diff --git a/data/modules/dragen/PR1912/ADRCV_55146_dragen.roh_metrics.csv b/data/modules/dragen/PR1912/ADRCV_55146_dragen.roh_metrics.csv new file mode 100644 index 00000000..ca243928 --- /dev/null +++ b/data/modules/dragen/PR1912/ADRCV_55146_dragen.roh_metrics.csv @@ -0,0 +1,2 @@ +VARIANT CALLER,,Percent SNVs in large ROH ( >= 3000000),4.873 +VARIANT CALLER,,Number of large ROH ( >= 3000000),4 diff --git a/data/modules/dragen/PR1912/ARcP_0021_dragen.roh_metrics.csv b/data/modules/dragen/PR1912/ARcP_0021_dragen.roh_metrics.csv new file mode 100644 index 00000000..e907405b --- /dev/null +++ b/data/modules/dragen/PR1912/ARcP_0021_dragen.roh_metrics.csv @@ -0,0 +1,2 @@ +VARIANT CALLER,,Percent SNVs in large ROH ( >= 3000000),0.000 +VARIANT CALLER,,Number of large ROH ( >= 3000000),0 diff --git a/data/modules/dragen/PR1912/KpzW_013_dragen.roh_metrics.csv b/data/modules/dragen/PR1912/KpzW_013_dragen.roh_metrics.csv new file mode 100644 index 00000000..f7e8c9b2 --- /dev/null +++ b/data/modules/dragen/PR1912/KpzW_013_dragen.roh_metrics.csv @@ -0,0 +1,2 @@ +VARIANT CALLER,,Percent SNVs in large ROH ( >= 3000000),3.023 +VARIANT CALLER,,Number of large ROH ( >= 3000000),2 diff --git a/data/modules/dragen/PR1912/README.md b/data/modules/dragen/PR1912/README.md new file mode 100644 index 00000000..b359ccdc --- /dev/null +++ b/data/modules/dragen/PR1912/README.md @@ -0,0 +1 @@ +Artificial \.roh_metrics.csv files. diff --git a/data/modules/dragen/PR1912/XhVt_8_dragen.roh_metrics.csv b/data/modules/dragen/PR1912/XhVt_8_dragen.roh_metrics.csv new file mode 100644 index 00000000..6a887712 --- /dev/null +++ b/data/modules/dragen/PR1912/XhVt_8_dragen.roh_metrics.csv @@ -0,0 +1,2 @@ +VARIANT CALLER,,Percent SNVs in large ROH ( >= 3000000),3.715 +VARIANT CALLER,,Number of large ROH ( >= 3000000),3 diff --git a/data/modules/dragen/PR1912/dcX_22855_dragen.roh_metrics.csv b/data/modules/dragen/PR1912/dcX_22855_dragen.roh_metrics.csv new file mode 100644 index 00000000..e3de2af7 --- /dev/null +++ b/data/modules/dragen/PR1912/dcX_22855_dragen.roh_metrics.csv @@ -0,0 +1,2 @@ +VARIANT CALLER,,Percent SNVs in large ROH ( >= 3000000),1.664 +VARIANT CALLER,,Number of large ROH ( >= 3000000),2 diff --git a/data/modules/dragen/PR1912/jL_4364_dragen.roh_metrics.csv b/data/modules/dragen/PR1912/jL_4364_dragen.roh_metrics.csv new file mode 100644 index 00000000..992909b1 --- /dev/null +++ b/data/modules/dragen/PR1912/jL_4364_dragen.roh_metrics.csv @@ -0,0 +1,2 @@ +VARIANT CALLER,,Percent SNVs in large ROH ( >= 3000000),9.124 +VARIANT CALLER,,Number of large ROH ( >= 3000000),11 diff --git a/data/modules/dragen/PR1912/m_560_dragen.roh_metrics.csv b/data/modules/dragen/PR1912/m_560_dragen.roh_metrics.csv new file mode 100644 index 00000000..58d5e83d --- /dev/null +++ b/data/modules/dragen/PR1912/m_560_dragen.roh_metrics.csv @@ -0,0 +1,2 @@ +VARIANT CALLER,,Percent SNVs in large ROH ( >= 3000000),8.725 +VARIANT CALLER,,Number of large ROH ( >= 3000000),10 diff --git a/data/modules/dragen/PR1912/rGn_46_dragen.roh_metrics.csv b/data/modules/dragen/PR1912/rGn_46_dragen.roh_metrics.csv new file mode 100644 index 00000000..697f932c --- /dev/null +++ b/data/modules/dragen/PR1912/rGn_46_dragen.roh_metrics.csv @@ -0,0 +1,2 @@ +VARIANT CALLER,,Percent SNVs in large ROH ( >= 3000000),15.156 +VARIANT CALLER,,Number of large ROH ( >= 3000000),12 diff --git a/data/modules/dragen/PR1912/sg_23615_dragen.roh_metrics.csv b/data/modules/dragen/PR1912/sg_23615_dragen.roh_metrics.csv new file mode 100644 index 00000000..dd26e50d --- /dev/null +++ b/data/modules/dragen/PR1912/sg_23615_dragen.roh_metrics.csv @@ -0,0 +1,2 @@ +VARIANT CALLER,,Percent SNVs in large ROH ( >= 3000000),4.521 +VARIANT CALLER,,Number of large ROH ( >= 3000000),4 diff --git a/data/modules/dragen/PR1912/wYUD_14583_dragen.roh_metrics.csv b/data/modules/dragen/PR1912/wYUD_14583_dragen.roh_metrics.csv new file mode 100644 index 00000000..c307daa5 --- /dev/null +++ b/data/modules/dragen/PR1912/wYUD_14583_dragen.roh_metrics.csv @@ -0,0 +1,2 @@ +VARIANT CALLER,,Percent SNVs in large ROH ( >= 3000000),6.389 +VARIANT CALLER,,Number of large ROH ( >= 3000000),10 diff --git a/data/modules/dragen/PR1913/Igzaq_7_dragen.sv_metrics.csv b/data/modules/dragen/PR1913/Igzaq_7_dragen.sv_metrics.csv new file mode 100644 index 00000000..376f044a --- /dev/null +++ b/data/modules/dragen/PR1913/Igzaq_7_dragen.sv_metrics.csv @@ -0,0 +1,5 @@ +SV SUMMARY,Igzaq_7,Total number of structural variants (PASS),11939 +SV SUMMARY,Igzaq_7,Number of deletions (PASS),4774,39.98 +SV SUMMARY,Igzaq_7,Number of insertions (PASS),6025,50.46 +SV SUMMARY,Igzaq_7,Number of duplications (PASS),36,0.30 +SV SUMMARY,Igzaq_7,Number of breakend pairs (PASS),1104,9.24 diff --git a/data/modules/dragen/PR1913/README.md b/data/modules/dragen/PR1913/README.md new file mode 100644 index 00000000..65f4eb6c --- /dev/null +++ b/data/modules/dragen/PR1913/README.md @@ -0,0 +1 @@ +Artificial \.sv_metrics.csv files. diff --git a/data/modules/dragen/PR1913/R_842_dragen.sv_metrics.csv b/data/modules/dragen/PR1913/R_842_dragen.sv_metrics.csv new file mode 100644 index 00000000..9583e685 --- /dev/null +++ b/data/modules/dragen/PR1913/R_842_dragen.sv_metrics.csv @@ -0,0 +1,10 @@ +SV SUMMARY,R_842,Total number of structural variants (PASS),12293 +SV SUMMARY,R_842,Number of deletions (PASS),5407,43.98 +SV SUMMARY,R_842,Number of insertions (PASS),5683,46.22 +SV SUMMARY,R_842,Number of duplications (PASS),31,0.25 +SV SUMMARY,R_842,Number of breakend pairs (PASS),1172,9.53 +SV SUMMARY,R_184,Total number of structural variants (PASS),12154 +SV SUMMARY,R_184,Number of deletions (PASS),5146,42.33 +SV SUMMARY,R_184,Number of insertions (PASS),5919,48.70 +SV SUMMARY,R_184,Number of duplications (PASS),40,0.32 +SV SUMMARY,R_184,Number of breakend pairs (PASS),1049,8.63 diff --git a/data/modules/dragen/PR1913/fVOl_08_dragen.sv_metrics.csv b/data/modules/dragen/PR1913/fVOl_08_dragen.sv_metrics.csv new file mode 100644 index 00000000..aaeaff55 --- /dev/null +++ b/data/modules/dragen/PR1913/fVOl_08_dragen.sv_metrics.csv @@ -0,0 +1,10 @@ +SV SUMMARY,fVOl_08,Total number of structural variants (PASS),14298 +SV SUMMARY,fVOl_08,Number of deletions (PASS),6989,48.88 +SV SUMMARY,fVOl_08,Number of insertions (PASS),5976,41.79 +SV SUMMARY,fVOl_08,Number of duplications (PASS),39,0.27 +SV SUMMARY,fVOl_08,Number of breakend pairs (PASS),1294,9.05 +SV SUMMARY,W_589,Total number of structural variants (PASS),14294 +SV SUMMARY,W_589,Number of deletions (PASS),6995,48.93 +SV SUMMARY,W_589,Number of insertions (PASS),6361,44.50 +SV SUMMARY,W_589,Number of duplications (PASS),38,0.26 +SV SUMMARY,W_589,Number of breakend pairs (PASS),900,6.29 diff --git a/data/modules/dragen/PR1913/gD_20754_dragen.sv_metrics.csv b/data/modules/dragen/PR1913/gD_20754_dragen.sv_metrics.csv new file mode 100644 index 00000000..b9ff117c --- /dev/null +++ b/data/modules/dragen/PR1913/gD_20754_dragen.sv_metrics.csv @@ -0,0 +1,15 @@ +SV SUMMARY,gD_20754,Total number of structural variants (PASS),12197 +SV SUMMARY,gD_20754,Number of deletions (PASS),6332,51.91 +SV SUMMARY,gD_20754,Number of insertions (PASS),4627,37.93 +SV SUMMARY,gD_20754,Number of duplications (PASS),38,0.31 +SV SUMMARY,gD_20754,Number of breakend pairs (PASS),1200,9.83 +SV SUMMARY,yWr_5,Total number of structural variants (PASS),12273 +SV SUMMARY,yWr_5,Number of deletions (PASS),6614,53.89 +SV SUMMARY,yWr_5,Number of insertions (PASS),4244,34.57 +SV SUMMARY,yWr_5,Number of duplications (PASS),36,0.29 +SV SUMMARY,yWr_5,Number of breakend pairs (PASS),1379,11.23 +SV SUMMARY,jWiHo_5027,Total number of structural variants (PASS),10688 +SV SUMMARY,jWiHo_5027,Number of deletions (PASS),4628,43.30 +SV SUMMARY,jWiHo_5027,Number of insertions (PASS),4497,42.07 +SV SUMMARY,jWiHo_5027,Number of duplications (PASS),38,0.35 +SV SUMMARY,jWiHo_5027,Number of breakend pairs (PASS),1525,14.26 diff --git a/data/modules/dragen/PR1913/halmHb_505_dragen.sv_metrics.csv b/data/modules/dragen/PR1913/halmHb_505_dragen.sv_metrics.csv new file mode 100644 index 00000000..d5928d3a --- /dev/null +++ b/data/modules/dragen/PR1913/halmHb_505_dragen.sv_metrics.csv @@ -0,0 +1,15 @@ +SV SUMMARY,halmHb_505,Total number of structural variants (PASS),12791 +SV SUMMARY,halmHb_505,Number of deletions (PASS),5668,44.31 +SV SUMMARY,halmHb_505,Number of insertions (PASS),5545,43.35 +SV SUMMARY,halmHb_505,Number of duplications (PASS),31,0.24 +SV SUMMARY,halmHb_505,Number of breakend pairs (PASS),1547,12.09 +SV SUMMARY,Q_8,Total number of structural variants (PASS),14151 +SV SUMMARY,Q_8,Number of deletions (PASS),5951,42.05 +SV SUMMARY,Q_8,Number of insertions (PASS),6753,47.72 +SV SUMMARY,Q_8,Number of duplications (PASS),37,0.26 +SV SUMMARY,Q_8,Number of breakend pairs (PASS),1410,9.96 +SV SUMMARY,Oz_16733,Total number of structural variants (PASS),14975 +SV SUMMARY,Oz_16733,Number of deletions (PASS),6911,46.15 +SV SUMMARY,Oz_16733,Number of insertions (PASS),6695,44.70 +SV SUMMARY,Oz_16733,Number of duplications (PASS),30,0.20 +SV SUMMARY,Oz_16733,Number of breakend pairs (PASS),1339,8.94 diff --git a/data/modules/dragen/PR1914/GV_2361_dragen.cnv_metrics.csv b/data/modules/dragen/PR1914/GV_2361_dragen.cnv_metrics.csv new file mode 100644 index 00000000..fee1a868 --- /dev/null +++ b/data/modules/dragen/PR1914/GV_2361_dragen.cnv_metrics.csv @@ -0,0 +1,15 @@ +SEX GENOTYPER,,GV_2361,XX,0.8593 +CNV SUMMARY,,Bases in reference genome,3292461023 +CNV SUMMARY,,Average alignment coverage over genome,0.34 +CNV SUMMARY,,Number of alignment records,3043923866 +CNV SUMMARY,,Number of filtered records (total),302603043,0.2 +CNV SUMMARY,,Number of filtered records (duplicates),8956,0.7 +CNV SUMMARY,,Number of filtered records (MAPQ),348968339,0.72 +CNV SUMMARY,,Number of filtered records (unmapped),357807694,0.41 +CNV SUMMARY,,Coverage uniformity,0.0 +CNV SUMMARY,,Number of target intervals,12857 +CNV SUMMARY,,Number of segments,7095 +CNV SUMMARY,,Number of amplifications,26847 +CNV SUMMARY,,Number of deletions,26193 +CNV SUMMARY,,Number of passing amplifications,26224,0.08 +CNV SUMMARY,,Number of passing deletions,129718,0.08 diff --git a/data/modules/dragen/PR1914/ItPY_9548_dragen.cnv_metrics.csv b/data/modules/dragen/PR1914/ItPY_9548_dragen.cnv_metrics.csv new file mode 100644 index 00000000..e3c60944 --- /dev/null +++ b/data/modules/dragen/PR1914/ItPY_9548_dragen.cnv_metrics.csv @@ -0,0 +1,15 @@ +SEX GENOTYPER,,ItPY_9548,XX,0.1514 +CNV SUMMARY,,Bases in reference genome,3091185076 +CNV SUMMARY,,Average alignment coverage over genome,0.26 +CNV SUMMARY,,Number of alignment records,3883890160 +CNV SUMMARY,,Number of filtered records (total),365570527,0.37 +CNV SUMMARY,,Number of filtered records (duplicates),4438,0.38 +CNV SUMMARY,,Number of filtered records (MAPQ),364116203,0.69 +CNV SUMMARY,,Number of filtered records (unmapped),308641074,0.67 +CNV SUMMARY,,Coverage uniformity,0.3 +CNV SUMMARY,,Number of target intervals,25858 +CNV SUMMARY,,Number of segments,2961 +CNV SUMMARY,,Number of amplifications,24568 +CNV SUMMARY,,Number of deletions,236274 +CNV SUMMARY,,Number of passing amplifications,10184,0.66 +CNV SUMMARY,,Number of passing deletions,123512,0.33 diff --git a/data/modules/dragen/PR1914/M_23586_dragen.cnv_metrics.csv b/data/modules/dragen/PR1914/M_23586_dragen.cnv_metrics.csv new file mode 100644 index 00000000..06143866 --- /dev/null +++ b/data/modules/dragen/PR1914/M_23586_dragen.cnv_metrics.csv @@ -0,0 +1,15 @@ +SEX GENOTYPER,,M_23586,XX,0.891 +CNV SUMMARY,,Bases in reference genome,3174825398 +CNV SUMMARY,,Average alignment coverage over genome,0.42 +CNV SUMMARY,,Number of alignment records,3270623625 +CNV SUMMARY,,Number of filtered records (total),352859156,0.35 +CNV SUMMARY,,Number of filtered records (duplicates),6628,0.56 +CNV SUMMARY,,Number of filtered records (MAPQ),365993713,0.16 +CNV SUMMARY,,Number of filtered records (unmapped),376902704,0.35 +CNV SUMMARY,,Coverage uniformity,0.47 +CNV SUMMARY,,Number of target intervals,8539 +CNV SUMMARY,,Number of segments,369 +CNV SUMMARY,,Number of amplifications,31157 +CNV SUMMARY,,Number of deletions,118630 +CNV SUMMARY,,Number of passing amplifications,16072,0.3 +CNV SUMMARY,,Number of passing deletions,183645,0.52 diff --git a/data/modules/dragen/PR1914/README.md b/data/modules/dragen/PR1914/README.md new file mode 100644 index 00000000..2b478cac --- /dev/null +++ b/data/modules/dragen/PR1914/README.md @@ -0,0 +1 @@ +Artificial \.cnv_metrics.csv files. diff --git a/data/modules/dragen/PR1914/W_341130_dragen.cnv_metrics.csv b/data/modules/dragen/PR1914/W_341130_dragen.cnv_metrics.csv new file mode 100644 index 00000000..c922131d --- /dev/null +++ b/data/modules/dragen/PR1914/W_341130_dragen.cnv_metrics.csv @@ -0,0 +1,15 @@ +SEX GENOTYPER,,W_341130,X0,0.5161 +CNV SUMMARY,,Bases in reference genome,3511517742 +CNV SUMMARY,,Average alignment coverage over genome,0.17 +CNV SUMMARY,,Number of alignment records,3316641322 +CNV SUMMARY,,Number of filtered records (total),325538350,0.49 +CNV SUMMARY,,Number of filtered records (duplicates),24971,0.84 +CNV SUMMARY,,Number of filtered records (MAPQ),325340694,0.16 +CNV SUMMARY,,Number of filtered records (unmapped),382238669,0.99 +CNV SUMMARY,,Coverage uniformity,0.78 +CNV SUMMARY,,Number of target intervals,35805 +CNV SUMMARY,,Number of segments,7608 +CNV SUMMARY,,Number of amplifications,36006 +CNV SUMMARY,,Number of deletions,107175 +CNV SUMMARY,,Number of passing amplifications,22939,0.43 +CNV SUMMARY,,Number of passing deletions,292406,0.48 diff --git a/data/modules/dragen/PR1914/atfQyN_4144_dragen.cnv_metrics.csv b/data/modules/dragen/PR1914/atfQyN_4144_dragen.cnv_metrics.csv new file mode 100644 index 00000000..4ea87e97 --- /dev/null +++ b/data/modules/dragen/PR1914/atfQyN_4144_dragen.cnv_metrics.csv @@ -0,0 +1,15 @@ +SEX GENOTYPER,,atfQyN_4144,XX,0.3914 +CNV SUMMARY,,Bases in reference genome,3907457211 +CNV SUMMARY,,Average alignment coverage over genome,0.7 +CNV SUMMARY,,Number of alignment records,3778076120 +CNV SUMMARY,,Number of filtered records (total),325332333,0.95 +CNV SUMMARY,,Number of filtered records (duplicates),31925,0.02 +CNV SUMMARY,,Number of filtered records (MAPQ),338832227,0.98 +CNV SUMMARY,,Number of filtered records (unmapped),362035172,0.32 +CNV SUMMARY,,Coverage uniformity,0.83 +CNV SUMMARY,,Number of target intervals,6252 +CNV SUMMARY,,Number of segments,10697 +CNV SUMMARY,,Number of amplifications,4915 +CNV SUMMARY,,Number of deletions,306601 +CNV SUMMARY,,Number of passing amplifications,36691,0.78 +CNV SUMMARY,,Number of passing deletions,378533,0.62 diff --git a/data/modules/dragen/PR1914/hRuEx_6_dragen.cnv_metrics.csv b/data/modules/dragen/PR1914/hRuEx_6_dragen.cnv_metrics.csv new file mode 100644 index 00000000..ce601254 --- /dev/null +++ b/data/modules/dragen/PR1914/hRuEx_6_dragen.cnv_metrics.csv @@ -0,0 +1,15 @@ +SEX GENOTYPER,,hRuEx_6,XX,0.4883 +CNV SUMMARY,,Bases in reference genome,3168627941 +CNV SUMMARY,,Average alignment coverage over genome,0.34 +CNV SUMMARY,,Number of alignment records,3881565611 +CNV SUMMARY,,Number of filtered records (total),327088361,0.87 +CNV SUMMARY,,Number of filtered records (duplicates),20621,0.04 +CNV SUMMARY,,Number of filtered records (MAPQ),371389810,0.85 +CNV SUMMARY,,Number of filtered records (unmapped),340918862,0.54 +CNV SUMMARY,,Coverage uniformity,0.99 +CNV SUMMARY,,Number of target intervals,1815 +CNV SUMMARY,,Number of segments,28022 +CNV SUMMARY,,Number of amplifications,30657 +CNV SUMMARY,,Number of deletions,89303 +CNV SUMMARY,,Number of passing amplifications,40000,0.18 +CNV SUMMARY,,Number of passing deletions,311814,0.4 diff --git a/data/modules/dragen/PR1914/iSr_996000_dragen.cnv_metrics.csv b/data/modules/dragen/PR1914/iSr_996000_dragen.cnv_metrics.csv new file mode 100644 index 00000000..ba93f622 --- /dev/null +++ b/data/modules/dragen/PR1914/iSr_996000_dragen.cnv_metrics.csv @@ -0,0 +1,15 @@ +SEX GENOTYPER,,iSr_996000,XXY,0.4333 +CNV SUMMARY,,Bases in reference genome,3420840379 +CNV SUMMARY,,Average alignment coverage over genome,0.65 +CNV SUMMARY,,Number of alignment records,3377942086 +CNV SUMMARY,,Number of filtered records (total),345844030,0.77 +CNV SUMMARY,,Number of filtered records (duplicates),32813,0.02 +CNV SUMMARY,,Number of filtered records (MAPQ),352646438,0.57 +CNV SUMMARY,,Number of filtered records (unmapped),312381644,0.29 +CNV SUMMARY,,Coverage uniformity,0.56 +CNV SUMMARY,,Number of target intervals,7951 +CNV SUMMARY,,Number of segments,3840 +CNV SUMMARY,,Number of amplifications,6406 +CNV SUMMARY,,Number of deletions,26975 +CNV SUMMARY,,Number of passing amplifications,32795,0.52 +CNV SUMMARY,,Number of passing deletions,126222,0.54 diff --git a/data/modules/dragen/PR1914/i_7482_dragen.cnv_metrics.csv b/data/modules/dragen/PR1914/i_7482_dragen.cnv_metrics.csv new file mode 100644 index 00000000..46ac1d77 --- /dev/null +++ b/data/modules/dragen/PR1914/i_7482_dragen.cnv_metrics.csv @@ -0,0 +1,15 @@ +SEX GENOTYPER,,i_7482,XX,0.4277 +CNV SUMMARY,,Bases in reference genome,3374282255 +CNV SUMMARY,,Average alignment coverage over genome,0.27 +CNV SUMMARY,,Number of alignment records,3327033510 +CNV SUMMARY,,Number of filtered records (total),337193226,0.25 +CNV SUMMARY,,Number of filtered records (duplicates),23361,0.87 +CNV SUMMARY,,Number of filtered records (MAPQ),325153478,0.59 +CNV SUMMARY,,Number of filtered records (unmapped),353559785,0.3 +CNV SUMMARY,,Coverage uniformity,0.6 +CNV SUMMARY,,Number of target intervals,29486 +CNV SUMMARY,,Number of segments,9334 +CNV SUMMARY,,Number of amplifications,1437 +CNV SUMMARY,,Number of deletions,187248 +CNV SUMMARY,,Number of passing amplifications,10810,0.8 +CNV SUMMARY,,Number of passing deletions,61541,0.51 diff --git a/data/modules/dragen/PR1914/t_957_dragen.cnv_metrics.csv b/data/modules/dragen/PR1914/t_957_dragen.cnv_metrics.csv new file mode 100644 index 00000000..ba56ae23 --- /dev/null +++ b/data/modules/dragen/PR1914/t_957_dragen.cnv_metrics.csv @@ -0,0 +1,15 @@ +SEX GENOTYPER,,t_957,XY,0.546 +CNV SUMMARY,,Bases in reference genome,3169469281 +CNV SUMMARY,,Average alignment coverage over genome,0.97 +CNV SUMMARY,,Number of alignment records,3506387218 +CNV SUMMARY,,Number of filtered records (total),374554089,0.48 +CNV SUMMARY,,Number of filtered records (duplicates),24718,0.57 +CNV SUMMARY,,Number of filtered records (MAPQ),352969827,0.01 +CNV SUMMARY,,Number of filtered records (unmapped),337874071,0.36 +CNV SUMMARY,,Coverage uniformity,0.71 +CNV SUMMARY,,Number of target intervals,15610 +CNV SUMMARY,,Number of segments,18338 +CNV SUMMARY,,Number of amplifications,19855 +CNV SUMMARY,,Number of deletions,277680 +CNV SUMMARY,,Number of passing amplifications,32360,0.72 +CNV SUMMARY,,Number of passing deletions,297424,0.83 diff --git a/data/modules/dragen/PR1914/uBBjPp_7049_dragen.cnv_metrics.csv b/data/modules/dragen/PR1914/uBBjPp_7049_dragen.cnv_metrics.csv new file mode 100644 index 00000000..44c16fe5 --- /dev/null +++ b/data/modules/dragen/PR1914/uBBjPp_7049_dragen.cnv_metrics.csv @@ -0,0 +1,15 @@ +SEX GENOTYPER,,uBBjPp_7049,YX,0.913 +CNV SUMMARY,,Bases in reference genome,3711634147 +CNV SUMMARY,,Average alignment coverage over genome,0.36 +CNV SUMMARY,,Number of alignment records,3919609183 +CNV SUMMARY,,Number of filtered records (total),351125892,0.46 +CNV SUMMARY,,Number of filtered records (duplicates),30715,0.0 +CNV SUMMARY,,Number of filtered records (MAPQ),366155083,0.28 +CNV SUMMARY,,Number of filtered records (unmapped),310153558,0.65 +CNV SUMMARY,,Coverage uniformity,0.17 +CNV SUMMARY,,Number of target intervals,22308 +CNV SUMMARY,,Number of segments,1035 +CNV SUMMARY,,Number of amplifications,11711 +CNV SUMMARY,,Number of deletions,368177 +CNV SUMMARY,,Number of passing amplifications,10174,0.28 +CNV SUMMARY,,Number of passing deletions,291262,0.52 diff --git a/data/modules/dragen/PR1915/AnW_30156_dragen.vc_hethom_ratio_metrics.csv b/data/modules/dragen/PR1915/AnW_30156_dragen.vc_hethom_ratio_metrics.csv new file mode 100644 index 00000000..04168ea0 --- /dev/null +++ b/data/modules/dragen/PR1915/AnW_30156_dragen.vc_hethom_ratio_metrics.csv @@ -0,0 +1,72 @@ +VARIANT CALLER POSTFILTER,AnW_30156,1 Heterozygous,196970 +VARIANT CALLER POSTFILTER,AnW_30156,1 Homozygous,151998 +VARIANT CALLER POSTFILTER,AnW_30156,1 Het/Hom ratio,1.295 +VARIANT CALLER POSTFILTER,AnW_30156,2 Heterozygous,149652 +VARIANT CALLER POSTFILTER,AnW_30156,2 Homozygous,195752 +VARIANT CALLER POSTFILTER,AnW_30156,2 Het/Hom ratio,0.764 +VARIANT CALLER POSTFILTER,AnW_30156,3 Heterozygous,148596 +VARIANT CALLER POSTFILTER,AnW_30156,3 Homozygous,100650 +VARIANT CALLER POSTFILTER,AnW_30156,3 Het/Hom ratio,1.476 +VARIANT CALLER POSTFILTER,AnW_30156,4 Heterozygous,151785 +VARIANT CALLER POSTFILTER,AnW_30156,4 Homozygous,141626 +VARIANT CALLER POSTFILTER,AnW_30156,4 Het/Hom ratio,1.071 +VARIANT CALLER POSTFILTER,AnW_30156,5 Heterozygous,147685 +VARIANT CALLER POSTFILTER,AnW_30156,5 Homozygous,144076 +VARIANT CALLER POSTFILTER,AnW_30156,5 Het/Hom ratio,1.025 +VARIANT CALLER POSTFILTER,AnW_30156,6 Heterozygous,120779 +VARIANT CALLER POSTFILTER,AnW_30156,6 Homozygous,170649 +VARIANT CALLER POSTFILTER,AnW_30156,6 Het/Hom ratio,0.707 +VARIANT CALLER POSTFILTER,AnW_30156,7 Heterozygous,156096 +VARIANT CALLER POSTFILTER,AnW_30156,7 Homozygous,130217 +VARIANT CALLER POSTFILTER,AnW_30156,7 Het/Hom ratio,1.198 +VARIANT CALLER POSTFILTER,AnW_30156,8 Heterozygous,167480 +VARIANT CALLER POSTFILTER,AnW_30156,8 Homozygous,138030 +VARIANT CALLER POSTFILTER,AnW_30156,8 Het/Hom ratio,1.213 +VARIANT CALLER POSTFILTER,AnW_30156,9 Heterozygous,192101 +VARIANT CALLER POSTFILTER,AnW_30156,9 Homozygous,185549 +VARIANT CALLER POSTFILTER,AnW_30156,9 Het/Hom ratio,1.035 +VARIANT CALLER POSTFILTER,AnW_30156,10 Heterozygous,121476 +VARIANT CALLER POSTFILTER,AnW_30156,10 Homozygous,124495 +VARIANT CALLER POSTFILTER,AnW_30156,10 Het/Hom ratio,0.975 +VARIANT CALLER POSTFILTER,AnW_30156,11 Heterozygous,193031 +VARIANT CALLER POSTFILTER,AnW_30156,11 Homozygous,161119 +VARIANT CALLER POSTFILTER,AnW_30156,11 Het/Hom ratio,1.198 +VARIANT CALLER POSTFILTER,AnW_30156,12 Heterozygous,105822 +VARIANT CALLER POSTFILTER,AnW_30156,12 Homozygous,101704 +VARIANT CALLER POSTFILTER,AnW_30156,12 Het/Hom ratio,1.040 +VARIANT CALLER POSTFILTER,AnW_30156,13 Heterozygous,151722 +VARIANT CALLER POSTFILTER,AnW_30156,13 Homozygous,129429 +VARIANT CALLER POSTFILTER,AnW_30156,13 Het/Hom ratio,1.172 +VARIANT CALLER POSTFILTER,AnW_30156,14 Heterozygous,189397 +VARIANT CALLER POSTFILTER,AnW_30156,14 Homozygous,163758 +VARIANT CALLER POSTFILTER,AnW_30156,14 Het/Hom ratio,1.156 +VARIANT CALLER POSTFILTER,AnW_30156,15 Heterozygous,182651 +VARIANT CALLER POSTFILTER,AnW_30156,15 Homozygous,165024 +VARIANT CALLER POSTFILTER,AnW_30156,15 Het/Hom ratio,1.106 +VARIANT CALLER POSTFILTER,AnW_30156,16 Heterozygous,103344 +VARIANT CALLER POSTFILTER,AnW_30156,16 Homozygous,120828 +VARIANT CALLER POSTFILTER,AnW_30156,16 Het/Hom ratio,0.855 +VARIANT CALLER POSTFILTER,AnW_30156,17 Heterozygous,128400 +VARIANT CALLER POSTFILTER,AnW_30156,17 Homozygous,119256 +VARIANT CALLER POSTFILTER,AnW_30156,17 Het/Hom ratio,1.076 +VARIANT CALLER POSTFILTER,AnW_30156,18 Heterozygous,112854 +VARIANT CALLER POSTFILTER,AnW_30156,18 Homozygous,165562 +VARIANT CALLER POSTFILTER,AnW_30156,18 Het/Hom ratio,0.681 +VARIANT CALLER POSTFILTER,AnW_30156,19 Heterozygous,115493 +VARIANT CALLER POSTFILTER,AnW_30156,19 Homozygous,169413 +VARIANT CALLER POSTFILTER,AnW_30156,19 Het/Hom ratio,0.681 +VARIANT CALLER POSTFILTER,AnW_30156,20 Heterozygous,160571 +VARIANT CALLER POSTFILTER,AnW_30156,20 Homozygous,186513 +VARIANT CALLER POSTFILTER,AnW_30156,20 Het/Hom ratio,0.860 +VARIANT CALLER POSTFILTER,AnW_30156,21 Heterozygous,121928 +VARIANT CALLER POSTFILTER,AnW_30156,21 Homozygous,131917 +VARIANT CALLER POSTFILTER,AnW_30156,21 Het/Hom ratio,0.924 +VARIANT CALLER POSTFILTER,AnW_30156,22 Heterozygous,130583 +VARIANT CALLER POSTFILTER,AnW_30156,22 Homozygous,146406 +VARIANT CALLER POSTFILTER,AnW_30156,22 Het/Hom ratio,0.891 +VARIANT CALLER POSTFILTER,AnW_30156,X Heterozygous,154359 +VARIANT CALLER POSTFILTER,AnW_30156,X Homozygous,181340 +VARIANT CALLER POSTFILTER,AnW_30156,X Het/Hom ratio,0.851 +VARIANT CALLER POSTFILTER,AnW_30156,Y Heterozygous,0 +VARIANT CALLER POSTFILTER,AnW_30156,Y Homozygous,0 +VARIANT CALLER POSTFILTER,AnW_30156,Y Het/Hom ratio,inf diff --git a/data/modules/dragen/PR1915/CWpn_4499_dragen.vc_hethom_ratio_metrics.csv b/data/modules/dragen/PR1915/CWpn_4499_dragen.vc_hethom_ratio_metrics.csv new file mode 100644 index 00000000..62435aa2 --- /dev/null +++ b/data/modules/dragen/PR1915/CWpn_4499_dragen.vc_hethom_ratio_metrics.csv @@ -0,0 +1,432 @@ +JOINT CALLER PREFILTER,CWpn_4499,1 Heterozygous,163987 +JOINT CALLER PREFILTER,CWpn_4499,1 Homozygous,128501 +JOINT CALLER PREFILTER,CWpn_4499,1 Het/Hom ratio,1.276 +JOINT CALLER PREFILTER,CWpn_4499,2 Heterozygous,119423 +JOINT CALLER PREFILTER,CWpn_4499,2 Homozygous,146663 +JOINT CALLER PREFILTER,CWpn_4499,2 Het/Hom ratio,0.814 +JOINT CALLER PREFILTER,CWpn_4499,3 Heterozygous,147944 +JOINT CALLER PREFILTER,CWpn_4499,3 Homozygous,133540 +JOINT CALLER PREFILTER,CWpn_4499,3 Het/Hom ratio,1.107 +JOINT CALLER PREFILTER,CWpn_4499,4 Heterozygous,133053 +JOINT CALLER PREFILTER,CWpn_4499,4 Homozygous,160178 +JOINT CALLER PREFILTER,CWpn_4499,4 Het/Hom ratio,0.830 +JOINT CALLER PREFILTER,CWpn_4499,5 Heterozygous,135774 +JOINT CALLER PREFILTER,CWpn_4499,5 Homozygous,126264 +JOINT CALLER PREFILTER,CWpn_4499,5 Het/Hom ratio,1.075 +JOINT CALLER PREFILTER,CWpn_4499,6 Heterozygous,104792 +JOINT CALLER PREFILTER,CWpn_4499,6 Homozygous,164262 +JOINT CALLER PREFILTER,CWpn_4499,6 Het/Hom ratio,0.637 +JOINT CALLER PREFILTER,CWpn_4499,7 Heterozygous,127920 +JOINT CALLER PREFILTER,CWpn_4499,7 Homozygous,112228 +JOINT CALLER PREFILTER,CWpn_4499,7 Het/Hom ratio,1.139 +JOINT CALLER PREFILTER,CWpn_4499,8 Heterozygous,170221 +JOINT CALLER PREFILTER,CWpn_4499,8 Homozygous,152665 +JOINT CALLER PREFILTER,CWpn_4499,8 Het/Hom ratio,1.114 +JOINT CALLER PREFILTER,CWpn_4499,9 Heterozygous,124868 +JOINT CALLER PREFILTER,CWpn_4499,9 Homozygous,140310 +JOINT CALLER PREFILTER,CWpn_4499,9 Het/Hom ratio,0.889 +JOINT CALLER PREFILTER,CWpn_4499,10 Heterozygous,175099 +JOINT CALLER PREFILTER,CWpn_4499,10 Homozygous,156229 +JOINT CALLER PREFILTER,CWpn_4499,10 Het/Hom ratio,1.120 +JOINT CALLER PREFILTER,CWpn_4499,11 Heterozygous,167609 +JOINT CALLER PREFILTER,CWpn_4499,11 Homozygous,104638 +JOINT CALLER PREFILTER,CWpn_4499,11 Het/Hom ratio,1.601 +JOINT CALLER PREFILTER,CWpn_4499,12 Heterozygous,126878 +JOINT CALLER PREFILTER,CWpn_4499,12 Homozygous,117093 +JOINT CALLER PREFILTER,CWpn_4499,12 Het/Hom ratio,1.083 +JOINT CALLER PREFILTER,CWpn_4499,13 Heterozygous,193144 +JOINT CALLER PREFILTER,CWpn_4499,13 Homozygous,107409 +JOINT CALLER PREFILTER,CWpn_4499,13 Het/Hom ratio,1.798 +JOINT CALLER PREFILTER,CWpn_4499,14 Heterozygous,171704 +JOINT CALLER PREFILTER,CWpn_4499,14 Homozygous,148177 +JOINT CALLER PREFILTER,CWpn_4499,14 Het/Hom ratio,1.158 +JOINT CALLER PREFILTER,CWpn_4499,15 Heterozygous,107116 +JOINT CALLER PREFILTER,CWpn_4499,15 Homozygous,135055 +JOINT CALLER PREFILTER,CWpn_4499,15 Het/Hom ratio,0.793 +JOINT CALLER PREFILTER,CWpn_4499,16 Heterozygous,104428 +JOINT CALLER PREFILTER,CWpn_4499,16 Homozygous,125442 +JOINT CALLER PREFILTER,CWpn_4499,16 Het/Hom ratio,0.832 +JOINT CALLER PREFILTER,CWpn_4499,17 Heterozygous,145707 +JOINT CALLER PREFILTER,CWpn_4499,17 Homozygous,137229 +JOINT CALLER PREFILTER,CWpn_4499,17 Het/Hom ratio,1.061 +JOINT CALLER PREFILTER,CWpn_4499,18 Heterozygous,154561 +JOINT CALLER PREFILTER,CWpn_4499,18 Homozygous,198743 +JOINT CALLER PREFILTER,CWpn_4499,18 Het/Hom ratio,0.777 +JOINT CALLER PREFILTER,CWpn_4499,19 Heterozygous,104830 +JOINT CALLER PREFILTER,CWpn_4499,19 Homozygous,123571 +JOINT CALLER PREFILTER,CWpn_4499,19 Het/Hom ratio,0.848 +JOINT CALLER PREFILTER,CWpn_4499,20 Heterozygous,153854 +JOINT CALLER PREFILTER,CWpn_4499,20 Homozygous,164449 +JOINT CALLER PREFILTER,CWpn_4499,20 Het/Hom ratio,0.935 +JOINT CALLER PREFILTER,CWpn_4499,21 Heterozygous,118980 +JOINT CALLER PREFILTER,CWpn_4499,21 Homozygous,148636 +JOINT CALLER PREFILTER,CWpn_4499,21 Het/Hom ratio,0.800 +JOINT CALLER PREFILTER,CWpn_4499,22 Heterozygous,125863 +JOINT CALLER PREFILTER,CWpn_4499,22 Homozygous,120493 +JOINT CALLER PREFILTER,CWpn_4499,22 Het/Hom ratio,1.044 +JOINT CALLER PREFILTER,CWpn_4499,X Heterozygous,8675 +JOINT CALLER PREFILTER,CWpn_4499,X Homozygous,347 +JOINT CALLER PREFILTER,CWpn_4499,X Het/Hom ratio,25.00 +JOINT CALLER PREFILTER,CWpn_4499,Y Heterozygous,143743 +JOINT CALLER PREFILTER,CWpn_4499,Y Homozygous,0 +JOINT CALLER PREFILTER,CWpn_4499,Y Het/Hom ratio,inf +JOINT CALLER POSTFILTER,CWpn_4499,1 Heterozygous,183103 +JOINT CALLER POSTFILTER,CWpn_4499,1 Homozygous,110876 +JOINT CALLER POSTFILTER,CWpn_4499,1 Het/Hom ratio,1.651 +JOINT CALLER POSTFILTER,CWpn_4499,2 Heterozygous,111353 +JOINT CALLER POSTFILTER,CWpn_4499,2 Homozygous,162922 +JOINT CALLER POSTFILTER,CWpn_4499,2 Het/Hom ratio,0.683 +JOINT CALLER POSTFILTER,CWpn_4499,3 Heterozygous,195220 +JOINT CALLER POSTFILTER,CWpn_4499,3 Homozygous,152773 +JOINT CALLER POSTFILTER,CWpn_4499,3 Het/Hom ratio,1.277 +JOINT CALLER POSTFILTER,CWpn_4499,4 Heterozygous,166465 +JOINT CALLER POSTFILTER,CWpn_4499,4 Homozygous,153906 +JOINT CALLER POSTFILTER,CWpn_4499,4 Het/Hom ratio,1.081 +JOINT CALLER POSTFILTER,CWpn_4499,5 Heterozygous,195261 +JOINT CALLER POSTFILTER,CWpn_4499,5 Homozygous,109970 +JOINT CALLER POSTFILTER,CWpn_4499,5 Het/Hom ratio,1.775 +JOINT CALLER POSTFILTER,CWpn_4499,6 Heterozygous,181731 +JOINT CALLER POSTFILTER,CWpn_4499,6 Homozygous,135459 +JOINT CALLER POSTFILTER,CWpn_4499,6 Het/Hom ratio,1.341 +JOINT CALLER POSTFILTER,CWpn_4499,7 Heterozygous,107180 +JOINT CALLER POSTFILTER,CWpn_4499,7 Homozygous,128888 +JOINT CALLER POSTFILTER,CWpn_4499,7 Het/Hom ratio,0.831 +JOINT CALLER POSTFILTER,CWpn_4499,8 Heterozygous,171715 +JOINT CALLER POSTFILTER,CWpn_4499,8 Homozygous,141768 +JOINT CALLER POSTFILTER,CWpn_4499,8 Het/Hom ratio,1.211 +JOINT CALLER POSTFILTER,CWpn_4499,9 Heterozygous,103541 +JOINT CALLER POSTFILTER,CWpn_4499,9 Homozygous,110747 +JOINT CALLER POSTFILTER,CWpn_4499,9 Het/Hom ratio,0.934 +JOINT CALLER POSTFILTER,CWpn_4499,10 Heterozygous,171299 +JOINT CALLER POSTFILTER,CWpn_4499,10 Homozygous,126029 +JOINT CALLER POSTFILTER,CWpn_4499,10 Het/Hom ratio,1.359 +JOINT CALLER POSTFILTER,CWpn_4499,11 Heterozygous,107898 +JOINT CALLER POSTFILTER,CWpn_4499,11 Homozygous,170262 +JOINT CALLER POSTFILTER,CWpn_4499,11 Het/Hom ratio,0.633 +JOINT CALLER POSTFILTER,CWpn_4499,12 Heterozygous,193865 +JOINT CALLER POSTFILTER,CWpn_4499,12 Homozygous,194672 +JOINT CALLER POSTFILTER,CWpn_4499,12 Het/Hom ratio,0.995 +JOINT CALLER POSTFILTER,CWpn_4499,13 Heterozygous,107517 +JOINT CALLER POSTFILTER,CWpn_4499,13 Homozygous,156240 +JOINT CALLER POSTFILTER,CWpn_4499,13 Het/Hom ratio,0.688 +JOINT CALLER POSTFILTER,CWpn_4499,14 Heterozygous,188305 +JOINT CALLER POSTFILTER,CWpn_4499,14 Homozygous,185088 +JOINT CALLER POSTFILTER,CWpn_4499,14 Het/Hom ratio,1.017 +JOINT CALLER POSTFILTER,CWpn_4499,15 Heterozygous,111666 +JOINT CALLER POSTFILTER,CWpn_4499,15 Homozygous,122965 +JOINT CALLER POSTFILTER,CWpn_4499,15 Het/Hom ratio,0.908 +JOINT CALLER POSTFILTER,CWpn_4499,16 Heterozygous,193277 +JOINT CALLER POSTFILTER,CWpn_4499,16 Homozygous,181549 +JOINT CALLER POSTFILTER,CWpn_4499,16 Het/Hom ratio,1.064 +JOINT CALLER POSTFILTER,CWpn_4499,17 Heterozygous,194910 +JOINT CALLER POSTFILTER,CWpn_4499,17 Homozygous,192145 +JOINT CALLER POSTFILTER,CWpn_4499,17 Het/Hom ratio,1.014 +JOINT CALLER POSTFILTER,CWpn_4499,18 Heterozygous,165155 +JOINT CALLER POSTFILTER,CWpn_4499,18 Homozygous,141823 +JOINT CALLER POSTFILTER,CWpn_4499,18 Het/Hom ratio,1.164 +JOINT CALLER POSTFILTER,CWpn_4499,19 Heterozygous,118701 +JOINT CALLER POSTFILTER,CWpn_4499,19 Homozygous,199505 +JOINT CALLER POSTFILTER,CWpn_4499,19 Het/Hom ratio,0.594 +JOINT CALLER POSTFILTER,CWpn_4499,20 Heterozygous,184500 +JOINT CALLER POSTFILTER,CWpn_4499,20 Homozygous,156018 +JOINT CALLER POSTFILTER,CWpn_4499,20 Het/Hom ratio,1.182 +JOINT CALLER POSTFILTER,CWpn_4499,21 Heterozygous,167530 +JOINT CALLER POSTFILTER,CWpn_4499,21 Homozygous,120132 +JOINT CALLER POSTFILTER,CWpn_4499,21 Het/Hom ratio,1.394 +JOINT CALLER POSTFILTER,CWpn_4499,22 Heterozygous,198075 +JOINT CALLER POSTFILTER,CWpn_4499,22 Homozygous,187428 +JOINT CALLER POSTFILTER,CWpn_4499,22 Het/Hom ratio,1.056 +JOINT CALLER POSTFILTER,CWpn_4499,X Heterozygous,162071 +JOINT CALLER POSTFILTER,CWpn_4499,X Homozygous,118697 +JOINT CALLER POSTFILTER,CWpn_4499,X Het/Hom ratio,1.365 +JOINT CALLER POSTFILTER,CWpn_4499,Y Heterozygous,104477 +JOINT CALLER POSTFILTER,CWpn_4499,Y Homozygous,140401 +JOINT CALLER POSTFILTER,CWpn_4499,Y Het/Hom ratio,0.744 +JOINT CALLER PREFILTER,jyqRVl_2374,1 Heterozygous,185000 +JOINT CALLER PREFILTER,jyqRVl_2374,1 Homozygous,189571 +JOINT CALLER PREFILTER,jyqRVl_2374,1 Het/Hom ratio,0.975 +JOINT CALLER PREFILTER,jyqRVl_2374,2 Heterozygous,191068 +JOINT CALLER PREFILTER,jyqRVl_2374,2 Homozygous,146059 +JOINT CALLER PREFILTER,jyqRVl_2374,2 Het/Hom ratio,1.308 +JOINT CALLER PREFILTER,jyqRVl_2374,3 Heterozygous,137040 +JOINT CALLER PREFILTER,jyqRVl_2374,3 Homozygous,112532 +JOINT CALLER PREFILTER,jyqRVl_2374,3 Het/Hom ratio,1.217 +JOINT CALLER PREFILTER,jyqRVl_2374,4 Heterozygous,109404 +JOINT CALLER PREFILTER,jyqRVl_2374,4 Homozygous,175010 +JOINT CALLER PREFILTER,jyqRVl_2374,4 Het/Hom ratio,0.625 +JOINT CALLER PREFILTER,jyqRVl_2374,5 Heterozygous,158292 +JOINT CALLER PREFILTER,jyqRVl_2374,5 Homozygous,158533 +JOINT CALLER PREFILTER,jyqRVl_2374,5 Het/Hom ratio,0.998 +JOINT CALLER PREFILTER,jyqRVl_2374,6 Heterozygous,172451 +JOINT CALLER PREFILTER,jyqRVl_2374,6 Homozygous,163310 +JOINT CALLER PREFILTER,jyqRVl_2374,6 Het/Hom ratio,1.055 +JOINT CALLER PREFILTER,jyqRVl_2374,7 Heterozygous,177215 +JOINT CALLER PREFILTER,jyqRVl_2374,7 Homozygous,156771 +JOINT CALLER PREFILTER,jyqRVl_2374,7 Het/Hom ratio,1.130 +JOINT CALLER PREFILTER,jyqRVl_2374,8 Heterozygous,150101 +JOINT CALLER PREFILTER,jyqRVl_2374,8 Homozygous,127459 +JOINT CALLER PREFILTER,jyqRVl_2374,8 Het/Hom ratio,1.177 +JOINT CALLER PREFILTER,jyqRVl_2374,9 Heterozygous,174393 +JOINT CALLER PREFILTER,jyqRVl_2374,9 Homozygous,192776 +JOINT CALLER PREFILTER,jyqRVl_2374,9 Het/Hom ratio,0.904 +JOINT CALLER PREFILTER,jyqRVl_2374,10 Heterozygous,190512 +JOINT CALLER PREFILTER,jyqRVl_2374,10 Homozygous,156266 +JOINT CALLER PREFILTER,jyqRVl_2374,10 Het/Hom ratio,1.219 +JOINT CALLER PREFILTER,jyqRVl_2374,11 Heterozygous,164957 +JOINT CALLER PREFILTER,jyqRVl_2374,11 Homozygous,147575 +JOINT CALLER PREFILTER,jyqRVl_2374,11 Het/Hom