())
     }
 
     /// Append the next row from `stream_idx`
@@ -119,14 +131,16 @@ impl BatchBuilder {
         // We can therefore drop all but the last batch for each stream
         let mut batch_idx = 0;
         let mut retained = 0;
-        self.batches.retain(|(stream_idx, _)| {
+        self.batches.retain(|(stream_idx, batch)| {
             let stream_cursor = &mut self.cursors[*stream_idx];
             let retain = stream_cursor.batch_idx == batch_idx;
             batch_idx += 1;
 
             if retain {
                 stream_cursor.batch_idx = retained;
                 retained += 1;
+            } else {
+                self.reservation.shrink(batch.get_array_memory_size());
             }
             retain
         });

datafusion/core/src/physical_plan/sorts/cursor.rs

@@ -21,6 +21,7 @@ use arrow::datatypes::ArrowNativeTypeOp;
 use arrow::row::{Row, Rows};
 use arrow_array::types::ByteArrayType;
 use arrow_array::{Array, ArrowPrimitiveType, GenericByteArray, PrimitiveArray};
+use datafusion_execution::memory_pool::MemoryReservation;
 use std::cmp::Ordering;
 
 /// A [`Cursor`] for [`Rows`]
@@ -29,6 +30,11 @@ pub struct RowCursor {
     num_rows: usize,
 
     rows: Rows,
+
+    /// tracks the reservation for the memory in the `Rows` of this
+    /// cursor. Freed on drop
+    #[allow(dead_code)]
+    reservation: MemoryReservation,
 }
 
 impl std::fmt::Debug for RowCursor {
@@ -41,12 +47,18 @@ impl std::fmt::Debug for RowCursor {
 }
 
 impl RowCursor {
-    /// Create a new SortKeyCursor
-    pub fn new(rows: Rows) -> Self {
+    /// Create a new SortKeyCursor from `rows` and the associated `reservation`
+    pub fn new(rows: Rows, reservation: MemoryReservation) -> Self {
+        assert_eq!(
+            rows.size(),
+            reservation.size(),
+            "memory reservation mismatch"
+        );
         Self {
             cur_row: 0,
             num_rows: rows.num_rows(),
             rows,
+            reservation,
         }
     }
 

datafusion/core/src/physical_plan/sorts/merge.rs

@@ -31,6 +31,7 @@ use arrow::datatypes::{DataType, SchemaRef};
 use arrow::record_batch::RecordBatch;
 use arrow_array::*;
 use datafusion_common::Result;
+use datafusion_execution::memory_pool::MemoryReservation;
 use futures::Stream;
 use std::pin::Pin;
 use std::task::{ready, Context, Poll};
@@ -42,14 +43,15 @@ macro_rules! primitive_merge_helper {
 }
 
 macro_rules! merge_helper {
-    ($t:ty, $sort:ident, $streams:ident, $schema:ident, $tracking_metrics:ident, $batch_size:ident, $fetch:ident) => {{
+    ($t:ty, $sort:ident, $streams:ident, $schema:ident, $tracking_metrics:ident, $batch_size:ident, $fetch:ident, $reservation:ident) => {{
         let streams = FieldCursorStream::<$t>::new($sort, $streams);
         return Ok(Box::pin(SortPreservingMergeStream::new(
             Box::new(streams),
             $schema,
             $tracking_metrics,
             $batch_size,
             $fetch,
+            $reservation,
         )));
     }};
 }
@@ -63,28 +65,36 @@ pub fn streaming_merge(
     metrics: BaselineMetrics,
     batch_size: usize,
     fetch: Option<usize>,
+    reservation: MemoryReservation,
 ) -> Result<SendableRecordBatchStream> {
     // Special case single column comparisons with optimized cursor implementations
     if expressions.len() == 1 {
         let sort = expressions[0].clone();
         let data_type = sort.expr.data_type(schema.as_ref())?;
         downcast_primitive! {
-            data_type => (primitive_merge_helper, sort, streams, schema, metrics, batch_size, fetch),
-            DataType::Utf8 => merge_helper!(StringArray, sort, streams, schema, metrics, batch_size, fetch)
-            DataType::LargeUtf8 => merge_helper!(LargeStringArray, sort, streams, schema, metrics, batch_size, fetch)
-            DataType::Binary => merge_helper!(BinaryArray, sort, streams, schema, metrics, batch_size, fetch)
-            DataType::LargeBinary => merge_helper!(LargeBinaryArray, sort, streams, schema, metrics, batch_size, fetch)
+            data_type => (primitive_merge_helper, sort, streams, schema, metrics, batch_size, fetch, reservation),
+            DataType::Utf8 => merge_helper!(StringArray, sort, streams, schema, metrics, batch_size, fetch, reservation)
+            DataType::LargeUtf8 => merge_helper!(LargeStringArray, sort, streams, schema, metrics, batch_size, fetch, reservation)
+            DataType::Binary => merge_helper!(BinaryArray, sort, streams, schema, metrics, batch_size, fetch, reservation)
+            DataType::LargeBinary => merge_helper!(LargeBinaryArray, sort, streams, schema, metrics, batch_size, fetch, reservation)
             _ => {}
         }
     }
 
-    let streams = RowCursorStream::try_new(schema.as_ref(), expressions, streams)?;
+    let streams = RowCursorStream::try_new(
+        schema.as_ref(),
+        expressions,
+        streams,
+        reservation.new_empty(),
+    )?;
+
     Ok(Box::pin(SortPreservingMergeStream::new(
         Box::new(streams),
         schema,
         metrics,
         batch_size,
         fetch,
+        reservation,
     )))
 }
 
@@ -162,11 +172,12 @@ impl<C: Cursor> SortPreservingMergeStream<C> {
         metrics: BaselineMetrics,
         batch_size: usize,
         fetch: Option<usize>,
+        reservation: MemoryReservation,
     ) -> Self {
         let stream_count = streams.partitions();
 
         Self {
-            in_progress: BatchBuilder::new(schema, stream_count, batch_size),
+            in_progress: BatchBuilder::new(schema, stream_count, batch_size, reservation),
             streams,
             metrics,
             aborted: false,
@@ -197,8 +208,7 @@ impl<C: Cursor> SortPreservingMergeStream<C> {
             Some(Err(e)) => Poll::Ready(Err(e)),
             Some(Ok((cursor, batch))) => {
                 self.cursors[idx] = Some(cursor);
-                self.in_progress.push_batch(idx, batch);
-                Poll::Ready(Ok(()))
+                Poll::Ready(self.in_progress.push_batch(idx, batch))
             }
         }
     }