From b28fbb65742e35da6588488fc7d7ac8c64200718 Mon Sep 17 00:00:00 2001 From: "J. Allen Baron" Date: Wed, 8 Oct 2025 15:26:12 -0400 Subject: [PATCH 1/3] Update trans.md URLs --- ontology/trans.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/ontology/trans.md b/ontology/trans.md index 7ec005dcd..be2d2f295 100644 --- a/ontology/trans.md +++ b/ontology/trans.md @@ -22,9 +22,9 @@ products: - id: trans.owl - id: trans.obo publications: -- id: https://www.ncbi.nlm.nih.gov/pubmed/19850722 +- id: https://pubmed.ncbi.nlm.nih.gov/19850722/ title: GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database -- id: https://www.ncbi.nlm.nih.gov/pubmed/34755882 +- id: https://pubmed.ncbi.nlm.nih.gov/34755882/ title: The Human Disease Ontology 2022 update repository: https://github.com/DiseaseOntology/PathogenTransmissionOntology tags: @@ -34,8 +34,8 @@ usages: - description: Methods of trnasmission of human diseases in the DO examples: - description: methods of transmission of human diseases - url: http://www.disease-ontology.org/?id=DOID:12365 - user: http://www.disease-ontology.org + url: https://disease-ontology.org/?id=DOID:12365 + user: https://disease-ontology.org/ activity_status: active --- From cfe7c4032d7dda9775ddbc96c60500bafc613402 Mon Sep 17 00:00:00 2001 From: "J. Allen Baron" Date: Wed, 8 Oct 2025 15:36:11 -0400 Subject: [PATCH 2/3] Restore PubMed URLs --- ontology/trans.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/ontology/trans.md b/ontology/trans.md index be2d2f295..9f0c6e1b9 100644 --- a/ontology/trans.md +++ b/ontology/trans.md @@ -22,9 +22,9 @@ products: - id: trans.owl - id: trans.obo publications: -- id: https://pubmed.ncbi.nlm.nih.gov/19850722/ +- id: https://www.ncbi.nlm.nih.gov/pubmed/19850722 title: GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database -- id: https://pubmed.ncbi.nlm.nih.gov/34755882/ +- id: https://www.ncbi.nlm.nih.gov/pubmed/34755882 title: The Human Disease Ontology 2022 update repository: https://github.com/DiseaseOntology/PathogenTransmissionOntology tags: From f2d87309623cbc5acae6ca7e1cb60391df71c857 Mon Sep 17 00:00:00 2001 From: "J. Allen Baron" Date: Mon, 13 Oct 2025 15:54:19 -0400 Subject: [PATCH 3/3] Fix spelling errors in trans.md --- ontology/trans.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/ontology/trans.md b/ontology/trans.md index 9f0c6e1b9..7432e6e38 100644 --- a/ontology/trans.md +++ b/ontology/trans.md @@ -31,7 +31,7 @@ tags: - disease tracker: https://github.com/DiseaseOntology/PathogenTransmissionOntology/issues usages: -- description: Methods of trnasmission of human diseases in the DO +- description: Methods of transmission of human diseases in the DO examples: - description: methods of transmission of human diseases url: https://disease-ontology.org/?id=DOID:12365 @@ -39,4 +39,4 @@ usages: activity_status: active --- -The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles. +The Pathogen Transmission Ontology describes the transmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.