ratio,1.117 +JOINT CALLER PREFILTER,jyqRVl_2374,12 Heterozygous,138990 +JOINT CALLER PREFILTER,jyqRVl_2374,12 Homozygous,109752 +JOINT CALLER PREFILTER,jyqRVl_2374,12 Het/Hom ratio,1.266 +JOINT CALLER PREFILTER,jyqRVl_2374,13 Heterozygous,177180 +JOINT CALLER PREFILTER,jyqRVl_2374,13 Homozygous,137170 +JOINT CALLER PREFILTER,jyqRVl_2374,13 Het/Hom ratio,1.291 +JOINT CALLER PREFILTER,jyqRVl_2374,14 Heterozygous,163774 +JOINT CALLER PREFILTER,jyqRVl_2374,14 Homozygous,165074 +JOINT CALLER PREFILTER,jyqRVl_2374,14 Het/Hom ratio,0.992 +JOINT CALLER PREFILTER,jyqRVl_2374,15 Heterozygous,118965 +JOINT CALLER PREFILTER,jyqRVl_2374,15 Homozygous,115340 +JOINT CALLER PREFILTER,jyqRVl_2374,15 Het/Hom ratio,1.031 +JOINT CALLER PREFILTER,jyqRVl_2374,16 Heterozygous,102809 +JOINT CALLER PREFILTER,jyqRVl_2374,16 Homozygous,180819 +JOINT CALLER PREFILTER,jyqRVl_2374,16 Het/Hom ratio,0.568 +JOINT CALLER PREFILTER,jyqRVl_2374,17 Heterozygous,143508 +JOINT CALLER PREFILTER,jyqRVl_2374,17 Homozygous,166236 +JOINT CALLER PREFILTER,jyqRVl_2374,17 Het/Hom ratio,0.863 +JOINT CALLER PREFILTER,jyqRVl_2374,18 Heterozygous,127697 +JOINT CALLER PREFILTER,jyqRVl_2374,18 Homozygous,112562 +JOINT CALLER PREFILTER,jyqRVl_2374,18 Het/Hom ratio,1.134 +JOINT CALLER PREFILTER,jyqRVl_2374,19 Heterozygous,172277 +JOINT CALLER PREFILTER,jyqRVl_2374,19 Homozygous,195233 +JOINT CALLER PREFILTER,jyqRVl_2374,19 Het/Hom ratio,0.882 +JOINT CALLER PREFILTER,jyqRVl_2374,20 Heterozygous,189494 +JOINT CALLER PREFILTER,jyqRVl_2374,20 Homozygous,180705 +JOINT CALLER PREFILTER,jyqRVl_2374,20 Het/Hom ratio,1.048 +JOINT CALLER PREFILTER,jyqRVl_2374,21 Heterozygous,196656 +JOINT CALLER PREFILTER,jyqRVl_2374,21 Homozygous,148246 +JOINT CALLER PREFILTER,jyqRVl_2374,21 Het/Hom ratio,1.326 +JOINT CALLER PREFILTER,jyqRVl_2374,22 Heterozygous,145729 +JOINT CALLER PREFILTER,jyqRVl_2374,22 Homozygous,180052 +JOINT CALLER PREFILTER,jyqRVl_2374,22 Het/Hom ratio,0.809 +JOINT CALLER PREFILTER,jyqRVl_2374,X Heterozygous,109258 +JOINT CALLER PREFILTER,jyqRVl_2374,X Homozygous,129571 +JOINT CALLER PREFILTER,jyqRVl_2374,X Het/Hom ratio,0.843 +JOINT CALLER PREFILTER,jyqRVl_2374,Y Heterozygous,121458 +JOINT CALLER PREFILTER,jyqRVl_2374,Y Homozygous,180356 +JOINT CALLER PREFILTER,jyqRVl_2374,Y Het/Hom ratio,0.673 +JOINT CALLER POSTFILTER,jyqRVl_2374,1 Heterozygous,184102 +JOINT CALLER POSTFILTER,jyqRVl_2374,1 Homozygous,168692 +JOINT CALLER POSTFILTER,jyqRVl_2374,1 Het/Hom ratio,1.091 +JOINT CALLER POSTFILTER,jyqRVl_2374,2 Heterozygous,125527 +JOINT CALLER POSTFILTER,jyqRVl_2374,2 Homozygous,194876 +JOINT CALLER POSTFILTER,jyqRVl_2374,2 Het/Hom ratio,0.644 +JOINT CALLER POSTFILTER,jyqRVl_2374,3 Heterozygous,115576 +JOINT CALLER POSTFILTER,jyqRVl_2374,3 Homozygous,192126 +JOINT CALLER POSTFILTER,jyqRVl_2374,3 Het/Hom ratio,0.601 +JOINT CALLER POSTFILTER,jyqRVl_2374,4 Heterozygous,154695 +JOINT CALLER POSTFILTER,jyqRVl_2374,4 Homozygous,127946 +JOINT CALLER POSTFILTER,jyqRVl_2374,4 Het/Hom ratio,1.209 +JOINT CALLER POSTFILTER,jyqRVl_2374,5 Heterozygous,190992 +JOINT CALLER POSTFILTER,jyqRVl_2374,5 Homozygous,176387 +JOINT CALLER POSTFILTER,jyqRVl_2374,5 Het/Hom ratio,1.082 +JOINT CALLER POSTFILTER,jyqRVl_2374,6 Heterozygous,199835 +JOINT CALLER POSTFILTER,jyqRVl_2374,6 Homozygous,178132 +JOINT CALLER POSTFILTER,jyqRVl_2374,6 Het/Hom ratio,1.121 +JOINT CALLER POSTFILTER,jyqRVl_2374,7 Heterozygous,144667 +JOINT CALLER POSTFILTER,jyqRVl_2374,7 Homozygous,115583 +JOINT CALLER POSTFILTER,jyqRVl_2374,7 Het/Hom ratio,1.251 +JOINT CALLER POSTFILTER,jyqRVl_2374,8 Heterozygous,115550 +JOINT CALLER POSTFILTER,jyqRVl_2374,8 Homozygous,170768 +JOINT CALLER POSTFILTER,jyqRVl_2374,8 Het/Hom ratio,0.676 +JOINT CALLER POSTFILTER,jyqRVl_2374,9 Heterozygous,132335 +JOINT CALLER POSTFILTER,jyqRVl_2374,9 Homozygous,135879 +JOINT CALLER POSTFILTER,jyqRVl_2374,9 Het/Hom ratio,0.973 +JOINT CALLER POSTFILTER,jyqRVl_2374,10 Heterozygous,146716 +JOINT CALLER POSTFILTER,jyqRVl_2374,10 Homozygous,171981 +JOINT CALLER POSTFILTER,jyqRVl_2374,10 Het/Hom ratio,0.853 +JOINT CALLER POSTFILTER,jyqRVl_2374,11 Heterozygous,102607 +JOINT CALLER POSTFILTER,jyqRVl_2374,11 Homozygous,138285 +JOINT CALLER POSTFILTER,jyqRVl_2374,11 Het/Hom ratio,0.741 +JOINT CALLER POSTFILTER,jyqRVl_2374,12 Heterozygous,196860 +JOINT CALLER POSTFILTER,jyqRVl_2374,12 Homozygous,145072 +JOINT CALLER POSTFILTER,jyqRVl_2374,12 Het/Hom ratio,1.356 +JOINT CALLER POSTFILTER,jyqRVl_2374,13 Heterozygous,107453 +JOINT CALLER POSTFILTER,jyqRVl_2374,13 Homozygous,178048 +JOINT CALLER POSTFILTER,jyqRVl_2374,13 Het/Hom ratio,0.603 +JOINT CALLER POSTFILTER,jyqRVl_2374,14 Heterozygous,190999 +JOINT CALLER POSTFILTER,jyqRVl_2374,14 Homozygous,183576 +JOINT CALLER POSTFILTER,jyqRVl_2374,14 Het/Hom ratio,1.040 +JOINT CALLER POSTFILTER,jyqRVl_2374,15 Heterozygous,100516 +JOINT CALLER POSTFILTER,jyqRVl_2374,15 Homozygous,145535 +JOINT CALLER POSTFILTER,jyqRVl_2374,15 Het/Hom ratio,0.690 +JOINT CALLER POSTFILTER,jyqRVl_2374,16 Heterozygous,115650 +JOINT CALLER POSTFILTER,jyqRVl_2374,16 Homozygous,142429 +JOINT CALLER POSTFILTER,jyqRVl_2374,16 Het/Hom ratio,0.811 +JOINT CALLER POSTFILTER,jyqRVl_2374,17 Heterozygous,146345 +JOINT CALLER POSTFILTER,jyqRVl_2374,17 Homozygous,130054 +JOINT CALLER POSTFILTER,jyqRVl_2374,17 Het/Hom ratio,1.125 +JOINT CALLER POSTFILTER,jyqRVl_2374,18 Heterozygous,163125 +JOINT CALLER POSTFILTER,jyqRVl_2374,18 Homozygous,170390 +JOINT CALLER POSTFILTER,jyqRVl_2374,18 Het/Hom ratio,0.957 +JOINT CALLER POSTFILTER,jyqRVl_2374,19 Heterozygous,162863 +JOINT CALLER POSTFILTER,jyqRVl_2374,19 Homozygous,102836 +JOINT CALLER POSTFILTER,jyqRVl_2374,19 Het/Hom ratio,1.583 +JOINT CALLER POSTFILTER,jyqRVl_2374,20 Heterozygous,178898 +JOINT CALLER POSTFILTER,jyqRVl_2374,20 Homozygous,153898 +JOINT CALLER POSTFILTER,jyqRVl_2374,20 Het/Hom ratio,1.162 +JOINT CALLER POSTFILTER,jyqRVl_2374,21 Heterozygous,173861 +JOINT CALLER POSTFILTER,jyqRVl_2374,21 Homozygous,187626 +JOINT CALLER POSTFILTER,jyqRVl_2374,21 Het/Hom ratio,0.926 +JOINT CALLER POSTFILTER,jyqRVl_2374,22 Heterozygous,151407 +JOINT CALLER POSTFILTER,jyqRVl_2374,22 Homozygous,189537 +JOINT CALLER POSTFILTER,jyqRVl_2374,22 Het/Hom ratio,0.798 +JOINT CALLER POSTFILTER,jyqRVl_2374,X Heterozygous,172034 +JOINT CALLER POSTFILTER,jyqRVl_2374,X Homozygous,119898 +JOINT CALLER POSTFILTER,jyqRVl_2374,X Het/Hom ratio,1.434 +JOINT CALLER POSTFILTER,jyqRVl_2374,Y Heterozygous,190040 +JOINT CALLER POSTFILTER,jyqRVl_2374,Y Homozygous,114461 +JOINT CALLER POSTFILTER,jyqRVl_2374,Y Het/Hom ratio,1.660 +JOINT CALLER PREFILTER,UuLnQw_3810,1 Heterozygous,154595 +JOINT CALLER PREFILTER,UuLnQw_3810,1 Homozygous,166050 +JOINT CALLER PREFILTER,UuLnQw_3810,1 Het/Hom ratio,0.931 +JOINT CALLER PREFILTER,UuLnQw_3810,2 Heterozygous,147554 +JOINT CALLER PREFILTER,UuLnQw_3810,2 Homozygous,197254 +JOINT CALLER PREFILTER,UuLnQw_3810,2 Het/Hom ratio,0.748 +JOINT CALLER PREFILTER,UuLnQw_3810,3 Heterozygous,120015 +JOINT CALLER PREFILTER,UuLnQw_3810,3 Homozygous,127448 +JOINT CALLER PREFILTER,UuLnQw_3810,3 Het/Hom ratio,0.941 +JOINT CALLER PREFILTER,UuLnQw_3810,4 Heterozygous,157148 +JOINT CALLER PREFILTER,UuLnQw_3810,4 Homozygous,192287 +JOINT CALLER PREFILTER,UuLnQw_3810,4 Het/Hom ratio,0.817 +JOINT CALLER PREFILTER,UuLnQw_3810,5 Heterozygous,167428 +JOINT CALLER PREFILTER,UuLnQw_3810,5 Homozygous,126017 +JOINT CALLER PREFILTER,UuLnQw_3810,5 Het/Hom ratio,1.328 +JOINT CALLER PREFILTER,UuLnQw_3810,6 Heterozygous,192140 +JOINT CALLER PREFILTER,UuLnQw_3810,6 Homozygous,169164 +JOINT CALLER PREFILTER,UuLnQw_3810,6 Het/Hom ratio,1.135 +JOINT CALLER PREFILTER,UuLnQw_3810,7 Heterozygous,198912 +JOINT CALLER PREFILTER,UuLnQw_3810,7 Homozygous,165689 +JOINT CALLER PREFILTER,UuLnQw_3810,7 Het/Hom ratio,1.200 +JOINT CALLER PREFILTER,UuLnQw_3810,8 Heterozygous,104074 +JOINT CALLER PREFILTER,UuLnQw_3810,8 Homozygous,181244 +JOINT CALLER PREFILTER,UuLnQw_3810,8 Het/Hom ratio,0.574 +JOINT CALLER PREFILTER,UuLnQw_3810,9 Heterozygous,134775 +JOINT CALLER PREFILTER,UuLnQw_3810,9 Homozygous,135300 +JOINT CALLER PREFILTER,UuLnQw_3810,9 Het/Hom ratio,0.996 +JOINT CALLER PREFILTER,UuLnQw_3810,10 Heterozygous,189117 +JOINT CALLER PREFILTER,UuLnQw_3810,10 Homozygous,131322 +JOINT CALLER PREFILTER,UuLnQw_3810,10 Het/Hom ratio,1.440 +JOINT CALLER PREFILTER,UuLnQw_3810,11 Heterozygous,122639 +JOINT CALLER PREFILTER,UuLnQw_3810,11 Homozygous,113474 +JOINT CALLER PREFILTER,UuLnQw_3810,11 Het/Hom ratio,1.080 +JOINT CALLER PREFILTER,UuLnQw_3810,12 Heterozygous,125289 +JOINT CALLER PREFILTER,UuLnQw_3810,12 Homozygous,144566 +JOINT CALLER PREFILTER,UuLnQw_3810,12 Het/Hom ratio,0.866 +JOINT CALLER PREFILTER,UuLnQw_3810,13 Heterozygous,180129 +JOINT CALLER PREFILTER,UuLnQw_3810,13 Homozygous,150307 +JOINT CALLER PREFILTER,UuLnQw_3810,13 Het/Hom ratio,1.198 +JOINT CALLER PREFILTER,UuLnQw_3810,14 Heterozygous,157400 +JOINT CALLER PREFILTER,UuLnQw_3810,14 Homozygous,111252 +JOINT CALLER PREFILTER,UuLnQw_3810,14 Het/Hom ratio,1.414 +JOINT CALLER PREFILTER,UuLnQw_3810,15 Heterozygous,178147 +JOINT CALLER PREFILTER,UuLnQw_3810,15 Homozygous,185078 +JOINT CALLER PREFILTER,UuLnQw_3810,15 Het/Hom ratio,0.962 +JOINT CALLER PREFILTER,UuLnQw_3810,16 Heterozygous,135144 +JOINT CALLER PREFILTER,UuLnQw_3810,16 Homozygous,174700 +JOINT CALLER PREFILTER,UuLnQw_3810,16 Het/Hom ratio,0.773 +JOINT CALLER PREFILTER,UuLnQw_3810,17 Heterozygous,119003 +JOINT CALLER PREFILTER,UuLnQw_3810,17 Homozygous,163518 +JOINT CALLER PREFILTER,UuLnQw_3810,17 Het/Hom ratio,0.727 +JOINT CALLER PREFILTER,UuLnQw_3810,18 Heterozygous,143642 +JOINT CALLER PREFILTER,UuLnQw_3810,18 Homozygous,194818 +JOINT CALLER PREFILTER,UuLnQw_3810,18 Het/Hom ratio,0.737 +JOINT CALLER PREFILTER,UuLnQw_3810,19 Heterozygous,182857 +JOINT CALLER PREFILTER,UuLnQw_3810,19 Homozygous,105303 +JOINT CALLER PREFILTER,UuLnQw_3810,19 Het/Hom ratio,1.736 +JOINT CALLER PREFILTER,UuLnQw_3810,20 Heterozygous,178394 +JOINT CALLER PREFILTER,UuLnQw_3810,20 Homozygous,198043 +JOINT CALLER PREFILTER,UuLnQw_3810,20 Het/Hom ratio,0.900 +JOINT CALLER PREFILTER,UuLnQw_3810,21 Heterozygous,121414 +JOINT CALLER PREFILTER,UuLnQw_3810,21 Homozygous,146495 +JOINT CALLER PREFILTER,UuLnQw_3810,21 Het/Hom ratio,0.828 +JOINT CALLER PREFILTER,UuLnQw_3810,22 Heterozygous,169863 +JOINT CALLER PREFILTER,UuLnQw_3810,22 Homozygous,198208 +JOINT CALLER PREFILTER,UuLnQw_3810,22 Het/Hom ratio,0.856 +JOINT CALLER PREFILTER,UuLnQw_3810,X Heterozygous,189088 +JOINT CALLER PREFILTER,UuLnQw_3810,X Homozygous,143653 +JOINT CALLER PREFILTER,UuLnQw_3810,X Het/Hom ratio,1.316 +JOINT CALLER PREFILTER,UuLnQw_3810,Y Heterozygous,189794 +JOINT CALLER PREFILTER,UuLnQw_3810,Y Homozygous,118391 +JOINT CALLER PREFILTER,UuLnQw_3810,Y Het/Hom ratio,1.603 +JOINT CALLER POSTFILTER,UuLnQw_3810,1 Heterozygous,117498 +JOINT CALLER POSTFILTER,UuLnQw_3810,1 Homozygous,179328 +JOINT CALLER POSTFILTER,UuLnQw_3810,1 Het/Hom ratio,0.655 +JOINT CALLER POSTFILTER,UuLnQw_3810,2 Heterozygous,197552 +JOINT CALLER POSTFILTER,UuLnQw_3810,2 Homozygous,140226 +JOINT CALLER POSTFILTER,UuLnQw_3810,2 Het/Hom ratio,1.408 +JOINT CALLER POSTFILTER,UuLnQw_3810,3 Heterozygous,135539 +JOINT CALLER POSTFILTER,UuLnQw_3810,3 Homozygous,183451 +JOINT CALLER POSTFILTER,UuLnQw_3810,3 Het/Hom ratio,0.738 +JOINT CALLER POSTFILTER,UuLnQw_3810,4 Heterozygous,109554 +JOINT CALLER POSTFILTER,UuLnQw_3810,4 Homozygous,172963 +JOINT CALLER POSTFILTER,UuLnQw_3810,4 Het/Hom ratio,0.633 +JOINT CALLER POSTFILTER,UuLnQw_3810,5 Heterozygous,136028 +JOINT CALLER POSTFILTER,UuLnQw_3810,5 Homozygous,149720 +JOINT CALLER POSTFILTER,UuLnQw_3810,5 Het/Hom ratio,0.908 +JOINT CALLER POSTFILTER,UuLnQw_3810,6 Heterozygous,150491 +JOINT CALLER POSTFILTER,UuLnQw_3810,6 Homozygous,143454 +JOINT CALLER POSTFILTER,UuLnQw_3810,6 Het/Hom ratio,1.049 +JOINT CALLER POSTFILTER,UuLnQw_3810,7 Heterozygous,152134 +JOINT CALLER POSTFILTER,UuLnQw_3810,7 Homozygous,114069 +JOINT CALLER POSTFILTER,UuLnQw_3810,7 Het/Hom ratio,1.333 +JOINT CALLER POSTFILTER,UuLnQw_3810,8 Heterozygous,193831 +JOINT CALLER POSTFILTER,UuLnQw_3810,8 Homozygous,108129 +JOINT CALLER POSTFILTER,UuLnQw_3810,8 Het/Hom ratio,1.792 +JOINT CALLER POSTFILTER,UuLnQw_3810,9 Heterozygous,125580 +JOINT CALLER POSTFILTER,UuLnQw_3810,9 Homozygous,104573 +JOINT CALLER POSTFILTER,UuLnQw_3810,9 Het/Hom ratio,1.200 +JOINT CALLER POSTFILTER,UuLnQw_3810,10 Heterozygous,104135 +JOINT CALLER POSTFILTER,UuLnQw_3810,10 Homozygous,151534 +JOINT CALLER POSTFILTER,UuLnQw_3810,10 Het/Hom ratio,0.687 +JOINT CALLER POSTFILTER,UuLnQw_3810,11 Heterozygous,169111 +JOINT CALLER POSTFILTER,UuLnQw_3810,11 Homozygous,129444 +JOINT CALLER POSTFILTER,UuLnQw_3810,11 Het/Hom ratio,1.306 +JOINT CALLER POSTFILTER,UuLnQw_3810,12 Heterozygous,115425 +JOINT CALLER POSTFILTER,UuLnQw_3810,12 Homozygous,162523 +JOINT CALLER POSTFILTER,UuLnQw_3810,12 Het/Hom ratio,0.710 +JOINT CALLER POSTFILTER,UuLnQw_3810,13 Heterozygous,103585 +JOINT CALLER POSTFILTER,UuLnQw_3810,13 Homozygous,189294 +JOINT CALLER POSTFILTER,UuLnQw_3810,13 Het/Hom ratio,0.547 +JOINT CALLER POSTFILTER,UuLnQw_3810,14 Heterozygous,107678 +JOINT CALLER POSTFILTER,UuLnQw_3810,14 Homozygous,184787 +JOINT CALLER POSTFILTER,UuLnQw_3810,14 Het/Hom ratio,0.582 +JOINT CALLER POSTFILTER,UuLnQw_3810,15 Heterozygous,121900 +JOINT CALLER POSTFILTER,UuLnQw_3810,15 Homozygous,108414 +JOINT CALLER POSTFILTER,UuLnQw_3810,15 Het/Hom ratio,1.124 +JOINT CALLER POSTFILTER,UuLnQw_3810,16 Heterozygous,138072 +JOINT CALLER POSTFILTER,UuLnQw_3810,16 Homozygous,128768 +JOINT CALLER POSTFILTER,UuLnQw_3810,16 Het/Hom ratio,1.072 +JOINT CALLER POSTFILTER,UuLnQw_3810,17 Heterozygous,138516 +JOINT CALLER POSTFILTER,UuLnQw_3810,17 Homozygous,153433 +JOINT CALLER POSTFILTER,UuLnQw_3810,17 Het/Hom ratio,0.902 +JOINT CALLER POSTFILTER,UuLnQw_3810,18 Heterozygous,146235 +JOINT CALLER POSTFILTER,UuLnQw_3810,18 Homozygous,100775 +JOINT CALLER POSTFILTER,UuLnQw_3810,18 Het/Hom ratio,1.451 +JOINT CALLER POSTFILTER,UuLnQw_3810,19 Heterozygous,107785 +JOINT CALLER POSTFILTER,UuLnQw_3810,19 Homozygous,151311 +JOINT CALLER POSTFILTER,UuLnQw_3810,19 Het/Hom ratio,0.712 +JOINT CALLER POSTFILTER,UuLnQw_3810,20 Heterozygous,198286 +JOINT CALLER POSTFILTER,UuLnQw_3810,20 Homozygous,112589 +JOINT CALLER POSTFILTER,UuLnQw_3810,20 Het/Hom ratio,1.761 +JOINT CALLER POSTFILTER,UuLnQw_3810,21 Heterozygous,138093 +JOINT CALLER POSTFILTER,UuLnQw_3810,21 Homozygous,124422 +JOINT CALLER POSTFILTER,UuLnQw_3810,21 Het/Hom ratio,1.109 +JOINT CALLER POSTFILTER,UuLnQw_3810,22 Heterozygous,147822 +JOINT CALLER POSTFILTER,UuLnQw_3810,22 Homozygous,146040 +JOINT CALLER POSTFILTER,UuLnQw_3810,22 Het/Hom ratio,1.012 +JOINT CALLER POSTFILTER,UuLnQw_3810,X Heterozygous,144569 +JOINT CALLER POSTFILTER,UuLnQw_3810,X Homozygous,153637 +JOINT CALLER POSTFILTER,UuLnQw_3810,X Het/Hom ratio,0.940 +JOINT CALLER POSTFILTER,UuLnQw_3810,Y Heterozygous,171775 +JOINT CALLER POSTFILTER,UuLnQw_3810,Y Homozygous,198530 +JOINT CALLER POSTFILTER,UuLnQw_3810,Y Het/Hom ratio,0.865 diff --git a/data/modules/dragen/PR1915/JqWe_9190_dragen.vc_hethom_ratio_metrics.csv b/data/modules/dragen/PR1915/JqWe_9190_dragen.vc_hethom_ratio_metrics.csv new file mode 100644 index 00000000..67aecf9b --- /dev/null +++ b/data/modules/dragen/PR1915/JqWe_9190_dragen.vc_hethom_ratio_metrics.csv @@ -0,0 +1,288 @@ +JOINT CALLER PREFILTER,JqWe_9190,1 Heterozygous,111423 +JOINT CALLER PREFILTER,JqWe_9190,1 Homozygous,155165 +JOINT CALLER PREFILTER,JqWe_9190,1 Het/Hom ratio,0.718 +JOINT CALLER PREFILTER,JqWe_9190,2 Heterozygous,132427 +JOINT CALLER PREFILTER,JqWe_9190,2 Homozygous,100567 +JOINT CALLER PREFILTER,JqWe_9190,2 Het/Hom ratio,1.316 +JOINT CALLER PREFILTER,JqWe_9190,3 Heterozygous,190062 +JOINT CALLER PREFILTER,JqWe_9190,3 Homozygous,152938 +JOINT CALLER PREFILTER,JqWe_9190,3 Het/Hom ratio,1.242 +JOINT CALLER PREFILTER,JqWe_9190,4 Heterozygous,164234 +JOINT CALLER PREFILTER,JqWe_9190,4 Homozygous,103808 +JOINT CALLER PREFILTER,JqWe_9190,4 Het/Hom ratio,1.582 +JOINT CALLER PREFILTER,JqWe_9190,5 Heterozygous,156190 +JOINT CALLER PREFILTER,JqWe_9190,5 Homozygous,187005 +JOINT CALLER PREFILTER,JqWe_9190,5 Het/Hom ratio,0.835 +JOINT CALLER PREFILTER,JqWe_9190,6 Heterozygous,118364 +JOINT CALLER PREFILTER,JqWe_9190,6 Homozygous,132195 +JOINT CALLER PREFILTER,JqWe_9190,6 Het/Hom ratio,0.895 +JOINT CALLER PREFILTER,JqWe_9190,7 Heterozygous,128581 +JOINT CALLER PREFILTER,JqWe_9190,7 Homozygous,112141 +JOINT CALLER PREFILTER,JqWe_9190,7 Het/Hom ratio,1.146 +JOINT CALLER PREFILTER,JqWe_9190,8 Heterozygous,160365 +JOINT CALLER PREFILTER,JqWe_9190,8 Homozygous,141922 +JOINT CALLER PREFILTER,JqWe_9190,8 Het/Hom ratio,1.129 +JOINT CALLER PREFILTER,JqWe_9190,9 Heterozygous,118282 +JOINT CALLER PREFILTER,JqWe_9190,9 Homozygous,145498 +JOINT CALLER PREFILTER,JqWe_9190,9 Het/Hom ratio,0.812 +JOINT CALLER PREFILTER,JqWe_9190,10 Heterozygous,191807 +JOINT CALLER PREFILTER,JqWe_9190,10 Homozygous,177896 +JOINT CALLER PREFILTER,JqWe_9190,10 Het/Hom ratio,1.078 +JOINT CALLER PREFILTER,JqWe_9190,11 Heterozygous,171067 +JOINT CALLER PREFILTER,JqWe_9190,11 Homozygous,137133 +JOINT CALLER PREFILTER,JqWe_9190,11 Het/Hom ratio,1.247 +JOINT CALLER PREFILTER,JqWe_9190,12 Heterozygous,137841 +JOINT CALLER PREFILTER,JqWe_9190,12 Homozygous,169243 +JOINT CALLER PREFILTER,JqWe_9190,12 Het/Hom ratio,0.814 +JOINT CALLER PREFILTER,JqWe_9190,13 Heterozygous,159954 +JOINT CALLER PREFILTER,JqWe_9190,13 Homozygous,176764 +JOINT CALLER PREFILTER,JqWe_9190,13 Het/Hom ratio,0.904 +JOINT CALLER PREFILTER,JqWe_9190,14 Heterozygous,182798 +JOINT CALLER PREFILTER,JqWe_9190,14 Homozygous,130360 +JOINT CALLER PREFILTER,JqWe_9190,14 Het/Hom ratio,1.402 +JOINT CALLER PREFILTER,JqWe_9190,15 Heterozygous,131726 +JOINT CALLER PREFILTER,JqWe_9190,15 Homozygous,136532 +JOINT CALLER PREFILTER,JqWe_9190,15 Het/Hom ratio,0.964 +JOINT CALLER PREFILTER,JqWe_9190,16 Heterozygous,197568 +JOINT CALLER PREFILTER,JqWe_9190,16 Homozygous,175219 +JOINT CALLER PREFILTER,JqWe_9190,16 Het/Hom ratio,1.127 +JOINT CALLER PREFILTER,JqWe_9190,17 Heterozygous,129787 +JOINT CALLER PREFILTER,JqWe_9190,17 Homozygous,189931 +JOINT CALLER PREFILTER,JqWe_9190,17 Het/Hom ratio,0.683 +JOINT CALLER PREFILTER,JqWe_9190,18 Heterozygous,184000 +JOINT CALLER PREFILTER,JqWe_9190,18 Homozygous,124702 +JOINT CALLER PREFILTER,JqWe_9190,18 Het/Hom ratio,1.475 +JOINT CALLER PREFILTER,JqWe_9190,19 Heterozygous,101547 +JOINT CALLER PREFILTER,JqWe_9190,19 Homozygous,122319 +JOINT CALLER PREFILTER,JqWe_9190,19 Het/Hom ratio,0.830 +JOINT CALLER PREFILTER,JqWe_9190,20 Heterozygous,115584 +JOINT CALLER PREFILTER,JqWe_9190,20 Homozygous,128506 +JOINT CALLER PREFILTER,JqWe_9190,20 Het/Hom ratio,0.899 +JOINT CALLER PREFILTER,JqWe_9190,21 Heterozygous,113607 +JOINT CALLER PREFILTER,JqWe_9190,21 Homozygous,102397 +JOINT CALLER PREFILTER,JqWe_9190,21 Het/Hom ratio,1.109 +JOINT CALLER PREFILTER,JqWe_9190,22 Heterozygous,175392 +JOINT CALLER PREFILTER,JqWe_9190,22 Homozygous,115778 +JOINT CALLER PREFILTER,JqWe_9190,22 Het/Hom ratio,1.514 +JOINT CALLER PREFILTER,JqWe_9190,X Heterozygous,74777 +JOINT CALLER PREFILTER,JqWe_9190,X Homozygous,3478 +JOINT CALLER PREFILTER,JqWe_9190,X Het/Hom ratio,21.50 +JOINT CALLER PREFILTER,JqWe_9190,Y Heterozygous,163788 +JOINT CALLER PREFILTER,JqWe_9190,Y Homozygous,0 +JOINT CALLER PREFILTER,JqWe_9190,Y Het/Hom ratio,inf +JOINT CALLER POSTFILTER,JqWe_9190,1 Heterozygous,119472 +JOINT CALLER POSTFILTER,JqWe_9190,1 Homozygous,118687 +JOINT CALLER POSTFILTER,JqWe_9190,1 Het/Hom ratio,1.006 +JOINT CALLER POSTFILTER,JqWe_9190,2 Heterozygous,193702 +JOINT CALLER POSTFILTER,JqWe_9190,2 Homozygous,132062 +JOINT CALLER POSTFILTER,JqWe_9190,2 Het/Hom ratio,1.466 +JOINT CALLER POSTFILTER,JqWe_9190,3 Heterozygous,105651 +JOINT CALLER POSTFILTER,JqWe_9190,3 Homozygous,171636 +JOINT CALLER POSTFILTER,JqWe_9190,3 Het/Hom ratio,0.615 +JOINT CALLER POSTFILTER,JqWe_9190,4 Heterozygous,168198 +JOINT CALLER POSTFILTER,JqWe_9190,4 Homozygous,198600 +JOINT CALLER POSTFILTER,JqWe_9190,4 Het/Hom ratio,0.846 +JOINT CALLER POSTFILTER,JqWe_9190,5 Heterozygous,151391 +JOINT CALLER POSTFILTER,JqWe_9190,5 Homozygous,169214 +JOINT CALLER POSTFILTER,JqWe_9190,5 Het/Hom ratio,0.894 +JOINT CALLER POSTFILTER,JqWe_9190,6 Heterozygous,157096 +JOINT CALLER POSTFILTER,JqWe_9190,6 Homozygous,138952 +JOINT CALLER POSTFILTER,JqWe_9190,6 Het/Hom ratio,1.130 +JOINT CALLER POSTFILTER,JqWe_9190,7 Heterozygous,136102 +JOINT CALLER POSTFILTER,JqWe_9190,7 Homozygous,197039 +JOINT CALLER POSTFILTER,JqWe_9190,7 Het/Hom ratio,0.690 +JOINT CALLER POSTFILTER,JqWe_9190,8 Heterozygous,193395 +JOINT CALLER POSTFILTER,JqWe_9190,8 Homozygous,143016 +JOINT CALLER POSTFILTER,JqWe_9190,8 Het/Hom ratio,1.352 +JOINT CALLER POSTFILTER,JqWe_9190,9 Heterozygous,197168 +JOINT CALLER POSTFILTER,JqWe_9190,9 Homozygous,195016 +JOINT CALLER POSTFILTER,JqWe_9190,9 Het/Hom ratio,1.011 +JOINT CALLER POSTFILTER,JqWe_9190,10 Heterozygous,175165 +JOINT CALLER POSTFILTER,JqWe_9190,10 Homozygous,166478 +JOINT CALLER POSTFILTER,JqWe_9190,10 Het/Hom ratio,1.052 +JOINT CALLER POSTFILTER,JqWe_9190,11 Heterozygous,115237 +JOINT CALLER POSTFILTER,JqWe_9190,11 Homozygous,128675 +JOINT CALLER POSTFILTER,JqWe_9190,11 Het/Hom ratio,0.895 +JOINT CALLER POSTFILTER,JqWe_9190,12 Heterozygous,188181 +JOINT CALLER POSTFILTER,JqWe_9190,12 Homozygous,124742 +JOINT CALLER POSTFILTER,JqWe_9190,12 Het/Hom ratio,1.508 +JOINT CALLER POSTFILTER,JqWe_9190,13 Heterozygous,196322 +JOINT CALLER POSTFILTER,JqWe_9190,13 Homozygous,133607 +JOINT CALLER POSTFILTER,JqWe_9190,13 Het/Hom ratio,1.469 +JOINT CALLER POSTFILTER,JqWe_9190,14 Heterozygous,136700 +JOINT CALLER POSTFILTER,JqWe_9190,14 Homozygous,154464 +JOINT CALLER POSTFILTER,JqWe_9190,14 Het/Hom ratio,0.884 +JOINT CALLER POSTFILTER,JqWe_9190,15 Heterozygous,174789 +JOINT CALLER POSTFILTER,JqWe_9190,15 Homozygous,103944 +JOINT CALLER POSTFILTER,JqWe_9190,15 Het/Hom ratio,1.681 +JOINT CALLER POSTFILTER,JqWe_9190,16 Heterozygous,190371 +JOINT CALLER POSTFILTER,JqWe_9190,16 Homozygous,153453 +JOINT CALLER POSTFILTER,JqWe_9190,16 Het/Hom ratio,1.240 +JOINT CALLER POSTFILTER,JqWe_9190,17 Heterozygous,197857 +JOINT CALLER POSTFILTER,JqWe_9190,17 Homozygous,114131 +JOINT CALLER POSTFILTER,JqWe_9190,17 Het/Hom ratio,1.733 +JOINT CALLER POSTFILTER,JqWe_9190,18 Heterozygous,127437 +JOINT CALLER POSTFILTER,JqWe_9190,18 Homozygous,150310 +JOINT CALLER POSTFILTER,JqWe_9190,18 Het/Hom ratio,0.847 +JOINT CALLER POSTFILTER,JqWe_9190,19 Heterozygous,138943 +JOINT CALLER POSTFILTER,JqWe_9190,19 Homozygous,131824 +JOINT CALLER POSTFILTER,JqWe_9190,19 Het/Hom ratio,1.054 +JOINT CALLER POSTFILTER,JqWe_9190,20 Heterozygous,176655 +JOINT CALLER POSTFILTER,JqWe_9190,20 Homozygous,138874 +JOINT CALLER POSTFILTER,JqWe_9190,20 Het/Hom ratio,1.272 +JOINT CALLER POSTFILTER,JqWe_9190,21 Heterozygous,194390 +JOINT CALLER POSTFILTER,JqWe_9190,21 Homozygous,197478 +JOINT CALLER POSTFILTER,JqWe_9190,21 Het/Hom ratio,0.984 +JOINT CALLER POSTFILTER,JqWe_9190,22 Heterozygous,105762 +JOINT CALLER POSTFILTER,JqWe_9190,22 Homozygous,138760 +JOINT CALLER POSTFILTER,JqWe_9190,22 Het/Hom ratio,0.762 +JOINT CALLER POSTFILTER,JqWe_9190,X Heterozygous,100073 +JOINT CALLER POSTFILTER,JqWe_9190,X Homozygous,157435 +JOINT CALLER POSTFILTER,JqWe_9190,X Het/Hom ratio,0.635 +JOINT CALLER POSTFILTER,JqWe_9190,Y Heterozygous,143747 +JOINT CALLER POSTFILTER,JqWe_9190,Y Homozygous,159378 +JOINT CALLER POSTFILTER,JqWe_9190,Y Het/Hom ratio,0.901 +JOINT CALLER PREFILTER,GEM_9988,1 Heterozygous,148710 +JOINT CALLER PREFILTER,GEM_9988,1 Homozygous,183175 +JOINT CALLER PREFILTER,GEM_9988,1 Het/Hom ratio,0.811 +JOINT CALLER PREFILTER,GEM_9988,2 Heterozygous,107300 +JOINT CALLER PREFILTER,GEM_9988,2 Homozygous,128052 +JOINT CALLER PREFILTER,GEM_9988,2 Het/Hom ratio,0.837 +JOINT CALLER PREFILTER,GEM_9988,3 Heterozygous,155121 +JOINT CALLER PREFILTER,GEM_9988,3 Homozygous,101442 +JOINT CALLER PREFILTER,GEM_9988,3 Het/Hom ratio,1.529 +JOINT CALLER PREFILTER,GEM_9988,4 Heterozygous,162337 +JOINT CALLER PREFILTER,GEM_9988,4 Homozygous,164242 +JOINT CALLER PREFILTER,GEM_9988,4 Het/Hom ratio,0.988 +JOINT CALLER PREFILTER,GEM_9988,5 Heterozygous,126528 +JOINT CALLER PREFILTER,GEM_9988,5 Homozygous,126510 +JOINT CALLER PREFILTER,GEM_9988,5 Het/Hom ratio,1.000 +JOINT CALLER PREFILTER,GEM_9988,6 Heterozygous,120178 +JOINT CALLER PREFILTER,GEM_9988,6 Homozygous,124489 +JOINT CALLER PREFILTER,GEM_9988,6 Het/Hom ratio,0.965 +JOINT CALLER PREFILTER,GEM_9988,7 Heterozygous,127414 +JOINT CALLER PREFILTER,GEM_9988,7 Homozygous,184905 +JOINT CALLER PREFILTER,GEM_9988,7 Het/Hom ratio,0.689 +JOINT CALLER PREFILTER,GEM_9988,8 Heterozygous,183743 +JOINT CALLER PREFILTER,GEM_9988,8 Homozygous,190020 +JOINT CALLER PREFILTER,GEM_9988,8 Het/Hom ratio,0.966 +JOINT CALLER PREFILTER,GEM_9988,9 Heterozygous,121768 +JOINT CALLER PREFILTER,GEM_9988,9 Homozygous,184735 +JOINT CALLER PREFILTER,GEM_9988,9 Het/Hom ratio,0.659 +JOINT CALLER PREFILTER,GEM_9988,10 Heterozygous,194613 +JOINT CALLER PREFILTER,GEM_9988,10 Homozygous,135254 +JOINT CALLER PREFILTER,GEM_9988,10 Het/Hom ratio,1.438 +JOINT CALLER PREFILTER,GEM_9988,11 Heterozygous,190220 +JOINT CALLER PREFILTER,GEM_9988,11 Homozygous,114047 +JOINT CALLER PREFILTER,GEM_9988,11 Het/Hom ratio,1.667 +JOINT CALLER PREFILTER,GEM_9988,12 Heterozygous,117271 +JOINT CALLER PREFILTER,GEM_9988,12 Homozygous,182682 +JOINT CALLER PREFILTER,GEM_9988,12 Het/Hom ratio,0.641 +JOINT CALLER PREFILTER,GEM_9988,13 Heterozygous,179587 +JOINT CALLER PREFILTER,GEM_9988,13 Homozygous,145004 +JOINT CALLER PREFILTER,GEM_9988,13 Het/Hom ratio,1.238 +JOINT CALLER PREFILTER,GEM_9988,14 Heterozygous,193691 +JOINT CALLER PREFILTER,GEM_9988,14 Homozygous,152113 +JOINT CALLER PREFILTER,GEM_9988,14 Het/Hom ratio,1.273 +JOINT CALLER PREFILTER,GEM_9988,15 Heterozygous,190399 +JOINT CALLER PREFILTER,GEM_9988,15 Homozygous,136833 +JOINT CALLER PREFILTER,GEM_9988,15 Het/Hom ratio,1.391 +JOINT CALLER PREFILTER,GEM_9988,16 Heterozygous,187367 +JOINT CALLER PREFILTER,GEM_9988,16 Homozygous,100917 +JOINT CALLER PREFILTER,GEM_9988,16 Het/Hom ratio,1.856 +JOINT CALLER PREFILTER,GEM_9988,17 Heterozygous,108044 +JOINT CALLER PREFILTER,GEM_9988,17 Homozygous,136798 +JOINT CALLER PREFILTER,GEM_9988,17 Het/Hom ratio,0.789 +JOINT CALLER PREFILTER,GEM_9988,18 Heterozygous,153935 +JOINT CALLER PREFILTER,GEM_9988,18 Homozygous,189474 +JOINT CALLER PREFILTER,GEM_9988,18 Het/Hom ratio,0.812 +JOINT CALLER PREFILTER,GEM_9988,19 Heterozygous,182348 +JOINT CALLER PREFILTER,GEM_9988,19 Homozygous,148877 +JOINT CALLER PREFILTER,GEM_9988,19 Het/Hom ratio,1.224 +JOINT CALLER PREFILTER,GEM_9988,20 Heterozygous,167111 +JOINT CALLER PREFILTER,GEM_9988,20 Homozygous,158960 +JOINT CALLER PREFILTER,GEM_9988,20 Het/Hom ratio,1.051 +JOINT CALLER PREFILTER,GEM_9988,21 Heterozygous,162882 +JOINT CALLER PREFILTER,GEM_9988,21 Homozygous,137125 +JOINT CALLER PREFILTER,GEM_9988,21 Het/Hom ratio,1.187 +JOINT CALLER PREFILTER,GEM_9988,22 Heterozygous,179324 +JOINT CALLER PREFILTER,GEM_9988,22 Homozygous,155763 +JOINT CALLER PREFILTER,GEM_9988,22 Het/Hom ratio,1.151 +JOINT CALLER PREFILTER,GEM_9988,X Heterozygous,199275 +JOINT CALLER PREFILTER,GEM_9988,X Homozygous,172679 +JOINT CALLER PREFILTER,GEM_9988,X Het/Hom ratio,1.154 +JOINT CALLER PREFILTER,GEM_9988,Y Heterozygous,157080 +JOINT CALLER PREFILTER,GEM_9988,Y Homozygous,196253 +JOINT CALLER PREFILTER,GEM_9988,Y Het/Hom ratio,0.800 +JOINT CALLER POSTFILTER,GEM_9988,1 Heterozygous,140406 +JOINT CALLER POSTFILTER,GEM_9988,1 Homozygous,146352 +JOINT CALLER POSTFILTER,GEM_9988,1 Het/Hom ratio,0.959 +JOINT CALLER POSTFILTER,GEM_9988,2 Heterozygous,109109 +JOINT CALLER POSTFILTER,GEM_9988,2 Homozygous,134132 +JOINT CALLER POSTFILTER,GEM_9988,2 Het/Hom ratio,0.813 +JOINT CALLER POSTFILTER,GEM_9988,3 Heterozygous,113650 +JOINT CALLER POSTFILTER,GEM_9988,3 Homozygous,153400 +JOINT CALLER POSTFILTER,GEM_9988,3 Het/Hom ratio,0.740 +JOINT CALLER POSTFILTER,GEM_9988,4 Heterozygous,177105 +JOINT CALLER POSTFILTER,GEM_9988,4 Homozygous,169908 +JOINT CALLER POSTFILTER,GEM_9988,4 Het/Hom ratio,1.042 +JOINT CALLER POSTFILTER,GEM_9988,5 Heterozygous,183578 +JOINT CALLER POSTFILTER,GEM_9988,5 Homozygous,185724 +JOINT CALLER POSTFILTER,GEM_9988,5 Het/Hom ratio,0.988 +JOINT CALLER POSTFILTER,GEM_9988,6 Heterozygous,182350 +JOINT CALLER POSTFILTER,GEM_9988,6 Homozygous,135258 +JOINT CALLER POSTFILTER,GEM_9988,6 Het/Hom ratio,1.348 +JOINT CALLER POSTFILTER,GEM_9988,7 Heterozygous,134814 +JOINT CALLER POSTFILTER,GEM_9988,7 Homozygous,159724 +JOINT CALLER POSTFILTER,GEM_9988,7 Het/Hom ratio,0.844 +JOINT CALLER POSTFILTER,GEM_9988,8 Heterozygous,124646 +JOINT CALLER POSTFILTER,GEM_9988,8 Homozygous,111296 +JOINT CALLER POSTFILTER,GEM_9988,8 Het/Hom ratio,1.119 +JOINT CALLER POSTFILTER,GEM_9988,9 Heterozygous,164642 +JOINT CALLER POSTFILTER,GEM_9988,9 Homozygous,166220 +JOINT CALLER POSTFILTER,GEM_9988,9 Het/Hom ratio,0.990 +JOINT CALLER POSTFILTER,GEM_9988,10 Heterozygous,130140 +JOINT CALLER POSTFILTER,GEM_9988,10 Homozygous,181962 +JOINT CALLER POSTFILTER,GEM_9988,10 Het/Hom ratio,0.715 +JOINT CALLER POSTFILTER,GEM_9988,11 Heterozygous,107375 +JOINT CALLER POSTFILTER,GEM_9988,11 Homozygous,131694 +JOINT CALLER POSTFILTER,GEM_9988,11 Het/Hom ratio,0.815 +JOINT CALLER POSTFILTER,GEM_9988,12 Heterozygous,102728 +JOINT CALLER POSTFILTER,GEM_9988,12 Homozygous,169861 +JOINT CALLER POSTFILTER,GEM_9988,12 Het/Hom ratio,0.604 +JOINT CALLER POSTFILTER,GEM_9988,13 Heterozygous,136940 +JOINT CALLER POSTFILTER,GEM_9988,13 Homozygous,115875 +JOINT CALLER POSTFILTER,GEM_9988,13 Het/Hom ratio,1.181 +JOINT CALLER POSTFILTER,GEM_9988,14 Heterozygous,191618 +JOINT CALLER POSTFILTER,GEM_9988,14 Homozygous,115966 +JOINT CALLER POSTFILTER,GEM_9988,14 Het/Hom ratio,1.652 +JOINT CALLER POSTFILTER,GEM_9988,15 Heterozygous,124877 +JOINT CALLER POSTFILTER,GEM_9988,15 Homozygous,143600 +JOINT CALLER POSTFILTER,GEM_9988,15 Het/Hom ratio,0.869 +JOINT CALLER POSTFILTER,GEM_9988,16 Heterozygous,183498 +JOINT CALLER POSTFILTER,GEM_9988,16 Homozygous,149130 +JOINT CALLER POSTFILTER,GEM_9988,16 Het/Hom ratio,1.230 +JOINT CALLER POSTFILTER,GEM_9988,17 Heterozygous,122398 +JOINT CALLER POSTFILTER,GEM_9988,17 Homozygous,102532 +JOINT CALLER POSTFILTER,GEM_9988,17 Het/Hom ratio,1.193 +JOINT CALLER POSTFILTER,GEM_9988,18 Heterozygous,183614 +JOINT CALLER POSTFILTER,GEM_9988,18 Homozygous,171389 +JOINT CALLER POSTFILTER,GEM_9988,18 Het/Hom ratio,1.071 +JOINT CALLER POSTFILTER,GEM_9988,19 Heterozygous,112864 +JOINT CALLER POSTFILTER,GEM_9988,19 Homozygous,176608 +JOINT CALLER POSTFILTER,GEM_9988,19 Het/Hom ratio,0.639 +JOINT CALLER POSTFILTER,GEM_9988,20 Heterozygous,152318 +JOINT CALLER POSTFILTER,GEM_9988,20 Homozygous,128729 +JOINT CALLER POSTFILTER,GEM_9988,20 Het/Hom ratio,1.183 +JOINT CALLER POSTFILTER,GEM_9988,21 Heterozygous,125284 +JOINT CALLER POSTFILTER,GEM_9988,21 Homozygous,162001 +JOINT CALLER POSTFILTER,GEM_9988,21 Het/Hom ratio,0.773 +JOINT CALLER POSTFILTER,GEM_9988,22 Heterozygous,148926 +JOINT CALLER POSTFILTER,GEM_9988,22 Homozygous,128800 +JOINT CALLER POSTFILTER,GEM_9988,22 Het/Hom ratio,1.156 +JOINT CALLER POSTFILTER,GEM_9988,X Heterozygous,159775 +JOINT CALLER POSTFILTER,GEM_9988,X Homozygous,149557 +JOINT CALLER POSTFILTER,GEM_9988,X Het/Hom ratio,1.068 +JOINT CALLER POSTFILTER,GEM_9988,Y Heterozygous,175788 +JOINT CALLER POSTFILTER,GEM_9988,Y Homozygous,126674 +JOINT CALLER POSTFILTER,GEM_9988,Y Het/Hom ratio,1.387 diff --git a/data/modules/dragen/PR1915/MICoHG_9054_dragen.vc_hethom_ratio_metrics.csv b/data/modules/dragen/PR1915/MICoHG_9054_dragen.vc_hethom_ratio_metrics.csv new file mode 100644 index 00000000..f4720777 --- /dev/null +++ b/data/modules/dragen/PR1915/MICoHG_9054_dragen.vc_hethom_ratio_metrics.csv @@ -0,0 +1,72 @@ +VARIANT CALLER POSTFILTER,MICoHG_9054,1 Heterozygous,188629 +VARIANT CALLER POSTFILTER,MICoHG_9054,1 Homozygous,177916 +VARIANT CALLER POSTFILTER,MICoHG_9054,1 Het/Hom ratio,1.060 +VARIANT CALLER POSTFILTER,MICoHG_9054,2 Heterozygous,132878 +VARIANT CALLER POSTFILTER,MICoHG_9054,2 Homozygous,133798 +VARIANT CALLER POSTFILTER,MICoHG_9054,2 Het/Hom ratio,0.993 +VARIANT CALLER POSTFILTER,MICoHG_9054,3 Heterozygous,140143 +VARIANT CALLER POSTFILTER,MICoHG_9054,3 Homozygous,106044 +VARIANT CALLER POSTFILTER,MICoHG_9054,3 Het/Hom ratio,1.321 +VARIANT CALLER POSTFILTER,MICoHG_9054,4 Heterozygous,127343 +VARIANT CALLER POSTFILTER,MICoHG_9054,4 Homozygous,142925 +VARIANT CALLER POSTFILTER,MICoHG_9054,4 Het/Hom ratio,0.890 +VARIANT CALLER POSTFILTER,MICoHG_9054,5 Heterozygous,176758 +VARIANT CALLER POSTFILTER,MICoHG_9054,5 Homozygous,170916 +VARIANT CALLER POSTFILTER,MICoHG_9054,5 Het/Hom ratio,1.034 +VARIANT CALLER POSTFILTER,MICoHG_9054,6 Heterozygous,133775 +VARIANT CALLER POSTFILTER,MICoHG_9054,6 Homozygous,143177 +VARIANT CALLER POSTFILTER,MICoHG_9054,6 Het/Hom ratio,0.934 +VARIANT CALLER POSTFILTER,MICoHG_9054,7 Heterozygous,179624 +VARIANT CALLER POSTFILTER,MICoHG_9054,7 Homozygous,143479 +VARIANT CALLER POSTFILTER,MICoHG_9054,7 Het/Hom ratio,1.251 +VARIANT CALLER POSTFILTER,MICoHG_9054,8 Heterozygous,157794 +VARIANT CALLER POSTFILTER,MICoHG_9054,8 Homozygous,155944 +VARIANT CALLER POSTFILTER,MICoHG_9054,8 Het/Hom ratio,1.011 +VARIANT CALLER POSTFILTER,MICoHG_9054,9 Heterozygous,130489 +VARIANT CALLER POSTFILTER,MICoHG_9054,9 Homozygous,135115 +VARIANT CALLER POSTFILTER,MICoHG_9054,9 Het/Hom ratio,0.965 +VARIANT CALLER POSTFILTER,MICoHG_9054,10 Heterozygous,109868 +VARIANT CALLER POSTFILTER,MICoHG_9054,10 Homozygous,108878 +VARIANT CALLER POSTFILTER,MICoHG_9054,10 Het/Hom ratio,1.009 +VARIANT CALLER POSTFILTER,MICoHG_9054,11 Heterozygous,157481 +VARIANT CALLER POSTFILTER,MICoHG_9054,11 Homozygous,154087 +VARIANT CALLER POSTFILTER,MICoHG_9054,11 Het/Hom ratio,1.022 +VARIANT CALLER POSTFILTER,MICoHG_9054,12 Heterozygous,160940 +VARIANT CALLER POSTFILTER,MICoHG_9054,12 Homozygous,100398 +VARIANT CALLER POSTFILTER,MICoHG_9054,12 Het/Hom ratio,1.603 +VARIANT CALLER POSTFILTER,MICoHG_9054,13 Heterozygous,135645 +VARIANT CALLER POSTFILTER,MICoHG_9054,13 Homozygous,199846 +VARIANT CALLER POSTFILTER,MICoHG_9054,13 Het/Hom ratio,0.678 +VARIANT CALLER POSTFILTER,MICoHG_9054,14 Heterozygous,151187 +VARIANT CALLER POSTFILTER,MICoHG_9054,14 Homozygous,157791 +VARIANT CALLER POSTFILTER,MICoHG_9054,14 Het/Hom ratio,0.958 +VARIANT CALLER POSTFILTER,MICoHG_9054,15 Heterozygous,105546 +VARIANT CALLER POSTFILTER,MICoHG_9054,15 Homozygous,166585 +VARIANT CALLER POSTFILTER,MICoHG_9054,15 Het/Hom ratio,0.633 +VARIANT CALLER POSTFILTER,MICoHG_9054,16 Heterozygous,197559 +VARIANT CALLER POSTFILTER,MICoHG_9054,16 Homozygous,191918 +VARIANT CALLER POSTFILTER,MICoHG_9054,16 Het/Hom ratio,1.029 +VARIANT CALLER POSTFILTER,MICoHG_9054,17 Heterozygous,163638 +VARIANT CALLER POSTFILTER,MICoHG_9054,17 Homozygous,197339 +VARIANT