Why is nproc=0 for fgsea in GSEA function? #756
                  
                    
                      robertwinkler-research
                    
                  
                
                  started this conversation in
                General
              
            Replies: 0 comments
  
    Sign up for free
    to join this conversation on GitHub.
    Already have an account?
    Sign in to comment
  
        
    
Uh oh!
There was an error while loading. Please reload this page.
Uh oh!
There was an error while loading. Please reload this page.
-
Dear YuLab,
first thanks for your contributions.
I was wondering why is nproc specified nproc = 0 when clusterProfiler::GSEA calls fgsea? Could it be passed on instead? Not having the option makes GSEA very slow, even though I prefer GSEA to using fgsea directly due to convenience.
Thank you!
Edit: I noticed this pertains more to DOSE...
Beta Was this translation helpful? Give feedback.
All reactions