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krokickikrokicki
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fixed tests
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-165
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2 files changed

+122
-165
lines changed

‎neuronbridge/model.py‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -143,8 +143,8 @@ class PPPMatch(Match, extra=Extra.forbid):
143143
A PPPMatch is a match generated by the PPPM algorithm between an EMImage and a LMImage.
144144
"""
145145
type: Literal['PPPMatch'] = 'PPPMatch'
146-
pppRank: float = Field(title="PPPM rank", description="Fractional rank reported by the PPPM algorithm. It's generally better to use the index of the image in the results.")
147-
pppScore: int = Field(title="PPPM score", description="Match score reported by the PPPM algorithm.")
146+
pppmRank: float = Field(title="PPPM rank", description="Fractional rank reported by the PPPM algorithm. It's generally better to use the index of the image in the results.")
147+
pppmScore: int = Field(title="PPPM score", description="Match score reported by the PPPM algorithm.")
148148

149149

150150
class CDSMatch(Match, extra=Extra.forbid):

‎tests/test_model.py‎

Lines changed: 120 additions & 163 deletions
Original file line numberDiff line numberDiff line change
@@ -7,28 +7,26 @@
77
by_body = json.loads(
88
"""
99
{
10-
"results": [
11-
{
12-
"id": "2945073143148142603",
13-
"type": "EMImage",
14-
"libraryName": "FlyEM_Hemibrain_v1.2.1",
15-
"publishedName": "1734696429",
16-
"alignmentSpace": "JRC2018_Unisex_20x_HR",
17-
"anatomicalArea": "Brain",
18-
"gender": "f",
19-
"store": "fl:hemibrain:v1.2.1",
20-
"files": {
21-
"CDM": "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/1734696429-JRC2018_Unisex_20x_HR-CDM.png",
22-
"CDMThumbnail": "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/1734696429-JRC2018_Unisex_20x_HR-CDM.jpg",
23-
"AlignedBodySWC": "FlyEM_Hemibrain_v1.2.1/1734696429.swc",
24-
"AlignedBodyOBJ": "FlyEM_Hemibrain_v1.2.1/1734696429.obj",
25-
"CDSResults": "2945073143148142603.json",
26-
"PPPMResults": "1734696429.json"
27-
},
28-
"neuronType": "ORN_DA1",
29-
"neuronInstance": "ORN_DA1_L"
30-
}
31-
]
10+
"results" : [ {
11+
"libraryName" : "FlyEM_Hemibrain_v1.2.1",
12+
"alignmentSpace" : "JRC2018_Unisex_20x_HR",
13+
"anatomicalArea" : "Brain",
14+
"gender" : "f",
15+
"neuronType" : "ORN_DA1",
16+
"neuronInstance" : "ORN_DA1_L",
17+
"id" : "2945073143148142603",
18+
"publishedName" : "hemibrain:v1.2.1:1734696429",
19+
"files" : {
20+
"AlignedBodyOBJ" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/OBJ/1734696429.obj",
21+
"CDM" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/1734696429-JRC2018_Unisex_20x_HR-CDM.png",
22+
"store" : "fl:open_data:brain",
23+
"CDMThumbnail" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/1734696429-JRC2018_Unisex_20x_HR-CDM.jpg",
24+
"CDSResults" : "2945073143148142603.json",
25+
"AlignedBodySWC" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/SWC/1734696429.swc",
26+
"PPPMResults" : "2941779068174991906.json"
27+
},
28+
"type" : "EMImage"
29+
} ]
3230
}
3331
""")
3432

@@ -39,146 +37,90 @@ def test_EMImageLookup():
3937
assert isinstance(img, EMImage)
4038
assert img.id == "2945073143148142603"
4139
assert img.libraryName == "FlyEM_Hemibrain_v1.2.1"
42-
assert img.publishedName == "1734696429"
40+
assert img.publishedName == "hemibrain:v1.2.1:1734696429"
4341
assert img.alignmentSpace == "JRC2018_Unisex_20x_HR"
4442
assert img.gender == Gender.female
4543
assert img.files.CDM == "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/1734696429-JRC2018_Unisex_20x_HR-CDM.png"
4644
assert img.files.CDMThumbnail == "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/1734696429-JRC2018_Unisex_20x_HR-CDM.jpg"
47-
assert img.files.AlignedBodySWC == "FlyEM_Hemibrain_v1.2.1/1734696429.swc"
48-
assert img.files.AlignedBodyOBJ == "FlyEM_Hemibrain_v1.2.1/1734696429.obj"
45+
assert img.files.AlignedBodySWC == "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/SWC/1734696429.swc"
46+
assert img.files.AlignedBodyOBJ == "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/OBJ/1734696429.obj"
4947
assert img.files.CDSResults == "2945073143148142603.json"
50-
assert img.files.PPPMResults == "1734696429.json"
48+
assert img.files.PPPMResults == "2941779068174991906.json"
5149