CALLER POSTFILTER,MICoHG_9054,17 Het/Hom ratio,0.829 +VARIANT CALLER POSTFILTER,MICoHG_9054,18 Heterozygous,189167 +VARIANT CALLER POSTFILTER,MICoHG_9054,18 Homozygous,169006 +VARIANT CALLER POSTFILTER,MICoHG_9054,18 Het/Hom ratio,1.119 +VARIANT CALLER POSTFILTER,MICoHG_9054,19 Heterozygous,160975 +VARIANT CALLER POSTFILTER,MICoHG_9054,19 Homozygous,102263 +VARIANT CALLER POSTFILTER,MICoHG_9054,19 Het/Hom ratio,1.574 +VARIANT CALLER POSTFILTER,MICoHG_9054,20 Heterozygous,134625 +VARIANT CALLER POSTFILTER,MICoHG_9054,20 Homozygous,176298 +VARIANT CALLER POSTFILTER,MICoHG_9054,20 Het/Hom ratio,0.763 +VARIANT CALLER POSTFILTER,MICoHG_9054,21 Heterozygous,148426 +VARIANT CALLER POSTFILTER,MICoHG_9054,21 Homozygous,144962 +VARIANT CALLER POSTFILTER,MICoHG_9054,21 Het/Hom ratio,1.023 +VARIANT CALLER POSTFILTER,MICoHG_9054,22 Heterozygous,195775 +VARIANT CALLER POSTFILTER,MICoHG_9054,22 Homozygous,188932 +VARIANT CALLER POSTFILTER,MICoHG_9054,22 Het/Hom ratio,1.036 +VARIANT CALLER POSTFILTER,MICoHG_9054,X Heterozygous,121742 +VARIANT CALLER POSTFILTER,MICoHG_9054,X Homozygous,128450 +VARIANT CALLER POSTFILTER,MICoHG_9054,X Het/Hom ratio,0.947 +VARIANT CALLER POSTFILTER,MICoHG_9054,Y Heterozygous,131616 +VARIANT CALLER POSTFILTER,MICoHG_9054,Y Homozygous,103908 +VARIANT CALLER POSTFILTER,MICoHG_9054,Y Het/Hom ratio,1.266 diff --git a/data/modules/dragen/PR1915/PtX_9299_dragen.vc_hethom_ratio_metrics.csv b/data/modules/dragen/PR1915/PtX_9299_dragen.vc_hethom_ratio_metrics.csv new file mode 100644 index 00000000..15ee55b3 --- /dev/null +++ b/data/modules/dragen/PR1915/PtX_9299_dragen.vc_hethom_ratio_metrics.csv @@ -0,0 +1,72 @@ +VARIANT CALLER POSTFILTER,PtX_9299,1 Heterozygous,185040 +VARIANT CALLER POSTFILTER,PtX_9299,1 Homozygous,178867 +VARIANT CALLER POSTFILTER,PtX_9299,1 Het/Hom ratio,1.034 +VARIANT CALLER POSTFILTER,PtX_9299,2 Heterozygous,108602 +VARIANT CALLER POSTFILTER,PtX_9299,2 Homozygous,165145 +VARIANT CALLER POSTFILTER,PtX_9299,2 Het/Hom ratio,0.657 +VARIANT CALLER POSTFILTER,PtX_9299,3 Heterozygous,151105 +VARIANT CALLER POSTFILTER,PtX_9299,3 Homozygous,156647 +VARIANT CALLER POSTFILTER,PtX_9299,3 Het/Hom ratio,0.964 +VARIANT CALLER POSTFILTER,PtX_9299,4 Heterozygous,104362 +VARIANT CALLER POSTFILTER,PtX_9299,4 Homozygous,152233 +VARIANT CALLER POSTFILTER,PtX_9299,4 Het/Hom ratio,0.685 +VARIANT CALLER POSTFILTER,PtX_9299,5 Heterozygous,135844 +VARIANT CALLER POSTFILTER,PtX_9299,5 Homozygous,197179 +VARIANT CALLER POSTFILTER,PtX_9299,5 Het/Hom ratio,0.688 +VARIANT CALLER POSTFILTER,PtX_9299,6 Heterozygous,117068 +VARIANT CALLER POSTFILTER,PtX_9299,6 Homozygous,198880 +VARIANT CALLER POSTFILTER,PtX_9299,6 Het/Hom ratio,0.588 +VARIANT CALLER POSTFILTER,PtX_9299,7 Heterozygous,118652 +VARIANT CALLER POSTFILTER,PtX_9299,7 Homozygous,191030 +VARIANT CALLER POSTFILTER,PtX_9299,7 Het/Hom ratio,0.621 +VARIANT CALLER POSTFILTER,PtX_9299,8 Heterozygous,124694 +VARIANT CALLER POSTFILTER,PtX_9299,8 Homozygous,167640 +VARIANT CALLER POSTFILTER,PtX_9299,8 Het/Hom ratio,0.743 +VARIANT CALLER POSTFILTER,PtX_9299,9 Heterozygous,193915 +VARIANT CALLER POSTFILTER,PtX_9299,9 Homozygous,121576 +VARIANT CALLER POSTFILTER,PtX_9299,9 Het/Hom ratio,1.595 +VARIANT CALLER POSTFILTER,PtX_9299,10 Heterozygous,153845 +VARIANT CALLER POSTFILTER,PtX_9299,10 Homozygous,157219 +VARIANT CALLER POSTFILTER,PtX_9299,10 Het/Hom ratio,0.978 +VARIANT CALLER POSTFILTER,PtX_9299,11 Heterozygous,145515 +VARIANT CALLER POSTFILTER,PtX_9299,11 Homozygous,144117 +VARIANT CALLER POSTFILTER,PtX_9299,11 Het/Hom ratio,1.009 +VARIANT CALLER POSTFILTER,PtX_9299,12 Heterozygous,100895 +VARIANT CALLER POSTFILTER,PtX_9299,12 Homozygous,171826 +VARIANT CALLER POSTFILTER,PtX_9299,12 Het/Hom ratio,0.587 +VARIANT CALLER POSTFILTER,PtX_9299,13 Heterozygous,109999 +VARIANT CALLER POSTFILTER,PtX_9299,13 Homozygous,137978 +VARIANT CALLER POSTFILTER,PtX_9299,13 Het/Hom ratio,0.797 +VARIANT CALLER POSTFILTER,PtX_9299,14 Heterozygous,142762 +VARIANT CALLER POSTFILTER,PtX_9299,14 Homozygous,150524 +VARIANT CALLER POSTFILTER,PtX_9299,14 Het/Hom ratio,0.948 +VARIANT CALLER POSTFILTER,PtX_9299,15 Heterozygous,152260 +VARIANT CALLER POSTFILTER,PtX_9299,15 Homozygous,104686 +VARIANT CALLER POSTFILTER,PtX_9299,15 Het/Hom ratio,1.454 +VARIANT CALLER POSTFILTER,PtX_9299,16 Heterozygous,195609 +VARIANT CALLER POSTFILTER,PtX_9299,16 Homozygous,150172 +VARIANT CALLER POSTFILTER,PtX_9299,16 Het/Hom ratio,1.302 +VARIANT CALLER POSTFILTER,PtX_9299,17 Heterozygous,147632 +VARIANT CALLER POSTFILTER,PtX_9299,17 Homozygous,185783 +VARIANT CALLER POSTFILTER,PtX_9299,17 Het/Hom ratio,0.794 +VARIANT CALLER POSTFILTER,PtX_9299,18 Heterozygous,156683 +VARIANT CALLER POSTFILTER,PtX_9299,18 Homozygous,103799 +VARIANT CALLER POSTFILTER,PtX_9299,18 Het/Hom ratio,1.509 +VARIANT CALLER POSTFILTER,PtX_9299,19 Heterozygous,162410 +VARIANT CALLER POSTFILTER,PtX_9299,19 Homozygous,155721 +VARIANT CALLER POSTFILTER,PtX_9299,19 Het/Hom ratio,1.042 +VARIANT CALLER POSTFILTER,PtX_9299,20 Heterozygous,196344 +VARIANT CALLER POSTFILTER,PtX_9299,20 Homozygous,127102 +VARIANT CALLER POSTFILTER,PtX_9299,20 Het/Hom ratio,1.544 +VARIANT CALLER POSTFILTER,PtX_9299,21 Heterozygous,173711 +VARIANT CALLER POSTFILTER,PtX_9299,21 Homozygous,123348 +VARIANT CALLER POSTFILTER,PtX_9299,21 Het/Hom ratio,1.408 +VARIANT CALLER POSTFILTER,PtX_9299,22 Heterozygous,112960 +VARIANT CALLER POSTFILTER,PtX_9299,22 Homozygous,133713 +VARIANT CALLER POSTFILTER,PtX_9299,22 Het/Hom ratio,0.844 +VARIANT CALLER POSTFILTER,PtX_9299,X Heterozygous,173653 +VARIANT CALLER POSTFILTER,PtX_9299,X Homozygous,162244 +VARIANT CALLER POSTFILTER,PtX_9299,X Het/Hom ratio,1.070 +VARIANT CALLER POSTFILTER,PtX_9299,Y Heterozygous,173577 +VARIANT CALLER POSTFILTER,PtX_9299,Y Homozygous,195061 +VARIANT CALLER POSTFILTER,PtX_9299,Y Het/Hom ratio,0.889 diff --git a/data/modules/dragen/PR1915/README.md b/data/modules/dragen/PR1915/README.md new file mode 100644 index 00000000..2f04054c --- /dev/null +++ b/data/modules/dragen/PR1915/README.md @@ -0,0 +1 @@ +Artificial \.vc_hethom_ratio_metrics.csv files. diff --git a/data/modules/dragen/PR1915/a_82_dragen.vc_hethom_ratio_metrics.csv b/data/modules/dragen/PR1915/a_82_dragen.vc_hethom_ratio_metrics.csv new file mode 100644 index 00000000..821f20f7 --- /dev/null +++ b/data/modules/dragen/PR1915/a_82_dragen.vc_hethom_ratio_metrics.csv @@ -0,0 +1,288 @@ +JOINT CALLER PREFILTER,a_82,1 Heterozygous,145467 +JOINT CALLER PREFILTER,a_82,1 Homozygous,169490 +JOINT CALLER PREFILTER,a_82,1 Het/Hom ratio,0.858 +JOINT CALLER PREFILTER,a_82,2 Heterozygous,125324 +JOINT CALLER PREFILTER,a_82,2 Homozygous,167408 +JOINT CALLER PREFILTER,a_82,2 Het/Hom ratio,0.748 +JOINT CALLER PREFILTER,a_82,3 Heterozygous,125595 +JOINT CALLER PREFILTER,a_82,3 Homozygous,119356 +JOINT CALLER PREFILTER,a_82,3 Het/Hom ratio,1.052 +JOINT CALLER PREFILTER,a_82,4 Heterozygous,185686 +JOINT CALLER PREFILTER,a_82,4 Homozygous,193382 +JOINT CALLER PREFILTER,a_82,4 Het/Hom ratio,0.960 +JOINT CALLER PREFILTER,a_82,5 Heterozygous,185644 +JOINT CALLER PREFILTER,a_82,5 Homozygous,149298 +JOINT CALLER PREFILTER,a_82,5 Het/Hom ratio,1.243 +JOINT CALLER PREFILTER,a_82,6 Heterozygous,110151 +JOINT CALLER PREFILTER,a_82,6 Homozygous,142075 +JOINT CALLER PREFILTER,a_82,6 Het/Hom ratio,0.775 +JOINT CALLER PREFILTER,a_82,7 Heterozygous,132277 +JOINT CALLER PREFILTER,a_82,7 Homozygous,197149 +JOINT CALLER PREFILTER,a_82,7 Het/Hom ratio,0.670 +JOINT CALLER PREFILTER,a_82,8 Heterozygous,120566 +JOINT CALLER PREFILTER,a_82,8 Homozygous,184469 +JOINT CALLER PREFILTER,a_82,8 Het/Hom ratio,0.653 +JOINT CALLER PREFILTER,a_82,9 Heterozygous,147173 +JOINT CALLER PREFILTER,a_82,9 Homozygous,100997 +JOINT CALLER PREFILTER,a_82,9 Het/Hom ratio,1.457 +JOINT CALLER PREFILTER,a_82,10 Heterozygous,153680 +JOINT CALLER PREFILTER,a_82,10 Homozygous,101669 +JOINT CALLER PREFILTER,a_82,10 Het/Hom ratio,1.511 +JOINT CALLER PREFILTER,a_82,11 Heterozygous,107426 +JOINT CALLER PREFILTER,a_82,11 Homozygous,196115 +JOINT CALLER PREFILTER,a_82,11 Het/Hom ratio,0.547 +JOINT CALLER PREFILTER,a_82,12 Heterozygous,190479 +JOINT CALLER PREFILTER,a_82,12 Homozygous,110006 +JOINT CALLER PREFILTER,a_82,12 Het/Hom ratio,1.731 +JOINT CALLER PREFILTER,a_82,13 Heterozygous,183405 +JOINT CALLER PREFILTER,a_82,13 Homozygous,189402 +JOINT CALLER PREFILTER,a_82,13 Het/Hom ratio,0.968 +JOINT CALLER PREFILTER,a_82,14 Heterozygous,190342 +JOINT CALLER PREFILTER,a_82,14 Homozygous,147706 +JOINT CALLER PREFILTER,a_82,14 Het/Hom ratio,1.288 +JOINT CALLER PREFILTER,a_82,15 Heterozygous,128846 +JOINT CALLER PREFILTER,a_82,15 Homozygous,172793 +JOINT CALLER PREFILTER,a_82,15 Het/Hom ratio,0.745 +JOINT CALLER PREFILTER,a_82,16 Heterozygous,131647 +JOINT CALLER PREFILTER,a_82,16 Homozygous,186725 +JOINT CALLER PREFILTER,a_82,16 Het/Hom ratio,0.705 +JOINT CALLER PREFILTER,a_82,17 Heterozygous,135131 +JOINT CALLER PREFILTER,a_82,17 Homozygous,134054 +JOINT CALLER PREFILTER,a_82,17 Het/Hom ratio,1.008 +JOINT CALLER PREFILTER,a_82,18 Heterozygous,176547 +JOINT CALLER PREFILTER,a_82,18 Homozygous,109178 +JOINT CALLER PREFILTER,a_82,18 Het/Hom ratio,1.617 +JOINT CALLER PREFILTER,a_82,19 Heterozygous,121111 +JOINT CALLER PREFILTER,a_82,19 Homozygous,189090 +JOINT CALLER PREFILTER,a_82,19 Het/Hom ratio,0.640 +JOINT CALLER PREFILTER,a_82,20 Heterozygous,113344 +JOINT CALLER PREFILTER,a_82,20 Homozygous,124735 +JOINT CALLER PREFILTER,a_82,20 Het/Hom ratio,0.908 +JOINT CALLER PREFILTER,a_82,21 Heterozygous,132148 +JOINT CALLER PREFILTER,a_82,21 Homozygous,124202 +JOINT CALLER PREFILTER,a_82,21 Het/Hom ratio,1.063 +JOINT CALLER PREFILTER,a_82,22 Heterozygous,117210 +JOINT CALLER PREFILTER,a_82,22 Homozygous,179119 +JOINT CALLER PREFILTER,a_82,22 Het/Hom ratio,0.654 +JOINT CALLER PREFILTER,a_82,X Heterozygous,4284 +JOINT CALLER PREFILTER,a_82,X Homozygous,18 +JOINT CALLER PREFILTER,a_82,X Het/Hom ratio,18.00 +JOINT CALLER PREFILTER,a_82,Y Heterozygous,111490 +JOINT CALLER PREFILTER,a_82,Y Homozygous,0 +JOINT CALLER PREFILTER,a_82,Y Het/Hom ratio,inf +JOINT CALLER POSTFILTER,a_82,1 Heterozygous,135405 +JOINT CALLER POSTFILTER,a_82,1 Homozygous,114034 +JOINT CALLER POSTFILTER,a_82,1 Het/Hom ratio,1.187 +JOINT CALLER POSTFILTER,a_82,2 Heterozygous,135909 +JOINT CALLER POSTFILTER,a_82,2 Homozygous,166179 +JOINT CALLER POSTFILTER,a_82,2 Het/Hom ratio,0.817 +JOINT CALLER POSTFILTER,a_82,3 Heterozygous,110425 +JOINT CALLER POSTFILTER,a_82,3 Homozygous,149866 +JOINT CALLER POSTFILTER,a_82,3 Het/Hom ratio,0.736 +JOINT CALLER POSTFILTER,a_82,4 Heterozygous,131464 +JOINT CALLER POSTFILTER,a_82,4 Homozygous,142542 +JOINT CALLER POSTFILTER,a_82,4 Het/Hom ratio,0.922 +JOINT CALLER POSTFILTER,a_82,5 Heterozygous,182548 +JOINT CALLER POSTFILTER,a_82,5 Homozygous,147001 +JOINT CALLER POSTFILTER,a_82,5 Het/Hom ratio,1.241 +JOINT CALLER POSTFILTER,a_82,6 Heterozygous,122719 +JOINT CALLER POSTFILTER,a_82,6 Homozygous,137702 +JOINT CALLER POSTFILTER,a_82,6 Het/Hom ratio,0.891 +JOINT CALLER POSTFILTER,a_82,7 Heterozygous,196958 +JOINT CALLER POSTFILTER,a_82,7 Homozygous,132375 +JOINT CALLER POSTFILTER,a_82,7 Het/Hom ratio,1.487 +JOINT CALLER POSTFILTER,a_82,8 Heterozygous,145971 +JOINT CALLER POSTFILTER,a_82,8 Homozygous,189397 +JOINT CALLER POSTFILTER,a_82,8 Het/Hom ratio,0.770 +JOINT CALLER POSTFILTER,a_82,9 Heterozygous,160656 +JOINT CALLER POSTFILTER,a_82,9 Homozygous,153961 +JOINT CALLER POSTFILTER,a_82,9 Het/Hom ratio,1.043 +JOINT CALLER POSTFILTER,a_82,10 Heterozygous,110680 +JOINT CALLER POSTFILTER,a_82,10 Homozygous,135234 +JOINT CALLER POSTFILTER,a_82,10 Het/Hom ratio,0.818 +JOINT CALLER POSTFILTER,a_82,11 Heterozygous,163736 +JOINT CALLER POSTFILTER,a_82,11 Homozygous,119634 +JOINT CALLER POSTFILTER,a_82,11 Het/Hom ratio,1.368 +JOINT CALLER POSTFILTER,a_82,12 Heterozygous,121782 +JOINT CALLER POSTFILTER,a_82,12 Homozygous,143472 +JOINT CALLER POSTFILTER,a_82,12 Het/Hom ratio,0.848 +JOINT CALLER POSTFILTER,a_82,13 Heterozygous,156782 +JOINT CALLER POSTFILTER,a_82,13 Homozygous,167520 +JOINT CALLER POSTFILTER,a_82,13 Het/Hom ratio,0.935 +JOINT CALLER POSTFILTER,a_82,14 Heterozygous,128660 +JOINT CALLER POSTFILTER,a_82,14 Homozygous,199212 +JOINT CALLER POSTFILTER,a_82,14 Het/Hom ratio,0.645 +JOINT CALLER POSTFILTER,a_82,15 Heterozygous,107327 +JOINT CALLER POSTFILTER,a_82,15 Homozygous,112141 +JOINT CALLER POSTFILTER,a_82,15 Het/Hom ratio,0.957 +JOINT CALLER POSTFILTER,a_82,16 Heterozygous,141620 +JOINT CALLER POSTFILTER,a_82,16 Homozygous,173772 +JOINT CALLER POSTFILTER,a_82,16 Het/Hom ratio,0.814 +JOINT CALLER POSTFILTER,a_82,17 Heterozygous,143001 +JOINT CALLER POSTFILTER,a_82,17 Homozygous,152423 +JOINT CALLER POSTFILTER,a_82,17 Het/Hom ratio,0.938 +JOINT CALLER POSTFILTER,a_82,18 Heterozygous,140888 +JOINT CALLER POSTFILTER,a_82,18 Homozygous,148558 +JOINT CALLER POSTFILTER,a_82,18 Het/Hom ratio,0.948 +JOINT CALLER POSTFILTER,a_82,19 Heterozygous,132491 +JOINT CALLER POSTFILTER,a_82,19 Homozygous,163488 +JOINT CALLER POSTFILTER,a_82,19 Het/Hom ratio,0.810 +JOINT CALLER POSTFILTER,a_82,20 Heterozygous,144930 +JOINT CALLER POSTFILTER,a_82,20 Homozygous,196345 +JOINT CALLER POSTFILTER,a_82,20 Het/Hom ratio,0.738 +JOINT CALLER POSTFILTER,a_82,21 Heterozygous,163054 +JOINT CALLER POSTFILTER,a_82,21 Homozygous,124546 +JOINT CALLER POSTFILTER,a_82,21 Het/Hom ratio,1.309 +JOINT CALLER POSTFILTER,a_82,22 Heterozygous,151984 +JOINT CALLER POSTFILTER,a_82,22 Homozygous,169063 +JOINT CALLER POSTFILTER,a_82,22 Het/Hom ratio,0.898 +JOINT CALLER POSTFILTER,a_82,X Heterozygous,179956 +JOINT CALLER POSTFILTER,a_82,X Homozygous,193141 +JOINT CALLER POSTFILTER,a_82,X Het/Hom ratio,0.931 +JOINT CALLER POSTFILTER,a_82,Y Heterozygous,197661 +JOINT CALLER POSTFILTER,a_82,Y Homozygous,108767 +JOINT CALLER POSTFILTER,a_82,Y Het/Hom ratio,1.817 +JOINT CALLER PREFILTER,evlsCb_11,1 Heterozygous,151926 +JOINT CALLER PREFILTER,evlsCb_11,1 Homozygous,102463 +JOINT CALLER PREFILTER,evlsCb_11,1 Het/Hom ratio,1.482 +JOINT CALLER PREFILTER,evlsCb_11,2 Heterozygous,152567 +JOINT CALLER PREFILTER,evlsCb_11,2 Homozygous,184514 +JOINT CALLER PREFILTER,evlsCb_11,2 Het/Hom ratio,0.826 +JOINT CALLER PREFILTER,evlsCb_11,3 Heterozygous,149075 +JOINT CALLER PREFILTER,evlsCb_11,3 Homozygous,133302 +JOINT CALLER PREFILTER,evlsCb_11,3 Het/Hom ratio,1.118 +JOINT CALLER PREFILTER,evlsCb_11,4 Heterozygous,111219 +JOINT CALLER PREFILTER,evlsCb_11,4 Homozygous,150271 +JOINT CALLER PREFILTER,evlsCb_11,4 Het/Hom ratio,0.740 +JOINT CALLER PREFILTER,evlsCb_11,5 Heterozygous,137552 +JOINT CALLER PREFILTER,evlsCb_11,5 Homozygous,147571 +JOINT CALLER PREFILTER,evlsCb_11,5 Het/Hom ratio,0.932 +JOINT CALLER PREFILTER,evlsCb_11,6 Heterozygous,159367 +JOINT CALLER PREFILTER,evlsCb_11,6 Homozygous,114473 +JOINT CALLER PREFILTER,evlsCb_11,6 Het/Hom ratio,1.392 +JOINT CALLER PREFILTER,evlsCb_11,7 Heterozygous,194702 +JOINT CALLER PREFILTER,evlsCb_11,7 Homozygous,143884 +JOINT CALLER PREFILTER,evlsCb_11,7 Het/Hom ratio,1.353 +JOINT CALLER PREFILTER,evlsCb_11,8 Heterozygous,131768 +JOINT CALLER PREFILTER,evlsCb_11,8 Homozygous,106733 +JOINT CALLER PREFILTER,evlsCb_11,8 Het/Hom ratio,1.234 +JOINT CALLER PREFILTER,evlsCb_11,9 Heterozygous,112442 +JOINT CALLER PREFILTER,evlsCb_11,9 Homozygous,191510 +JOINT CALLER PREFILTER,evlsCb_11,9 Het/Hom ratio,0.587 +JOINT CALLER PREFILTER,evlsCb_11,10 Heterozygous,182944 +JOINT CALLER PREFILTER,evlsCb_11,10 Homozygous,131856 +JOINT CALLER PREFILTER,evlsCb_11,10 Het/Hom ratio,1.387 +JOINT CALLER PREFILTER,evlsCb_11,11 Heterozygous,182718 +JOINT CALLER PREFILTER,evlsCb_11,11 Homozygous,103640 +JOINT CALLER PREFILTER,evlsCb_11,11 Het/Hom ratio,1.763 +JOINT CALLER PREFILTER,evlsCb_11,12 Heterozygous,178022 +JOINT CALLER PREFILTER,evlsCb_11,12 Homozygous,139631 +JOINT CALLER PREFILTER,evlsCb_11,12 Het/Hom ratio,1.274 +JOINT CALLER PREFILTER,evlsCb_11,13 Heterozygous,182737 +JOINT CALLER PREFILTER,evlsCb_11,13 Homozygous,145970 +JOINT CALLER PREFILTER,evlsCb_11,13 Het/Hom ratio,1.251 +JOINT CALLER PREFILTER,evlsCb_11,14 Heterozygous,196528 +JOINT CALLER PREFILTER,evlsCb_11,14 Homozygous,182298 +JOINT CALLER PREFILTER,evlsCb_11,14 Het/Hom ratio,1.078 +JOINT CALLER PREFILTER,evlsCb_11,15 Heterozygous,109096 +JOINT CALLER PREFILTER,evlsCb_11,15 Homozygous,149304 +JOINT CALLER PREFILTER,evlsCb_11,15 Het/Hom ratio,0.730 +JOINT CALLER PREFILTER,evlsCb_11,16 Heterozygous,152614 +JOINT CALLER PREFILTER,evlsCb_11,16 Homozygous,152434 +JOINT CALLER PREFILTER,evlsCb_11,16 Het/Hom ratio,1.001 +JOINT CALLER PREFILTER,evlsCb_11,17 Heterozygous,132639 +JOINT CALLER PREFILTER,evlsCb_11,17 Homozygous,139800 +JOINT CALLER PREFILTER,evlsCb_11,17 Het/Hom ratio,0.948 +JOINT CALLER PREFILTER,evlsCb_11,18 Heterozygous,167635 +JOINT CALLER PREFILTER,evlsCb_11,18 Homozygous,128647 +JOINT CALLER PREFILTER,evlsCb_11,18 Het/Hom ratio,1.303 +JOINT CALLER PREFILTER,evlsCb_11,19 Heterozygous,137971 +JOINT CALLER PREFILTER,evlsCb_11,19 Homozygous,194115 +JOINT CALLER PREFILTER,evlsCb_11,19 Het/Hom ratio,0.710 +JOINT CALLER PREFILTER,evlsCb_11,20 Heterozygous,149016 +JOINT CALLER PREFILTER,evlsCb_11,20 Homozygous,164840 +JOINT CALLER PREFILTER,evlsCb_11,20 Het/Hom ratio,0.904 +JOINT CALLER PREFILTER,evlsCb_11,21 Heterozygous,126839 +JOINT CALLER PREFILTER,evlsCb_11,21 Homozygous,112425 +JOINT CALLER PREFILTER,evlsCb_11,21 Het/Hom ratio,1.128 +JOINT CALLER PREFILTER,evlsCb_11,22 Heterozygous,110989 +JOINT