rebase changes

Author: nawazishkhan1-nk

Libs/Particles/ParticleShapeStatistics.cpp

@@ -694,4 +694,6 @@ Eigen::MatrixXd ParticleShapeStatistics::get_group1_matrix() const { return grou
 //---------------------------------------------------------------------------
 Eigen::MatrixXd ParticleShapeStatistics::get_group2_matrix() const { return group2_matrix_; }
 
+
+
 }  // namespace shapeworks

Studio/Analysis/AnalysisTool.cpp

@@ -869,7 +869,7 @@ void AnalysisTool::store_settings() {
   params.set("network_pvalue_of_interest", ui_->network_pvalue_of_interest->text().toStdString());
   params.set("network_pvalue_threshold", ui_->network_pvalue_threshold->text().toStdString());
 
-  params.set("regression_slope", session->)
+  // params.set("regression_slope", session->)
 
   session_->get_project()->set_parameters(Parameters::ANALYSIS_PARAMS, params);
 }

Studio/Data/Session.cpp

@@ -837,7 +837,7 @@ void Session::new_plane_point(PickResult result) {
 //---------------------------------------------------------------------------
 QString Session::get_filename() { return filename_; }
 
-QString Session::get_parent_dir()
+// QString Session::get_parent_dir()
 
 //---------------------------------------------------------------------------
 int Session::get_num_shapes() { return shapes_.size(); }

Studio/Interface/ShapeWorksStudioApp.cpp

@@ -1532,8 +1532,8 @@ void ShapeWorksStudioApp::open_project(QString filename) {
   if (optimize_tool_->get_regression_analysis_status())
   {
     // Verify if slope and intercept files exist
-    auto particles_dir = session_->get_filename().dir().absolutePath().toStdString();
-    auto slope_filename = session_->get_filename().toStdString()
+    // auto particles_dir = session_->get_filename().dir().absolutePath().toStdString();
+    // auto slope_filename = session_->get_filename().toStdString();
   }
   analysis_tool_->store_settings();
   update_from_preferences();

Studio/Optimize/OptimizeTool.h

@@ -39,7 +39,7 @@ Q_OBJECT;
   //! Store params to project
 
   //! Get flag if regression needs to enabled for analysis in Studio
-  inline bool get_regression_analysis_status() { return regression_analysis_status; }
+  inline bool get_regression_analysis_status() { return regression_analysis_status_; }
 
   void store_params();
 

Studio/Optimize/OptimizeTool.ui

@@ -881,6 +881,16 @@ QWidget#optimize_panel {
                  </property>
                 </widget>
                </item>
+               <item row="8" column="2">
+                <widget class="QLineEdit" name="geodesic_remesh_percent">
+                 <property name="text">
+                  <string>100</string>
+                 </property>
+                 <property name="alignment">
+                  <set>Qt::AlignCenter</set>
+                 </property>
+                </widget>
+               </item>
                <item row="22" column="2">
                 <widget class="QWidget" name="linear_regression_widget" native="true">
                  <layout class="QGridLayout" name="gridLayout_18">