5250
assert img.neuronType == "ORN_DA1"
5351
assert img.neuronInstance == "ORN_DA1_L"
5452

5553
ppp_results = json.loads(
5654
"""
5755
{
58-
"inputImage": {
59-
"id": "2945073144457764875",
60-
"type": "EMImage",
61-
"libraryName": "FlyEM_Hemibrain_v1.2.1",
62-
"publishedName": "2384750665",
63-
"anatomicalArea": "Brain",
64-
"alignmentSpace": "JRC2018_Unisex_20x_HR",
65-
"gender": "f",
66-
"store": "fl:hemibrain:v1.2.1",
67-
"files": {
68-
"CDM": "$img/JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/2384750665-JRC2018_Unisex_20x_HR-CDM.png",
69-
"CDMThumbnail": "$thm/JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/2384750665-JRC2018_Unisex_20x_HR-CDM.jpg",
70-
"AlignedBodySWC": "$swc/FlyEM_Hemibrain_v1.2.1/2384750665.swc"
71-
},
72-
"neuronType": null,
73-
"neuronInstance": null
74-
},
75-
"results": [
76-
{
77-
"type": "PPPMatch",
78-
"image": {
79-
"id": "2588090337243168866",
80-
"type": "LMImage",
81-
"libraryName": "FlyLight_Gen1_MCFO",
82-
"publishedName": "R20H11",
83-
"alignmentSpace": "JRC2018_Unisex_20x_HR",
84-
"gender": "f",
85-
"store": "fl:hemibrain:v1.2.1",
86-
"files": {
87-
"VisuallyLosslessStack": "https://s3.amazonaws.com/janelia-flylight-imagery/Gen1+MCFO/R20H11/R20H11-20180918_62_A5-f-40x-central-GAL4-JRC2018_Unisex_20x_HR-aligned_stack.h5j"
88-
},
89-
"slideCode": "20180918_62_A5",
90-
"objective": "40x",
91-
"anatomicalArea": "Brain",
92-
"mountingProtocol": "DPX PBS Mounting"
93-
},
94-
"files": {
95-
"CDM": "23/2384750665/2384750665-R20H11-20180918_62_A5-40x-JRC2018_Unisex_20x_HR-ch.png",
96-
"CDMSkel": "23/2384750665/2384750665-R20H11-20180918_62_A5-40x-JRC2018_Unisex_20x_HR-ch_skel.png",
97-
"SignalMip": "23/2384750665/2384750665-R20H11-20180918_62_A5-40x-JRC2018_Unisex_20x_HR-raw.png",
98-
"SignalMipMasked": "23/2384750665/2384750665-R20H11-20180918_62_A5-40x-JRC2018_Unisex_20x_HR-masked_raw.png",
99-
"SignalMipMaskedSkel": "23/2384750665/2384750665-R20H11-20180918_62_A5-40x-JRC2018_Unisex_20x_HR-skel.png"
100-
},
101-
"mirrored": true,
102-
"pppRank": 0.0,
103-
"pppScore": 144
104-
}
105-
]}
106-
"""
107-
)
108-
109-
def test_PPPMatches():
110-
matches = PrecomputedMatches(**ppp_results)
111-
img = matches.inputImage
112-
assert isinstance(img, EMImage)
113-
assert img.id == "2945073144457764875"
114-
assert len(matches.results) == 1
115-
match = matches.results[0]
116-
assert isinstance(match, PPPMatch)
117-
assert isinstance(match.image, LMImage)
118-
assert match.image.id == "2588090337243168866"
119-
assert match.image.gender == Gender.female
120-
assert match.mirrored == True
121-
assert match.files.CDM == "23/2384750665/2384750665-R20H11-20180918_62_A5-40x-JRC2018_Unisex_20x_HR-ch.png"
122-
123-
new_results = json.loads(
124-
"""{
12556
"inputImage" : {
126-
"id" : "2945073147357655051",
127-
"type": "EMImage",
12857
"libraryName" : "FlyEM_Hemibrain_v1.2.1",
129-
"publishedName" : "1253394541",
13058
"alignmentSpace" : "JRC2018_Unisex_20x_HR",
131-
"anatomicalArea": "Brain",
132-
"gender": "f",
133-
"neuronType" : "MC62",
134-
"neuronInstance" : "MC62(LWF5)_R",
135-
"store": "fl:hemibrain:v1.2.1",
59+
"anatomicalArea" : "Brain",
60+
"gender" : "f",
61+
"neuronType" : "ORN_DA1",
62+
"neuronInstance" : "ORN_DA1_L",
63+
"id" : "2945073143148142603",
64+
"publishedName" : "hemibrain:v1.2.1:1734696429",
13665
"files" : {
137-
"CDMThumbnail" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/1253394541-JRC2018_Unisex_20x_HR-CDM.jpg",
138-