CALLER PREFILTER,evlsCb_11,22 Homozygous,118147 +JOINT CALLER PREFILTER,evlsCb_11,22 Het/Hom ratio,0.939 +JOINT CALLER PREFILTER,evlsCb_11,X Heterozygous,106805 +JOINT CALLER PREFILTER,evlsCb_11,X Homozygous,140379 +JOINT CALLER PREFILTER,evlsCb_11,X Het/Hom ratio,0.760 +JOINT CALLER PREFILTER,evlsCb_11,Y Heterozygous,116602 +JOINT CALLER PREFILTER,evlsCb_11,Y Homozygous,135652 +JOINT CALLER PREFILTER,evlsCb_11,Y Het/Hom ratio,0.859 +JOINT CALLER POSTFILTER,evlsCb_11,1 Heterozygous,159044 +JOINT CALLER POSTFILTER,evlsCb_11,1 Homozygous,182119 +JOINT CALLER POSTFILTER,evlsCb_11,1 Het/Hom ratio,0.873 +JOINT CALLER POSTFILTER,evlsCb_11,2 Heterozygous,177518 +JOINT CALLER POSTFILTER,evlsCb_11,2 Homozygous,128022 +JOINT CALLER POSTFILTER,evlsCb_11,2 Het/Hom ratio,1.386 +JOINT CALLER POSTFILTER,evlsCb_11,3 Heterozygous,193456 +JOINT CALLER POSTFILTER,evlsCb_11,3 Homozygous,183882 +JOINT CALLER POSTFILTER,evlsCb_11,3 Het/Hom ratio,1.052 +JOINT CALLER POSTFILTER,evlsCb_11,4 Heterozygous,148235 +JOINT CALLER POSTFILTER,evlsCb_11,4 Homozygous,143807 +JOINT CALLER POSTFILTER,evlsCb_11,4 Het/Hom ratio,1.030 +JOINT CALLER POSTFILTER,evlsCb_11,5 Heterozygous,123002 +JOINT CALLER POSTFILTER,evlsCb_11,5 Homozygous,199535 +JOINT CALLER POSTFILTER,evlsCb_11,5 Het/Hom ratio,0.616 +JOINT CALLER POSTFILTER,evlsCb_11,6 Heterozygous,113346 +JOINT CALLER POSTFILTER,evlsCb_11,6 Homozygous,135680 +JOINT CALLER POSTFILTER,evlsCb_11,6 Het/Hom ratio,0.835 +JOINT CALLER POSTFILTER,evlsCb_11,7 Heterozygous,198283 +JOINT CALLER POSTFILTER,evlsCb_11,7 Homozygous,111299 +JOINT CALLER POSTFILTER,evlsCb_11,7 Het/Hom ratio,1.781 +JOINT CALLER POSTFILTER,evlsCb_11,8 Heterozygous,194720 +JOINT CALLER POSTFILTER,evlsCb_11,8 Homozygous,168167 +JOINT CALLER POSTFILTER,evlsCb_11,8 Het/Hom ratio,1.157 +JOINT CALLER POSTFILTER,evlsCb_11,9 Heterozygous,113745 +JOINT CALLER POSTFILTER,evlsCb_11,9 Homozygous,129175 +JOINT CALLER POSTFILTER,evlsCb_11,9 Het/Hom ratio,0.880 +JOINT CALLER POSTFILTER,evlsCb_11,10 Heterozygous,169747 +JOINT CALLER POSTFILTER,evlsCb_11,10 Homozygous,118960 +JOINT CALLER POSTFILTER,evlsCb_11,10 Het/Hom ratio,1.426 +JOINT CALLER POSTFILTER,evlsCb_11,11 Heterozygous,138564 +JOINT CALLER POSTFILTER,evlsCb_11,11 Homozygous,101743 +JOINT CALLER POSTFILTER,evlsCb_11,11 Het/Hom ratio,1.361 +JOINT CALLER POSTFILTER,evlsCb_11,12 Heterozygous,168939 +JOINT CALLER POSTFILTER,evlsCb_11,12 Homozygous,137098 +JOINT CALLER POSTFILTER,evlsCb_11,12 Het/Hom ratio,1.232 +JOINT CALLER POSTFILTER,evlsCb_11,13 Heterozygous,166462 +JOINT CALLER POSTFILTER,evlsCb_11,13 Homozygous,157291 +JOINT CALLER POSTFILTER,evlsCb_11,13 Het/Hom ratio,1.058 +JOINT CALLER POSTFILTER,evlsCb_11,14 Heterozygous,183249 +JOINT CALLER POSTFILTER,evlsCb_11,14 Homozygous,169008 +JOINT CALLER POSTFILTER,evlsCb_11,14 Het/Hom ratio,1.084 +JOINT CALLER POSTFILTER,evlsCb_11,15 Heterozygous,182550 +JOINT CALLER POSTFILTER,evlsCb_11,15 Homozygous,103756 +JOINT CALLER POSTFILTER,evlsCb_11,15 Het/Hom ratio,1.759 +JOINT CALLER POSTFILTER,evlsCb_11,16 Heterozygous,172722 +JOINT CALLER POSTFILTER,evlsCb_11,16 Homozygous,197708 +JOINT CALLER POSTFILTER,evlsCb_11,16 Het/Hom ratio,0.873 +JOINT CALLER POSTFILTER,evlsCb_11,17 Heterozygous,165818 +JOINT CALLER POSTFILTER,evlsCb_11,17 Homozygous,159220 +JOINT CALLER POSTFILTER,evlsCb_11,17 Het/Hom ratio,1.041 +JOINT CALLER POSTFILTER,evlsCb_11,18 Heterozygous,169093 +JOINT CALLER POSTFILTER,evlsCb_11,18 Homozygous,163313 +JOINT CALLER POSTFILTER,evlsCb_11,18 Het/Hom ratio,1.035 +JOINT CALLER POSTFILTER,evlsCb_11,19 Heterozygous,100573 +JOINT CALLER POSTFILTER,evlsCb_11,19 Homozygous,109120 +JOINT CALLER POSTFILTER,evlsCb_11,19 Het/Hom ratio,0.921 +JOINT CALLER POSTFILTER,evlsCb_11,20 Heterozygous,140334 +JOINT CALLER POSTFILTER,evlsCb_11,20 Homozygous,140958 +JOINT CALLER POSTFILTER,evlsCb_11,20 Het/Hom ratio,0.995 +JOINT CALLER POSTFILTER,evlsCb_11,21 Heterozygous,123647 +JOINT CALLER POSTFILTER,evlsCb_11,21 Homozygous,122053 +JOINT CALLER POSTFILTER,evlsCb_11,21 Het/Hom ratio,1.013 +JOINT CALLER POSTFILTER,evlsCb_11,22 Heterozygous,171101 +JOINT CALLER POSTFILTER,evlsCb_11,22 Homozygous,145534 +JOINT CALLER POSTFILTER,evlsCb_11,22 Het/Hom ratio,1.175 +JOINT CALLER POSTFILTER,evlsCb_11,X Heterozygous,196007 +JOINT CALLER POSTFILTER,evlsCb_11,X Homozygous,116634 +JOINT CALLER POSTFILTER,evlsCb_11,X Het/Hom ratio,1.680 +JOINT CALLER POSTFILTER,evlsCb_11,Y Heterozygous,109398 +JOINT CALLER POSTFILTER,evlsCb_11,Y Homozygous,147285 +JOINT CALLER POSTFILTER,evlsCb_11,Y Het/Hom ratio,0.742 diff --git a/data/modules/dragen/PR1915/cX_29846_dragen.vc_hethom_ratio_metrics.csv b/data/modules/dragen/PR1915/cX_29846_dragen.vc_hethom_ratio_metrics.csv new file mode 100644 index 00000000..b3f5b7b9 --- /dev/null +++ b/data/modules/dragen/PR1915/cX_29846_dragen.vc_hethom_ratio_metrics.csv @@ -0,0 +1,72 @@ +VARIANT CALLER POSTFILTER,cX_29846,1 Heterozygous,137135 +VARIANT CALLER POSTFILTER,cX_29846,1 Homozygous,170675 +VARIANT CALLER POSTFILTER,cX_29846,1 Het/Hom ratio,0.803 +VARIANT CALLER POSTFILTER,cX_29846,2 Heterozygous,154691 +VARIANT CALLER POSTFILTER,cX_29846,2 Homozygous,125912 +VARIANT CALLER POSTFILTER,cX_29846,2 Het/Hom ratio,1.228 +VARIANT CALLER POSTFILTER,cX_29846,3 Heterozygous,102008 +VARIANT CALLER POSTFILTER,cX_29846,3 Homozygous,157085 +VARIANT CALLER POSTFILTER,cX_29846,3 Het/Hom ratio,0.649 +VARIANT CALLER POSTFILTER,cX_29846,4 Heterozygous,163914 +VARIANT CALLER POSTFILTER,cX_29846,4 Homozygous,106955 +VARIANT CALLER POSTFILTER,cX_29846,4 Het/Hom ratio,1.532 +VARIANT CALLER POSTFILTER,cX_29846,5 Heterozygous,137028 +VARIANT CALLER POSTFILTER,cX_29846,5 Homozygous,110356 +VARIANT CALLER POSTFILTER,cX_29846,5 Het/Hom ratio,1.241 +VARIANT CALLER POSTFILTER,cX_29846,6 Heterozygous,183870 +VARIANT CALLER POSTFILTER,cX_29846,6 Homozygous,157316 +VARIANT CALLER POSTFILTER,cX_29846,6 Het/Hom ratio,1.168 +VARIANT CALLER POSTFILTER,cX_29846,7 Heterozygous,150793 +VARIANT CALLER POSTFILTER,cX_29846,7 Homozygous,143569 +VARIANT CALLER POSTFILTER,cX_29846,7 Het/Hom ratio,1.050 +VARIANT CALLER POSTFILTER,cX_29846,8 Heterozygous,135746 +VARIANT CALLER POSTFILTER,cX_29846,8 Homozygous,109661 +VARIANT CALLER POSTFILTER,cX_29846,8 Het/Hom ratio,1.237 +VARIANT CALLER POSTFILTER,cX_29846,9 Heterozygous,134380 +VARIANT CALLER POSTFILTER,cX_29846,9 Homozygous,110034 +VARIANT CALLER POSTFILTER,cX_29846,9 Het/Hom ratio,1.221 +VARIANT CALLER POSTFILTER,cX_29846,10 Heterozygous,103351 +VARIANT CALLER POSTFILTER,cX_29846,10 Homozygous,176823 +VARIANT CALLER POSTFILTER,cX_29846,10 Het/Hom ratio,0.584 +VARIANT CALLER POSTFILTER,cX_29846,11 Heterozygous,132427 +VARIANT CALLER POSTFILTER,cX_29846,11 Homozygous,130967 +VARIANT CALLER POSTFILTER,cX_29846,11 Het/Hom ratio,1.011 +VARIANT CALLER POSTFILTER,cX_29846,12 Heterozygous,179893 +VARIANT CALLER POSTFILTER,cX_29846,12 Homozygous,122256 +VARIANT CALLER POSTFILTER,cX_29846,12 Het/Hom ratio,1.471 +VARIANT CALLER POSTFILTER,cX_29846,13 Heterozygous,145688 +VARIANT CALLER POSTFILTER,cX_29846,13 Homozygous,192534 +VARIANT CALLER POSTFILTER,cX_29846,13 Het/Hom ratio,0.756 +VARIANT CALLER POSTFILTER,cX_29846,14 Heterozygous,121498 +VARIANT CALLER POSTFILTER,cX_29846,14 Homozygous,163133 +VARIANT CALLER POSTFILTER,cX_29846,14 Het/Hom ratio,0.744 +VARIANT CALLER POSTFILTER,cX_29846,15 Heterozygous,139362 +VARIANT CALLER POSTFILTER,cX_29846,15 Homozygous,134025 +VARIANT CALLER POSTFILTER,cX_29846,15 Het/Hom ratio,1.039 +VARIANT CALLER POSTFILTER,cX_29846,16 Heterozygous,123848 +VARIANT CALLER POSTFILTER,cX_29846,16 Homozygous,183013 +VARIANT CALLER POSTFILTER,cX_29846,16 Het/Hom ratio,0.676 +VARIANT CALLER POSTFILTER,cX_29846,17 Heterozygous,100332 +VARIANT CALLER POSTFILTER,cX_29846,17 Homozygous,113426 +VARIANT CALLER POSTFILTER,cX_29846,17 Het/Hom ratio,0.884 +VARIANT CALLER POSTFILTER,cX_29846,18 Heterozygous,108982 +VARIANT CALLER POSTFILTER,cX_29846,18 Homozygous,100666 +VARIANT CALLER POSTFILTER,cX_29846,18 Het/Hom ratio,1.082 +VARIANT CALLER POSTFILTER,cX_29846,19 Heterozygous,136390 +VARIANT CALLER POSTFILTER,cX_29846,19 Homozygous,137425 +VARIANT CALLER POSTFILTER,cX_29846,19 Het/Hom ratio,0.992 +VARIANT CALLER POSTFILTER,cX_29846,20 Heterozygous,170566 +VARIANT CALLER POSTFILTER,cX_29846,20 Homozygous,197756 +VARIANT CALLER POSTFILTER,cX_29846,20 Het/Hom ratio,0.862 +VARIANT CALLER POSTFILTER,cX_29846,21 Heterozygous,117878 +VARIANT CALLER POSTFILTER,cX_29846,21 Homozygous,176447 +VARIANT CALLER POSTFILTER,cX_29846,21 Het/Hom ratio,0.668 +VARIANT CALLER POSTFILTER,cX_29846,22 Heterozygous,143298 +VARIANT CALLER POSTFILTER,cX_29846,22 Homozygous,165587 +VARIANT CALLER POSTFILTER,cX_29846,22 Het/Hom ratio,0.865 +VARIANT CALLER POSTFILTER,cX_29846,X Heterozygous,195491 +VARIANT CALLER POSTFILTER,cX_29846,X Homozygous,160974 +VARIANT CALLER POSTFILTER,cX_29846,X Het/Hom ratio,1.214 +VARIANT CALLER POSTFILTER,cX_29846,Y Heterozygous,0 +VARIANT CALLER POSTFILTER,cX_29846,Y Homozygous,0 +VARIANT CALLER POSTFILTER,cX_29846,Y Het/Hom ratio,inf diff --git a/data/modules/dragen/PR1915/eF_621_dragen.vc_hethom_ratio_metrics.csv b/data/modules/dragen/PR1915/eF_621_dragen.vc_hethom_ratio_metrics.csv new file mode 100644 index 00000000..ce84bfb1 --- /dev/null +++ b/data/modules/dragen/PR1915/eF_621_dragen.vc_hethom_ratio_metrics.csv @@ -0,0 +1,432 @@ +JOINT CALLER PREFILTER,eF_621,1 Heterozygous,190654 +JOINT CALLER PREFILTER,eF_621,1 Homozygous,104666 +JOINT CALLER PREFILTER,eF_621,1 Het/Hom ratio,1.821 +JOINT CALLER PREFILTER,eF_621,2 Heterozygous,177924 +JOINT CALLER PREFILTER,eF_621,2 Homozygous,186874 +JOINT CALLER PREFILTER,eF_621,2 Het/Hom ratio,0.952 +JOINT CALLER PREFILTER,eF_621,3 Heterozygous,122750 +JOINT CALLER PREFILTER,eF_621,3 Homozygous,190298 +JOINT CALLER PREFILTER,eF_621,3 Het/Hom ratio,0.645 +JOINT CALLER PREFILTER,eF_621,4 Heterozygous,120332 +JOINT CALLER PREFILTER,eF_621,4 Homozygous,138914 +JOINT CALLER PREFILTER,eF_621,4 Het/Hom ratio,0.866 +JOINT CALLER PREFILTER,eF_621,5 Heterozygous,116892 +JOINT CALLER PREFILTER,eF_621,5 Homozygous,152303 +JOINT CALLER PREFILTER,eF_621,5 Het/Hom ratio,0.767 +JOINT CALLER PREFILTER,eF_621,6 Heterozygous,174483 +JOINT CALLER PREFILTER,eF_621,6 Homozygous,143706 +JOINT CALLER PREFILTER,eF_621,6 Het/Hom ratio,1.214 +JOINT CALLER PREFILTER,eF_621,7 Heterozygous,131218 +JOINT CALLER PREFILTER,eF_621,7 Homozygous,116852 +JOINT CALLER PREFILTER,eF_621,7 Het/Hom ratio,1.122 +JOINT CALLER PREFILTER,eF_621,8 Heterozygous,186481 +JOINT CALLER PREFILTER,eF_621,8 Homozygous,126790 +JOINT CALLER PREFILTER,eF_621,8 Het/Hom ratio,1.470 +JOINT CALLER PREFILTER,eF_621,9 Heterozygous,132219 +JOINT CALLER PREFILTER,eF_621,9 Homozygous,100996 +JOINT CALLER PREFILTER,eF_621,9 Het/Hom ratio,1.309 +JOINT CALLER PREFILTER,eF_621,10 Heterozygous,102166 +JOINT CALLER PREFILTER,eF_621,10 Homozygous,165492 +JOINT CALLER PREFILTER,eF_621,10 Het/Hom ratio,0.617 +JOINT CALLER PREFILTER,eF_621,11 Heterozygous,131090 +JOINT CALLER PREFILTER,eF_621,11 Homozygous,117063 +JOINT CALLER PREFILTER,eF_621,11 Het/Hom ratio,1.119 +JOINT CALLER PREFILTER,eF_621,12 Heterozygous,101618 +JOINT CALLER PREFILTER,eF_621,12 Homozygous,181116 +JOINT CALLER PREFILTER,eF_621,12 Het/Hom ratio,0.561 +JOINT CALLER PREFILTER,eF_621,13 Heterozygous,171176 +JOINT CALLER PREFILTER,eF_621,13 Homozygous,128385 +JOINT CALLER PREFILTER,eF_621,13 Het/Hom ratio,1.333 +JOINT CALLER PREFILTER,eF_621,14 Heterozygous,159140 +JOINT CALLER PREFILTER,eF_621,14 Homozygous,117553 +JOINT CALLER PREFILTER,eF_621,14 Het/Hom ratio,1.353 +JOINT CALLER PREFILTER,eF_621,15 Heterozygous,111612 +JOINT CALLER PREFILTER,eF_621,15 Homozygous,149473 +JOINT CALLER PREFILTER,eF_621,15 Het/Hom ratio,0.746 +JOINT CALLER PREFILTER,eF_621,16 Heterozygous,153552 +JOINT CALLER PREFILTER,eF_621,16 Homozygous,187093 +JOINT CALLER PREFILTER,eF_621,16 Het/Hom ratio,0.820 +JOINT CALLER PREFILTER,eF_621,17 Heterozygous,127816 +JOINT CALLER PREFILTER,eF_621,17 Homozygous,119848 +JOINT CALLER PREFILTER,eF_621,17 Het/Hom ratio,1.066 +JOINT CALLER PREFILTER,eF_621,18 Heterozygous,190300 +JOINT CALLER PREFILTER,eF_621,18 Homozygous,118170 +JOINT CALLER PREFILTER,eF_621,18 Het/Hom ratio,1.610 +JOINT CALLER PREFILTER,eF_621,19 Heterozygous,133028 +JOINT CALLER PREFILTER,eF_621,19 Homozygous,126444 +JOINT CALLER PREFILTER,eF_621,19 Het/Hom ratio,1.052 +JOINT CALLER PREFILTER,eF_621,20 Heterozygous,161119 +JOINT CALLER PREFILTER,eF_621,20 Homozygous,136490 +JOINT CALLER PREFILTER,eF_621,20 Het/Hom ratio,1.180 +JOINT CALLER PREFILTER,eF_621,21 Heterozygous,101612 +JOINT CALLER PREFILTER,eF_621,21 Homozygous,113884 +JOINT CALLER PREFILTER,eF_621,21 Het/Hom ratio,0.892 +JOINT CALLER PREFILTER,eF_621,22 Heterozygous,198213 +JOINT CALLER PREFILTER,eF_621,22 Homozygous,132073 +JOINT CALLER PREFILTER,eF_621,22 Het/Hom ratio,1.500 +JOINT CALLER PREFILTER,eF_621,X Heterozygous,4611 +JOINT CALLER PREFILTER,eF_621,X Homozygous,159 +JOINT CALLER PREFILTER,eF_621,X Het/Hom ratio,29.00 +JOINT CALLER PREFILTER,eF_621,Y Heterozygous,4263 +JOINT CALLER PREFILTER,eF_621,Y Homozygous,0 +JOINT CALLER PREFILTER,eF_621,Y Het/Hom ratio,inf +JOINT CALLER POSTFILTER,eF_621,1 Heterozygous,162815 +JOINT CALLER POSTFILTER,eF_621,1 Homozygous,189911 +JOINT CALLER POSTFILTER,eF_621,1 Het/Hom ratio,0.857 +JOINT CALLER POSTFILTER,eF_621,2 Heterozygous,190907 +JOINT CALLER POSTFILTER,eF_621,2 Homozygous,114802 +JOINT CALLER POSTFILTER,eF_621,2 Het/Hom ratio,1.662 +JOINT CALLER POSTFILTER,eF_621,3 Heterozygous,155607 +JOINT CALLER POSTFILTER,eF_621,3 Homozygous,122031 +JOINT CALLER POSTFILTER,eF_621,3 Het/Hom ratio,1.275 +JOINT CALLER POSTFILTER,eF_621,4 Heterozygous,180955 +JOINT CALLER POSTFILTER,eF_621,4 Homozygous,192688 +JOINT CALLER POSTFILTER,eF_621,4 Het/Hom ratio,0.939 +JOINT CALLER POSTFILTER,eF_621,5 Heterozygous,140104 +JOINT CALLER POSTFILTER,eF_621,5 Homozygous,126929 +JOINT CALLER POSTFILTER,eF_621,5 Het/Hom ratio,1.103 +JOINT CALLER POSTFILTER,eF_621,6 Heterozygous,183640 +JOINT CALLER POSTFILTER,eF_621,6 Homozygous,132597 +JOINT CALLER POSTFILTER,eF_621,6 Het/Hom ratio,1.384 +JOINT CALLER POSTFILTER,eF_621,7 Heterozygous,137754 +JOINT CALLER POSTFILTER,eF_621,7 Homozygous,134762 +JOINT CALLER POSTFILTER,eF_621,7 Het/Hom ratio,1.022 +JOINT CALLER POSTFILTER,eF_621,8 Heterozygous,150523 +JOINT CALLER POSTFILTER,eF_621,8 Homozygous,130117 +JOINT CALLER POSTFILTER,eF_621,8 Het/Hom ratio,1.156 +JOINT CALLER POSTFILTER,eF_621,9 Heterozygous,159377 +JOINT CALLER POSTFILTER,eF_621,9 Homozygous,115217 +JOINT CALLER POSTFILTER,eF_621,9 Het/Hom ratio,1.383 +JOINT CALLER POSTFILTER,eF_621,10 Heterozygous,140641 +JOINT CALLER POSTFILTER,eF_621,10 Homozygous,147231 +JOINT CALLER POSTFILTER,eF_621,10 Het/Hom ratio,0.955 +JOINT CALLER POSTFILTER,eF_621,11 Heterozygous,125443 +JOINT CALLER POSTFILTER,eF_621,11 Homozygous,160851 +JOINT CALLER POSTFILTER,eF_621,11 Het/Hom ratio,0.779 +JOINT CALLER POSTFILTER,eF_621,12 Heterozygous,187610 +JOINT CALLER POSTFILTER,eF_621,12 Homozygous,133881 +JOINT CALLER POSTFILTER,eF_621,12 Het/Hom ratio,1.401 +JOINT CALLER POSTFILTER,eF_621,13 Heterozygous,113385 +JOINT CALLER POSTFILTER,eF_621,13 Homozygous,141914 +JOINT CALLER POSTFILTER,eF_621,13 Het/Hom ratio,0.798 +JOINT CALLER POSTFILTER,eF_621,14 Heterozygous,137567 +JOINT CALLER POSTFILTER,eF_621,14 Homozygous,190263 +JOINT CALLER POSTFILTER,eF_621,14 Het/Hom ratio,0.723 +JOINT CALLER POSTFILTER,eF_621,15 Heterozygous,138867 +JOINT CALLER POSTFILTER,eF_621,15 Homozygous,161349 +JOINT CALLER POSTFILTER,eF_621,15 Het/Hom ratio,0.860 +JOINT CALLER POSTFILTER,eF_621,16 Heterozygous,111040 +JOINT CALLER POSTFILTER,eF_621,16 Homozygous,147903 +JOINT CALLER POSTFILTER,eF_621,16 Het/Hom ratio,0.750 +JOINT CALLER POSTFILTER,eF_621,17 Heterozygous,110213 +JOINT CALLER POSTFILTER,eF_621,17 Homozygous,167402 +JOINT CALLER POSTFILTER,eF_621,17 Het/Hom ratio,0.658 +JOINT CALLER POSTFILTER,eF_621,18 Heterozygous,119453 +JOINT CALLER POSTFILTER,eF_621,18 Homozygous,185227 +JOINT CALLER POSTFILTER,eF_621,18 Het/Hom ratio,0.644 +JOINT CALLER POSTFILTER,eF_621,19 Heterozygous,180573 +JOINT CALLER POSTFILTER,eF_621,19 Homozygous,116811 +JOINT CALLER POSTFILTER,eF_621,19 Het/Hom ratio,1.545 +JOINT CALLER POSTFILTER,eF_621,20 Heterozygous,195979 +JOINT CALLER POSTFILTER,eF_621,20 Homozygous,138865 +JOINT CALLER POSTFILTER,eF_621,20 Het/Hom ratio,1.411 +JOINT CALLER POSTFILTER,eF_621,21 Heterozygous,129902 +JOINT CALLER POSTFILTER,eF_621,21 Homozygous,136265 +JOINT CALLER POSTFILTER,eF_621,21 Het/Hom ratio,0.953 +JOINT CALLER POSTFILTER,eF_621,22 Heterozygous,149579 +JOINT CALLER POSTFILTER,eF_621,22 Homozygous,141270 +JOINT CALLER POSTFILTER,eF_621,22 Het/Hom ratio,1.058 +JOINT CALLER POSTFILTER,eF_621,X Heterozygous,105818 +JOINT CALLER POSTFILTER,eF_621,X Homozygous,135844 +JOINT CALLER POSTFILTER,eF_621,X Het/Hom ratio,0.778 +JOINT CALLER POSTFILTER,eF_621,Y Heterozygous,136005 +JOINT CALLER POSTFILTER,eF_621,Y Homozygous,130913 +JOINT CALLER POSTFILTER,eF_621,Y Het/Hom ratio,1.038 +JOINT CALLER PREFILTER,HvCpxi_59,1 Heterozygous,162072 +JOINT CALLER PREFILTER,HvCpxi_59,1 Homozygous,183736 +JOINT CALLER PREFILTER,HvCpxi_59,1 Het/Hom ratio,0.882 +JOINT CALLER PREFILTER,HvCpxi_59,2 Heterozygous,187626 +JOINT CALLER PREFILTER,HvCpxi_59,2 Homozygous,144536 +JOINT CALLER PREFILTER,HvCpxi_59,2 Het/Hom ratio,1.298 +JOINT CALLER PREFILTER,HvCpxi_59,3 