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@Teichlab

Teichmann Group

Sarah Teichmann's group at University of Cambridge: Cambridge Stem Cell Institute & Department of Medicine

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  1. celltypist celltypist Public

    A tool for semi-automatic cell type classification

    Python 425 50

  2. cellhint cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Python 115 15

  3. drug2cell drug2cell Public

    Gene group activity utility functions for Scanpy

    Jupyter Notebook 95 4

  4. bin2cell bin2cell Public

    Join subcellular Visium HD bins into cells

    Python 128 12

  5. Genes2Genes Genes2Genes Public

    Aligning gene expression trajectories of single-cell reference and query systems

    Jupyter Notebook 76 10

  6. cell2tcr cell2tcr Public

    Inference of TCR motifs

    Jupyter Notebook 32 3

Repositories

Showing 10 of 73 repositories
  • celltypist Public

    A tool for semi-automatic cell type classification

    Teichlab/celltypist’s past year of commit activity
    Python 425 MIT 50 42 2 Updated Nov 13, 2025
  • csd3-scripts Public

    Various utility scripts for CSD3 survival

    Teichlab/csd3-scripts’s past year of commit activity
    Python 1 0 0 0 Updated Nov 10, 2025
  • bin2cell Public

    Join subcellular Visium HD bins into cells

    Teichlab/bin2cell’s past year of commit activity
    Python 128 MIT 12 7 0 Updated Nov 4, 2025
  • sctk Public
    Teichlab/sctk’s past year of commit activity
    Python 43 GPL-3.0 8 1 1 Updated Nov 3, 2025
  • cellhint Public

    A tool for semi-automatic cell type harmonization and integration

    Teichlab/cellhint’s past year of commit activity
    Python 115 MIT 15 6 0 Updated Nov 3, 2025
  • celcomen Public
    Teichlab/celcomen’s past year of commit activity
    Jupyter Notebook 16 GPL-3.0 0 0 0 Updated Oct 29, 2025
  • PanGIAtlas Public

    Integration of gut cell atlases

    Teichlab/PanGIAtlas’s past year of commit activity
    Jupyter Notebook 29 GPL-3.0 7 2 0 Updated Oct 29, 2025
  • TissueTag Public

    Python package to interactively annotate histological images within a jupyter notebook

    Teichlab/TissueTag’s past year of commit activity
    Jupyter Notebook 18 BSD-3-Clause 2 1 0 Updated Oct 20, 2025
  • visium_stitcher Public

    Stitch multiple Visium slides together

    Teichlab/visium_stitcher’s past year of commit activity
    Jupyter Notebook 16 MIT 1 1 0 Updated Oct 16, 2025
  • bracer Public

    BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data

    Teichlab/bracer’s past year of commit activity
    Python 42 23 17 (1 issue needs help) 2 Updated Oct 15, 2025