"CDM" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/1253394541-JRC2018_Unisex_20x_HR-CDM.png",
139-
"AlignedBodySWC" : "FlyEM_Hemibrain_v1.2.1/1253394541.swc"
140-
}
66+
"CDM" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/1734696429-JRC2018_Unisex_20x_HR-CDM.png",
67+
"AlignedBodySWC" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/SWC/1734696429.swc",
68+
"store" : "fl:open_data:brain",
69+
"AlignedBodyOBJ" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/OBJ/1734696429.obj",
70+
"CDSResults" : "2945073143148142603.json",
71+
"CDMThumbnail" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/1734696429-JRC2018_Unisex_20x_HR-CDM.jpg",
72+
"PPPMResults" : "2941779068174991906.json"
73+
},
74+
"type" : "EMImage"
14175
},
14276
"results" : [ {
143-
"type": "CDSMatch",
14477
"mirrored" : false,
145-
"normalizedScore" : 34433.96,
146-
"matchingPixels" : 73,
14778
"image" : {
148-
"id" : "2775341446398476299",
149-
"type": "LMImage",
15079
"libraryName" : "FlyLight Gen1 MCFO",
151-
"publishedName" : "VT040712",
15280
"alignmentSpace" : "JRC2018_Unisex_20x_HR",
15381
"anatomicalArea" : "Brain",
15482
"gender" : "m",
155-
"slideCode" : "20200221_64_H4",
83+
"slideCode" : "20200124_63_B4",
15684
"objective" : "40x",
15785
"mountingProtocol" : "DPX PBS Mounting",
158-
"channel" : 2,
159-
"store": "fl:hemibrain:v1.2.1",
86+
"publishedName" : "VT023750",
16087
"files" : {
161-
"CDMThumbnail" : "JRC2018_Unisex_20x_HR/FlyLight_Gen1_MCFO/VT040712-20200221_64_H4-GAL4-m-40x-brain-JRC2018_Unisex_20x_HR-CDM_2.jpg",
162-
"CDM" : "JRC2018_Unisex_20x_HR/FlyLight_Gen1_MCFO/VT040712-20200221_64_H4-GAL4-m-40x-brain-JRC2018_Unisex_20x_HR-CDM_2.png",
163-
"VisuallyLosslessStack" : "Gen1+MCFO/VT040712/VT040712-20200221_64_H4-m-40x-central-GAL4-JRC2018_Unisex_20x_HR-aligned_stack.h5j",
164-
"Gal4Expression" : "Gen1/CDM/VT040712/VT040712-sample_003501-f-20x-brain-JRC2018_Unisex_20x_HR-CDM_1.png"
165-
}
88+
"VisuallyLosslessStack" : "Gen1+MCFO/VT023750/VT023750-20200124_63_B4-m-40x-central-GAL4-JRC2018_Unisex_20x_HR-aligned_stack.h5j",
89+
"store" : "fl:open_data:brain"
90+
},
91+
"id" : "2765069201377853538",
92+
"type" : "LMImage"
16693
},
16794
"files" : {
168-
"CDMMatch" : "VT040712-20200221_64_H4-GAL4-m-40x-brain-JRC2018_Unisex_20x_HR-CDM_2-04.png",
169-
"CDMInput" : "1253394541-JRC2018_Unisex_20x_HR-CDM.png"
170-
}
171-
}]
172-
}
95+
"SignalMip" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/17/1734696429/1734696429-VT023750-20200124_63_B4-40x-JRC2018_Unisex_20x_HR-raw.png",
96+
"store" : "fl:open_data:brain",
97+
"CDMBest" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/17/1734696429/1734696429-VT023750-20200124_63_B4-40x-JRC2018_Unisex_20x_HR-ch.png",
98+
"CDMBestThumbnail" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/17/1734696429/1734696429-VT023750-20200124_63_B4-40x-JRC2018_Unisex_20x_HR-ch.jpg",
99+
"SignalMipMaskedSkel" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/17/1734696429/1734696429-VT023750-20200124_63_B4-40x-JRC2018_Unisex_20x_HR-skel.png",
100+
"SignalMipMasked" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/17/1734696429/1734696429-VT023750-20200124_63_B4-40x-JRC2018_Unisex_20x_HR-masked_raw.png",
101+
"CDMSkel" : "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/17/1734696429/1734696429-VT023750-20200124_63_B4-40x-JRC2018_Unisex_20x_HR-ch_skel.png"
102+
},
103+
"pppmRank" : 0.0,
104+
"pppmScore" : 129,
105+
"type" : "PPPMatch"
106+
}
107+
]}
173108
"""
174109
)
175110