Heterozygous,152009 +JOINT CALLER PREFILTER,HvCpxi_59,3 Homozygous,172997 +JOINT CALLER PREFILTER,HvCpxi_59,3 Het/Hom ratio,0.878 +JOINT CALLER PREFILTER,HvCpxi_59,4 Heterozygous,192407 +JOINT CALLER PREFILTER,HvCpxi_59,4 Homozygous,110674 +JOINT CALLER PREFILTER,HvCpxi_59,4 Het/Hom ratio,1.738 +JOINT CALLER PREFILTER,HvCpxi_59,5 Heterozygous,162461 +JOINT CALLER PREFILTER,HvCpxi_59,5 Homozygous,120143 +JOINT CALLER PREFILTER,HvCpxi_59,5 Het/Hom ratio,1.352 +JOINT CALLER PREFILTER,HvCpxi_59,6 Heterozygous,179287 +JOINT CALLER PREFILTER,HvCpxi_59,6 Homozygous,126350 +JOINT CALLER PREFILTER,HvCpxi_59,6 Het/Hom ratio,1.418 +JOINT CALLER PREFILTER,HvCpxi_59,7 Heterozygous,162241 +JOINT CALLER PREFILTER,HvCpxi_59,7 Homozygous,155456 +JOINT CALLER PREFILTER,HvCpxi_59,7 Het/Hom ratio,1.043 +JOINT CALLER PREFILTER,HvCpxi_59,8 Heterozygous,140965 +JOINT CALLER PREFILTER,HvCpxi_59,8 Homozygous,163404 +JOINT CALLER PREFILTER,HvCpxi_59,8 Het/Hom ratio,0.862 +JOINT CALLER PREFILTER,HvCpxi_59,9 Heterozygous,167914 +JOINT CALLER PREFILTER,HvCpxi_59,9 Homozygous,152320 +JOINT CALLER PREFILTER,HvCpxi_59,9 Het/Hom ratio,1.102 +JOINT CALLER PREFILTER,HvCpxi_59,10 Heterozygous,171652 +JOINT CALLER PREFILTER,HvCpxi_59,10 Homozygous,147243 +JOINT CALLER PREFILTER,HvCpxi_59,10 Het/Hom ratio,1.165 +JOINT CALLER PREFILTER,HvCpxi_59,11 Heterozygous,121948 +JOINT CALLER PREFILTER,HvCpxi_59,11 Homozygous,149851 +JOINT CALLER PREFILTER,HvCpxi_59,11 Het/Hom ratio,0.813 +JOINT CALLER PREFILTER,HvCpxi_59,12 Heterozygous,174555 +JOINT CALLER PREFILTER,HvCpxi_59,12 Homozygous,155773 +JOINT CALLER PREFILTER,HvCpxi_59,12 Het/Hom ratio,1.120 +JOINT CALLER PREFILTER,HvCpxi_59,13 Heterozygous,169506 +JOINT CALLER PREFILTER,HvCpxi_59,13 Homozygous,135162 +JOINT CALLER PREFILTER,HvCpxi_59,13 Het/Hom ratio,1.254 +JOINT CALLER PREFILTER,HvCpxi_59,14 Heterozygous,109059 +JOINT CALLER PREFILTER,HvCpxi_59,14 Homozygous,139610 +JOINT CALLER PREFILTER,HvCpxi_59,14 Het/Hom ratio,0.781 +JOINT CALLER PREFILTER,HvCpxi_59,15 Heterozygous,111269 +JOINT CALLER PREFILTER,HvCpxi_59,15 Homozygous,156268 +JOINT CALLER PREFILTER,HvCpxi_59,15 Het/Hom ratio,0.712 +JOINT CALLER PREFILTER,HvCpxi_59,16 Heterozygous,170275 +JOINT CALLER PREFILTER,HvCpxi_59,16 Homozygous,126836 +JOINT CALLER PREFILTER,HvCpxi_59,16 Het/Hom ratio,1.342 +JOINT CALLER PREFILTER,HvCpxi_59,17 Heterozygous,116536 +JOINT CALLER PREFILTER,HvCpxi_59,17 Homozygous,106430 +JOINT CALLER PREFILTER,HvCpxi_59,17 Het/Hom ratio,1.094 +JOINT CALLER PREFILTER,HvCpxi_59,18 Heterozygous,104534 +JOINT CALLER PREFILTER,HvCpxi_59,18 Homozygous,169271 +JOINT CALLER PREFILTER,HvCpxi_59,18 Het/Hom ratio,0.617 +JOINT CALLER PREFILTER,HvCpxi_59,19 Heterozygous,193355 +JOINT CALLER PREFILTER,HvCpxi_59,19 Homozygous,152153 +JOINT CALLER PREFILTER,HvCpxi_59,19 Het/Hom ratio,1.270 +JOINT CALLER PREFILTER,HvCpxi_59,20 Heterozygous,189557 +JOINT CALLER PREFILTER,HvCpxi_59,20 Homozygous,115180 +JOINT CALLER PREFILTER,HvCpxi_59,20 Het/Hom ratio,1.645 +JOINT CALLER PREFILTER,HvCpxi_59,21 Heterozygous,153282 +JOINT CALLER PREFILTER,HvCpxi_59,21 Homozygous,154311 +JOINT CALLER PREFILTER,HvCpxi_59,21 Het/Hom ratio,0.993 +JOINT CALLER PREFILTER,HvCpxi_59,22 Heterozygous,155024 +JOINT CALLER PREFILTER,HvCpxi_59,22 Homozygous,114671 +JOINT CALLER PREFILTER,HvCpxi_59,22 Het/Hom ratio,1.351 +JOINT CALLER PREFILTER,HvCpxi_59,X Heterozygous,176129 +JOINT CALLER PREFILTER,HvCpxi_59,X Homozygous,148095 +JOINT CALLER PREFILTER,HvCpxi_59,X Het/Hom ratio,1.189 +JOINT CALLER PREFILTER,HvCpxi_59,Y Heterozygous,146802 +JOINT CALLER PREFILTER,HvCpxi_59,Y Homozygous,178266 +JOINT CALLER PREFILTER,HvCpxi_59,Y Het/Hom ratio,0.823 +JOINT CALLER POSTFILTER,HvCpxi_59,1 Heterozygous,174747 +JOINT CALLER POSTFILTER,HvCpxi_59,1 Homozygous,109660 +JOINT CALLER POSTFILTER,HvCpxi_59,1 Het/Hom ratio,1.593 +JOINT CALLER POSTFILTER,HvCpxi_59,2 Heterozygous,150555 +JOINT CALLER POSTFILTER,HvCpxi_59,2 Homozygous,113419 +JOINT CALLER POSTFILTER,HvCpxi_59,2 Het/Hom ratio,1.327 +JOINT CALLER POSTFILTER,HvCpxi_59,3 Heterozygous,190054 +JOINT CALLER POSTFILTER,HvCpxi_59,3 Homozygous,140222 +JOINT CALLER POSTFILTER,HvCpxi_59,3 Het/Hom ratio,1.355 +JOINT CALLER POSTFILTER,HvCpxi_59,4 Heterozygous,194309 +JOINT CALLER POSTFILTER,HvCpxi_59,4 Homozygous,184440 +JOINT CALLER POSTFILTER,HvCpxi_59,4 Het/Hom ratio,1.053 +JOINT CALLER POSTFILTER,HvCpxi_59,5 Heterozygous,108313 +JOINT CALLER POSTFILTER,HvCpxi_59,5 Homozygous,100549 +JOINT CALLER POSTFILTER,HvCpxi_59,5 Het/Hom ratio,1.077 +JOINT CALLER POSTFILTER,HvCpxi_59,6 Heterozygous,197339 +JOINT CALLER POSTFILTER,HvCpxi_59,6 Homozygous,115848 +JOINT CALLER POSTFILTER,HvCpxi_59,6 Het/Hom ratio,1.703 +JOINT CALLER POSTFILTER,HvCpxi_59,7 Heterozygous,101534 +JOINT CALLER POSTFILTER,HvCpxi_59,7 Homozygous,199116 +JOINT CALLER POSTFILTER,HvCpxi_59,7 Het/Hom ratio,0.509 +JOINT CALLER POSTFILTER,HvCpxi_59,8 Heterozygous,138764 +JOINT CALLER POSTFILTER,HvCpxi_59,8 Homozygous,189730 +JOINT CALLER POSTFILTER,HvCpxi_59,8 Het/Hom ratio,0.731 +JOINT CALLER POSTFILTER,HvCpxi_59,9 Heterozygous,121819 +JOINT CALLER POSTFILTER,HvCpxi_59,9 Homozygous,134524 +JOINT CALLER POSTFILTER,HvCpxi_59,9 Het/Hom ratio,0.905 +JOINT CALLER POSTFILTER,HvCpxi_59,10 Heterozygous,125307 +JOINT CALLER POSTFILTER,HvCpxi_59,10 Homozygous,155054 +JOINT CALLER POSTFILTER,HvCpxi_59,10 Het/Hom ratio,0.808 +JOINT CALLER POSTFILTER,HvCpxi_59,11 Heterozygous,160795 +JOINT CALLER POSTFILTER,HvCpxi_59,11 Homozygous,193807 +JOINT CALLER POSTFILTER,HvCpxi_59,11 Het/Hom ratio,0.829 +JOINT CALLER POSTFILTER,HvCpxi_59,12 Heterozygous,123493 +JOINT CALLER POSTFILTER,HvCpxi_59,12 Homozygous,190508 +JOINT CALLER POSTFILTER,HvCpxi_59,12 Het/Hom ratio,0.648 +JOINT CALLER POSTFILTER,HvCpxi_59,13 Heterozygous,135517 +JOINT CALLER POSTFILTER,HvCpxi_59,13 Homozygous,141367 +JOINT CALLER POSTFILTER,HvCpxi_59,13 Het/Hom ratio,0.958 +JOINT CALLER POSTFILTER,HvCpxi_59,14 Heterozygous,193966 +JOINT CALLER POSTFILTER,HvCpxi_59,14 Homozygous,133392 +JOINT CALLER POSTFILTER,HvCpxi_59,14 Het/Hom ratio,1.454 +JOINT CALLER POSTFILTER,HvCpxi_59,15 Heterozygous,129902 +JOINT CALLER POSTFILTER,HvCpxi_59,15 Homozygous,156881 +JOINT CALLER POSTFILTER,HvCpxi_59,15 Het/Hom ratio,0.828 +JOINT CALLER POSTFILTER,HvCpxi_59,16 Heterozygous,114059 +JOINT CALLER POSTFILTER,HvCpxi_59,16 Homozygous,188219 +JOINT CALLER POSTFILTER,HvCpxi_59,16 Het/Hom ratio,0.605 +JOINT CALLER POSTFILTER,HvCpxi_59,17 Heterozygous,135064 +JOINT CALLER POSTFILTER,HvCpxi_59,17 Homozygous,185269 +JOINT CALLER POSTFILTER,HvCpxi_59,17 Het/Hom ratio,0.729 +JOINT CALLER POSTFILTER,HvCpxi_59,18 Heterozygous,196383 +JOINT CALLER POSTFILTER,HvCpxi_59,18 Homozygous,184366 +JOINT CALLER POSTFILTER,HvCpxi_59,18 Het/Hom ratio,1.065 +JOINT CALLER POSTFILTER,HvCpxi_59,19 Heterozygous,194494 +JOINT CALLER POSTFILTER,HvCpxi_59,19 Homozygous,163387 +JOINT CALLER POSTFILTER,HvCpxi_59,19 Het/Hom ratio,1.190 +JOINT CALLER POSTFILTER,HvCpxi_59,20 Heterozygous,140795 +JOINT CALLER POSTFILTER,HvCpxi_59,20 Homozygous,139083 +JOINT CALLER POSTFILTER,HvCpxi_59,20 Het/Hom ratio,1.012 +JOINT CALLER POSTFILTER,HvCpxi_59,21 Heterozygous,110786 +JOINT CALLER POSTFILTER,HvCpxi_59,21 Homozygous,192025 +JOINT CALLER POSTFILTER,HvCpxi_59,21 Het/Hom ratio,0.576 +JOINT CALLER POSTFILTER,HvCpxi_59,22 Heterozygous,184443 +JOINT CALLER POSTFILTER,HvCpxi_59,22 Homozygous,127152 +JOINT CALLER POSTFILTER,HvCpxi_59,22 Het/Hom ratio,1.450 +JOINT CALLER POSTFILTER,HvCpxi_59,X Heterozygous,143957 +JOINT CALLER POSTFILTER,HvCpxi_59,X Homozygous,197296 +JOINT CALLER POSTFILTER,HvCpxi_59,X Het/Hom ratio,0.729 +JOINT CALLER POSTFILTER,HvCpxi_59,Y Heterozygous,199147 +JOINT CALLER POSTFILTER,HvCpxi_59,Y Homozygous,136468 +JOINT CALLER POSTFILTER,HvCpxi_59,Y Het/Hom ratio,1.459 +JOINT CALLER PREFILTER,pxl_096962,1 Heterozygous,147467 +JOINT CALLER PREFILTER,pxl_096962,1 Homozygous,140667 +JOINT CALLER PREFILTER,pxl_096962,1 Het/Hom ratio,1.048 +JOINT CALLER PREFILTER,pxl_096962,2 Heterozygous,184357 +JOINT CALLER PREFILTER,pxl_096962,2 Homozygous,173767 +JOINT CALLER PREFILTER,pxl_096962,2 Het/Hom ratio,1.060 +JOINT CALLER PREFILTER,pxl_096962,3 Heterozygous,122596 +JOINT CALLER PREFILTER,pxl_096962,3 Homozygous,144027 +JOINT CALLER PREFILTER,pxl_096962,3 Het/Hom ratio,0.851 +JOINT CALLER PREFILTER,pxl_096962,4 Heterozygous,199270 +JOINT CALLER PREFILTER,pxl_096962,4 Homozygous,105532 +JOINT CALLER PREFILTER,pxl_096962,4 Het/Hom ratio,1.888 +JOINT CALLER PREFILTER,pxl_096962,5 Heterozygous,112187 +JOINT CALLER PREFILTER,pxl_096962,5 Homozygous,183496 +JOINT CALLER PREFILTER,pxl_096962,5 Het/Hom ratio,0.611 +JOINT CALLER PREFILTER,pxl_096962,6 Heterozygous,137714 +JOINT CALLER PREFILTER,pxl_096962,6 Homozygous,114685 +JOINT CALLER PREFILTER,pxl_096962,6 Het/Hom ratio,1.200 +JOINT CALLER PREFILTER,pxl_096962,7 Heterozygous,165634 +JOINT CALLER PREFILTER,pxl_096962,7 Homozygous,164462 +JOINT CALLER PREFILTER,pxl_096962,7 Het/Hom ratio,1.007 +JOINT CALLER PREFILTER,pxl_096962,8 Heterozygous,167959 +JOINT CALLER PREFILTER,pxl_096962,8 Homozygous,133758 +JOINT CALLER PREFILTER,pxl_096962,8 Het/Hom ratio,1.255 +JOINT CALLER PREFILTER,pxl_096962,9 Heterozygous,131308 +JOINT CALLER PREFILTER,pxl_096962,9 Homozygous,173275 +JOINT CALLER PREFILTER,pxl_096962,9 Het/Hom ratio,0.757 +JOINT CALLER PREFILTER,pxl_096962,10 Heterozygous,198546 +JOINT CALLER PREFILTER,pxl_096962,10 Homozygous,105021 +JOINT CALLER PREFILTER,pxl_096962,10 Het/Hom ratio,1.890 +JOINT CALLER PREFILTER,pxl_096962,11 Heterozygous,161346 +JOINT CALLER PREFILTER,pxl_096962,11 Homozygous,170775 +JOINT CALLER PREFILTER,pxl_096962,11 Het/Hom ratio,0.944 +JOINT CALLER PREFILTER,pxl_096962,12 Heterozygous,133267 +JOINT CALLER PREFILTER,pxl_096962,12 Homozygous,152820 +JOINT CALLER PREFILTER,pxl_096962,12 Het/Hom ratio,0.872 +JOINT CALLER PREFILTER,pxl_096962,13 Heterozygous,139877 +JOINT CALLER PREFILTER,pxl_096962,13 Homozygous,177650 +JOINT CALLER PREFILTER,pxl_096962,13 Het/Hom ratio,0.787 +JOINT CALLER PREFILTER,pxl_096962,14 Heterozygous,165099 +JOINT CALLER PREFILTER,pxl_096962,14 Homozygous,144637 +JOINT CALLER PREFILTER,pxl_096962,14 Het/Hom ratio,1.141 +JOINT CALLER PREFILTER,pxl_096962,15 Heterozygous,147728 +JOINT CALLER PREFILTER,pxl_096962,15 Homozygous,193595 +JOINT CALLER PREFILTER,pxl_096962,15 Het/Hom ratio,0.763 +JOINT CALLER PREFILTER,pxl_096962,16 Heterozygous,181113 +JOINT CALLER PREFILTER,pxl_096962,16 Homozygous,135974 +JOINT CALLER PREFILTER,pxl_096962,16 Het/Hom ratio,1.331 +JOINT CALLER PREFILTER,pxl_096962,17 Heterozygous,118286 +JOINT CALLER PREFILTER,pxl_096962,17 Homozygous,116439 +JOINT CALLER PREFILTER,pxl_096962,17 Het/Hom ratio,1.015 +JOINT CALLER PREFILTER,pxl_096962,18 Heterozygous,135282 +JOINT CALLER PREFILTER,pxl_096962,18 Homozygous,189729 +JOINT CALLER PREFILTER,pxl_096962,18 Het/Hom ratio,0.713 +JOINT CALLER PREFILTER,pxl_096962,19 Heterozygous,192959 +JOINT CALLER PREFILTER,pxl_096962,19 Homozygous,107672 +JOINT CALLER PREFILTER,pxl_096962,19 Het/Hom ratio,1.792 +JOINT CALLER PREFILTER,pxl_096962,20 Heterozygous,142113 +JOINT CALLER PREFILTER,pxl_096962,20 Homozygous,167159 +JOINT CALLER PREFILTER,pxl_096962,20 Het/Hom ratio,0.850 +JOINT CALLER PREFILTER,pxl_096962,21 Heterozygous,155390 +JOINT CALLER PREFILTER,pxl_096962,21 Homozygous,107869 +JOINT CALLER PREFILTER,pxl_096962,21 Het/Hom ratio,1.440 +JOINT CALLER PREFILTER,pxl_096962,22 Heterozygous,180295 +JOINT CALLER PREFILTER,pxl_096962,22 Homozygous,116601 +JOINT CALLER PREFILTER,pxl_096962,22 Het/Hom ratio,1.546 +JOINT CALLER PREFILTER,pxl_096962,X Heterozygous,118077 +JOINT CALLER PREFILTER,pxl_096962,X Homozygous,119293 +JOINT CALLER PREFILTER,pxl_096962,X Het/Hom ratio,0.989 +JOINT CALLER PREFILTER,pxl_096962,Y Heterozygous,193845 +JOINT CALLER PREFILTER,pxl_096962,Y Homozygous,156227 +JOINT CALLER PREFILTER,pxl_096962,Y Het/Hom ratio,1.240 +JOINT CALLER POSTFILTER,pxl_096962,1 Heterozygous,122353 +JOINT CALLER POSTFILTER,pxl_096962,1 Homozygous,132524 +JOINT CALLER POSTFILTER,pxl_096962,1 Het/Hom ratio,0.923 +JOINT CALLER POSTFILTER,pxl_096962,2 Heterozygous,177729 +JOINT CALLER POSTFILTER,pxl_096962,2 Homozygous,115019 +JOINT CALLER POSTFILTER,pxl_096962,2 Het/Hom ratio,1.545 +JOINT CALLER POSTFILTER,pxl_096962,3 Heterozygous,148879 +JOINT CALLER POSTFILTER,pxl_096962,3 Homozygous,123648 +JOINT CALLER POSTFILTER,pxl_096962,3 Het/Hom ratio,1.204 +JOINT CALLER POSTFILTER,pxl_096962,4 Heterozygous,179446 +JOINT CALLER POSTFILTER,pxl_096962,4 Homozygous,123007 +JOINT CALLER POSTFILTER,pxl_096962,4 Het/Hom ratio,1.458 +JOINT CALLER POSTFILTER,pxl_096962,5 Heterozygous,162671 +JOINT CALLER POSTFILTER,pxl_096962,5 Homozygous,177038 +JOINT CALLER POSTFILTER,pxl_096962,5 Het/Hom ratio,0.918 +JOINT CALLER POSTFILTER,pxl_096962,6 Heterozygous,103916 +JOINT CALLER POSTFILTER,pxl_096962,6 Homozygous,155532 +JOINT CALLER POSTFILTER,pxl_096962,6 Het/Hom ratio,0.668 +JOINT CALLER POSTFILTER,pxl_096962,7 Heterozygous,169783 +JOINT CALLER POSTFILTER,pxl_096962,7 Homozygous,120832 +JOINT CALLER POSTFILTER,pxl_096962,7 Het/Hom ratio,1.405 +JOINT CALLER POSTFILTER,pxl_096962,8 Heterozygous,132917 +JOINT CALLER POSTFILTER,pxl_096962,8 Homozygous,170085 +JOINT CALLER POSTFILTER,pxl_096962,8 Het/Hom ratio,0.781 +JOINT CALLER POSTFILTER,pxl_096962,9 Heterozygous,183603 +JOINT CALLER POSTFILTER,pxl_096962,9 Homozygous,105646 +JOINT CALLER POSTFILTER,pxl_096962,9 Het/Hom ratio,1.737 +JOINT CALLER POSTFILTER,pxl_096962,10 Heterozygous,122186 +JOINT CALLER POSTFILTER,pxl_096962,10 Homozygous,174341 +JOINT CALLER POSTFILTER,pxl_096962,10 Het/Hom ratio,0.700 +JOINT CALLER POSTFILTER,pxl_096962,11 Heterozygous,133137 +JOINT CALLER POSTFILTER,pxl_096962,11 Homozygous,179819 +JOINT CALLER POSTFILTER,pxl_096962,11 Het/Hom ratio,0.740 +JOINT CALLER POSTFILTER,pxl_096962,12 Heterozygous,194711 +JOINT CALLER POSTFILTER,pxl_096962,12 Homozygous,185998 +JOINT CALLER POSTFILTER,pxl_096962,12 Het/Hom ratio,1.046 +JOINT CALLER POSTFILTER,pxl_096962,13 Heterozygous,163060 +JOINT CALLER POSTFILTER,pxl_096962,13 Homozygous,187473 +JOINT CALLER POSTFILTER,pxl_096962,13 Het/Hom ratio,0.869 +JOINT CALLER POSTFILTER,pxl_096962,14 Heterozygous,145752 +JOINT CALLER POSTFILTER,pxl_096962,14 Homozygous,106438 +JOINT CALLER POSTFILTER,pxl_096962,14 Het/Hom ratio,1.369 +JOINT CALLER POSTFILTER,pxl_096962,15 Heterozygous,167911 +JOINT CALLER POSTFILTER,pxl_096962,15 Homozygous,154785 +JOINT CALLER POSTFILTER,pxl_096962,15 Het/Hom ratio,1.084 +JOINT CALLER POSTFILTER,pxl_096962,16 Heterozygous,125810 +JOINT CALLER POSTFILTER,pxl_096962,16 Homozygous,182401 +JOINT CALLER POSTFILTER,pxl_096962,16 Het/Hom ratio,0.689 +JOINT CALLER POSTFILTER,pxl_096962,17 Heterozygous,106271 +JOINT CALLER POSTFILTER,pxl_096962,17 Homozygous,176791 +JOINT CALLER POSTFILTER,pxl_096962,17 Het/Hom ratio,0.601 +JOINT CALLER POSTFILTER,pxl_096962,18 Heterozygous,148020 +JOINT CALLER POSTFILTER,pxl_096962,18 Homozygous,142441 +JOINT CALLER POSTFILTER,pxl_096962,18 Het/Hom ratio,1.039 +JOINT CALLER POSTFILTER,pxl_096962,19 Heterozygous,105777 +JOINT CALLER POSTFILTER,pxl_096962,19 Homozygous,108127 +JOINT CALLER POSTFILTER,pxl_096962,19 Het/Hom ratio,0.978 +JOINT CALLER POSTFILTER,pxl_096962,20 Heterozygous,100905 +JOINT CALLER POSTFILTER,pxl_096962,20 Homozygous,181574 +JOINT CALLER POSTFILTER,pxl_096962,20 Het/Hom ratio,0.555 +JOINT CALLER POSTFILTER,pxl_096962,21 Heterozygous,197710 +JOINT CALLER POSTFILTER,pxl_096962,21 Homozygous,155394 +JOINT CALLER POSTFILTER,pxl_096962,21 Het/Hom ratio,1.272 +JOINT CALLER POSTFILTER,pxl_096962,22 Heterozygous,182428 +JOINT CALLER POSTFILTER,pxl_096962,22 Homozygous,141707 +JOINT CALLER POSTFILTER,pxl_096962,22 Het/Hom ratio,1.287 +JOINT CALLER POSTFILTER,pxl_096962,X Heterozygous,113350 +JOINT CALLER POSTFILTER,pxl_096962,X Homozygous,146645 +JOINT CALLER POSTFILTER,pxl_096962,X Het/Hom ratio,0.772 +JOINT CALLER POSTFILTER,pxl_096962,Y Heterozygous,167525 +JOINT CALLER POSTFILTER,pxl_096962,Y Homozygous,143955 +JOINT CALLER POSTFILTER,pxl_096962,Y Het/Hom ratio,1.163 diff --git a/data/modules/dragen/PR_1911/FYC_765_dragen.ploidy_estimation_metrics.csv b/data/modules/dragen/PR_1911/FYC_765_dragen.ploidy_estimation_metrics.csv new file mode 100644 index 00000000..e32edccf --- /dev/null +++ b/data/modules/dragen/PR_1911/FYC_765_dragen.ploidy_estimation_metrics.csv @@ -0,0 +1,28 @@ +PLOIDY ESTIMATION,,Autosomal median coverage,41.68 +PLOIDY ESTIMATION,,X median coverage,82.58 +PLOIDY ESTIMATION,,Y median coverage,8.78 +PLOIDY ESTIMATION,,1 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,2 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,3 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,4 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,5 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,6 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,7 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,8 median / Autosomal median,0.98 +PLOIDY ESTIMATION,,9 median / Autosomal median,0.97 +PLOIDY ESTIMATION,,10 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,11 median / Autosomal median,0.98 +PLOIDY ESTIMATION,,12 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,13 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,14 median / Autosomal median,0.98 +PLOIDY ESTIMATION,,15 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,16 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,17 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,18 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,19 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,20 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,21 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,22 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,X median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Y median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Ploidy estimation,XY diff --git a/data/modules/dragen/PR_1911/GFW_16_dragen.ploidy_estimation_metrics.csv b/data/modules/dragen/PR_1911/GFW_16_dragen.ploidy_estimation_metrics.csv new file mode 100644 index 00000000..5d21165b --- /dev/null +++ b/data/modules/dragen/PR_1911/GFW_16_dragen.ploidy_estimation_metrics.csv @@ -0,0 +1,28 @@ +PLOIDY ESTIMATION,,Autosomal median coverage,15.01 +PLOIDY ESTIMATION,,X median coverage,5.4 +PLOIDY ESTIMATION,,Y median coverage,47.14 +PLOIDY ESTIMATION,,1 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,2 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,3 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,4 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,5 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,6 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,7 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,8 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,9 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,10 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,11 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,12 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,13 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,14 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,15 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,16 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,17 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,18 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,19 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,20 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,21 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,22 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,X median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Y median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Ploidy estimation,X0 diff --git a/data/modules/dragen/PR_1911/README.md b/data/modules/dragen/PR_1911/README.md new file mode 100644 index 00000000..1551f9a8 --- /dev/null +++ b/data/modules/dragen/PR_1911/README.md @@ -0,0 +1 @@ +Artificial \.ploidy_estimation_metrics.csv files. diff --git a/data/modules/dragen/PR_1911/SAMPLE_1.ploidy_estimation_metrics.csv b/data/modules/dragen/PR_1911/SAMPLE_1.ploidy_estimation_metrics.csv new file mode 100644 index 00000000..8e96afe8 --- /dev/null +++ b/data/modules/dragen/PR_1911/SAMPLE_1.ploidy_estimation_metrics.csv @@ -0,0 +1,28 @@ +PLOIDY ESTIMATION,,Autosomal median coverage,71.26 +PLOIDY ESTIMATION,,X median coverage,65.88 +PLOIDY ESTIMATION,,Y median coverage,0.00 +PLOIDY ESTIMATION,,1 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,2 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,3 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,4 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,5 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,6 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,7 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,8 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,9 median / Autosomal median,0.98 +PLOIDY ESTIMATION,,10 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,11 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,12 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,13 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,14 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,15 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,16 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,17 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,18 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,19 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,20 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,21 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,22 median / Autosomal median,0.98 +PLOIDY ESTIMATION,,X median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Y median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Ploidy estimation,XY diff --git a/data/modules/dragen/PR_1911/SAMPLE_2.ploidy_estimation_metrics.csv b/data/modules/dragen/PR_1911/SAMPLE_2.ploidy_estimation_metrics.csv new file mode 100644 index 00000000..8486c724 --- /dev/null +++ b/data/modules/dragen/PR_1911/SAMPLE_2.ploidy_estimation_metrics.csv @@ -0,0 +1,28 @@ +PLOIDY ESTIMATION,,Autosomal median coverage,68.04 +PLOIDY ESTIMATION,,X median coverage,21.08 +PLOIDY ESTIMATION,,Y median coverage,24.39 +PLOIDY ESTIMATION,,1 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,2 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,3 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,4 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,5 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,6 median / Autosomal median,0.98 +PLOIDY ESTIMATION,,7 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,8 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,9 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,10 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,11 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,12 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,13 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,14 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,15 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,16 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,17 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,18 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,19 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,20 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,21 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,22 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,X median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Y median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Ploidy estimation,XX diff --git a/data/modules/dragen/PR_1911/SAMPLE_3.ploidy_estimation_metrics.csv b/data/modules/dragen/PR_1911/SAMPLE_3.ploidy_estimation_metrics.csv new file mode 100644 index 00000000..625bc3a7 --- /dev/null +++ b/data/modules/dragen/PR_1911/SAMPLE_3.ploidy_estimation_metrics.csv @@ -0,0 +1,28 @@ +PLOIDY ESTIMATION,,Autosomal median coverage,33.11 +PLOIDY ESTIMATION,,X median coverage,32.61 +PLOIDY ESTIMATION,,Y median coverage,25.27 +PLOIDY ESTIMATION,,1 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,2 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,3 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,4 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,5 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,6 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,7 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,8 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,9 median / Autosomal median,1.02 +PLOIDY ESTIMATION,,10 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,11 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,12 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,13 median / Autosomal median,0.89 +PLOIDY ESTIMATION,,14 median / Autosomal median,0.95 +PLOIDY ESTIMATION,,15 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,16 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,17 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,18 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,19 median / Autosomal median,1.03 +PLOIDY ESTIMATION,,20 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,21 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,22 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,X median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Y median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Ploidy estimation,XY diff --git a/data/modules/dragen/PR_1911/SAMPLE_4.ploidy_estimation_metrics.csv b/data/modules/dragen/PR_1911/SAMPLE_4.ploidy_estimation_metrics.csv new file mode 100644 index 00000000..a2e440c2 --- /dev/null +++ b/data/modules/dragen/PR_1911/SAMPLE_4.ploidy_estimation_metrics.csv @@ -0,0 +1,28 @@ +PLOIDY ESTIMATION,,Autosomal median coverage,81.14 +PLOIDY ESTIMATION,,X median coverage,30.36 +PLOIDY ESTIMATION,,Y median coverage,17.61 +PLOIDY ESTIMATION,,1 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,2 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,3 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,4 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,5 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,6 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,7 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,8 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,9 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,10 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,11 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,12 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,13 median / Autosomal median,1.05 +PLOIDY ESTIMATION,,14 median / Autosomal median,1.03 +PLOIDY ESTIMATION,,15 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,16 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,17 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,18 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,19 median / Autosomal median,0.97 +PLOIDY ESTIMATION,,20 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,21 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,22 median / Autosomal median,0.97 +PLOIDY ESTIMATION,,X median / Autosomal median,0.99 +PLOIDY ESTIMATION,,Y median / Autosomal median,0 +PLOIDY ESTIMATION,,Ploidy estimation,XY diff --git a/data/modules/dragen/PR_1911/SAMPLE_5.ploidy_estimation_metrics.csv b/data/modules/dragen/PR_1911/SAMPLE_5.ploidy_estimation_metrics.csv new file mode 100644 index 00000000..9272090d --- /dev/null +++ b/data/modules/dragen/PR_1911/SAMPLE_5.ploidy_estimation_metrics.csv @@ -0,0 +1,28 @@ +PLOIDY ESTIMATION,,Autosomal median coverage,29.23 +PLOIDY ESTIMATION,,X median coverage,68.1 +PLOIDY ESTIMATION,,Y median coverage,0.00 +PLOIDY ESTIMATION,,1 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,2 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,3 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,4 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,5 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,6 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,7 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,8 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,9 median / Autosomal median,0.97 +PLOIDY ESTIMATION,,10 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,11 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,12 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,13 median / Autosomal median,0.93 +PLOIDY ESTIMATION,,14 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,15 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,16 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,17 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,18 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,19 median / Autosomal median,0.94 +PLOIDY ESTIMATION,,20 median / Autosomal median,0.97 +PLOIDY ESTIMATION,,21 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,22 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,X median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Y median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Ploidy estimation,XX diff --git a/data/modules/dragen/PR_1911/SA_6_dragen.ploidy_estimation_metrics.csv b/data/modules/dragen/PR_1911/SA_6_dragen.ploidy_estimation_metrics.csv new file mode 100644 index 00000000..fa9d4490 --- /dev/null +++ b/data/modules/dragen/PR_1911/SA_6_dragen.ploidy_estimation_metrics.csv @@ -0,0 +1,28 @@ +PLOIDY ESTIMATION,,Autosomal median coverage,2.17 +PLOIDY ESTIMATION,,X median coverage,81.69 +PLOIDY ESTIMATION,,Y median coverage,62.14 +PLOIDY ESTIMATION,,1 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,2 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,3 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,4 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,5 median / Autosomal median,0.98 +PLOIDY ESTIMATION,,6 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,7 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,8 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,9 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,10 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,11 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,12 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,13 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,14 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,15 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,16 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,17 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,18 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,19 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,20 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,21 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,22 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,X median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Y median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Ploidy estimation,XY diff --git a/data/modules/dragen/PR_1911/SD_1526_dragen.ploidy_estimation_metrics.csv b/data/modules/dragen/PR_1911/SD_1526_dragen.ploidy_estimation_metrics.csv new file mode 100644 index 00000000..860dd910 --- /dev/null +++ b/data/modules/dragen/PR_1911/SD_1526_dragen.ploidy_estimation_metrics.csv @@ -0,0 +1,28 @@ +PLOIDY ESTIMATION,,Autosomal median coverage,61.45 +PLOIDY ESTIMATION,,X median coverage,13.88 +PLOIDY ESTIMATION,,Y median coverage,15.8 +PLOIDY ESTIMATION,,1 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,2 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,3 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,4 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,5 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,6 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,7 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,8 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,9 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,10 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,11 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,12 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,13 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,14 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,15 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,16 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,17 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,18 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,19 median / Autosomal median,0.98 +PLOIDY ESTIMATION,,20 median / Autosomal median,0.98 +PLOIDY ESTIMATION,,21 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,22 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,X median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Y median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Ploidy estimation,XY diff --git a/data/modules/dragen/PR_1911/T_2_dragen.ploidy_estimation_metrics.csv b/data/modules/dragen/PR_1911/T_2_dragen.ploidy_estimation_metrics.csv new file mode 100644 index 00000000..6abadf97 --- /dev/null +++ b/data/modules/dragen/PR_1911/T_2_dragen.ploidy_estimation_metrics.csv @@ -0,0 +1,28 @@ +PLOIDY ESTIMATION,,Autosomal median coverage,85.01 +PLOIDY ESTIMATION,,X median coverage,31.18 +PLOIDY ESTIMATION,,Y median coverage,88.85 +PLOIDY ESTIMATION,,1 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,2 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,3 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,4 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,5 median / Autosomal median,0.98 +PLOIDY ESTIMATION,,6 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,7 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,8 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,9 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,10 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,11 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,12 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,13 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,14 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,15 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,16 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,17 median / Autosomal median,0.99 +PLOIDY ESTIMATION,,18 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,19 median / Autosomal median,1.01 +PLOIDY ESTIMATION,,20 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,21 median / Autosomal median,1.00 +PLOIDY ESTIMATION,,22 median / Autosomal median,1.02 +PLOIDY ESTIMATION,,X median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Y median / Autosomal median,0.5 +PLOIDY ESTIMATION,,Ploidy estimation,XY