176-
def test_NewMatches():
177-
matches = PrecomputedMatches(**new_results)
178-
assert isinstance(matches.inputImage, EMImage)
111+
def test_PPPMatches():
112+
matches = PrecomputedMatches(**ppp_results)
113+
img = matches.inputImage
114+
assert isinstance(img, EMImage)
115+
assert img.id == "2945073143148142603"
116+
assert len(matches.results) == 1
179117
match = matches.results[0]
180-
assert isinstance(match, CDSMatch)
118+
assert isinstance(match, PPPMatch)
181119
assert isinstance(match.image, LMImage)
120+
assert match.image.id == "2765069201377853538"
121+
assert match.image.gender == Gender.male
122+
assert match.mirrored == False
123+
assert match.files.CDMBest == "JRC2018_Unisex_20x_HR/FlyEM_Hemibrain_v1.2.1/17/1734696429/1734696429-VT023750-20200124_63_B4-40x-JRC2018_Unisex_20x_HR-ch.png"
182124

183125

184126
config = json.loads(
@@ -195,8 +137,8 @@ def test_NewMatches():
195137
}
196138
},
197139
"stores": {
198-
"fl:hemibrain:v1.2.1": {
199-
"label": "FlyLight vs Hemibrain",
140+
"fl:open_data:brain": {
141+
"label": "FlyLight Brain Open Data Store",
200142
"anatomicalArea": "Brain",
201143
"prefixes": {
202144
"CDM": "https://s3.amazonaws.com/janelia-flylight-color-depth/",
@@ -210,55 +152,71 @@ def test_NewMatches():
210152
"SignalMipMasked": "https://s3.amazonaws.com/janelia-ppp-match-prod/",
211153
"SignalMipMaskedSkel": "https://s3.amazonaws.com/janelia-ppp-match-prod/",
212154
"SignalMipExpression": "https://s3.amazonaws.com/janelia-ppp-match-prod/",
213-
"AlignedBodySWC": "https://s3.amazonaws.com/janelia-flylight-color-depth/SWC/",
214-
"AlignedBodyOBJ": "https://s3.amazonaws.com/janelia-flylight-color-depth/OBJ/",
215-
"CDSResults": "https://s3.amazonaws.com/janelia-neuronbridge-data-prod/v3.0.0-alpha/metadata/cdsresults/",
216-
"PPPMResults": "https://s3.amazonaws.com/janelia-neuronbridge-data-prod/v3.0.0-alpha/metadata/pppresults/",
217-
"VisuallyLosslessStack": "https://s3.amazonaws.com/janelia-flylight-imagery/"
155+
"AlignedBodySWC": "https://s3.amazonaws.com/janelia-flylight-color-depth/",
156+
"AlignedBodyOBJ": "https://s3.amazonaws.com/janelia-flylight-color-depth/",
157+
"CDSResults": "https://s3.amazonaws.com/janelia-neuronbridge-data-devpre/v3.0.0/metadata/cdsresults/",
158+
"PPPMResults": "https://s3.amazonaws.com/janelia-neuronbridge-data-devpre/v3.0.0/metadata/pppresults/",
159+
"VisuallyLosslessStack": "https://s3.amazonaws.com/janelia-flylight-imagery/",
160+
"Gal4Expression": "https://s3.amazonaws.com/janelia-flylight-imagery/"
218161
},
219162
"customSearch": {
220-
"alignmentSpace": "JRC2018_Unisex_20x_HR",
221163
"searchFolder": "searchable_neurons",
222164
"lmLibraries": [
223-
"FlyLight_Split-GAL4_Drivers",
224-
"FlyLight_Gen1_MCFO",
225-
"FlyLight_Annotator_Gen1_MCFO"
165+
{
166+
"name": "FlyLight_Split-GAL4_Drivers"
167+
},
168+
{
169+
"name": "FlyLight_Gen1_MCFO"
170+
},
171+
{
172+
"name": "FlyLight_Annotator_Gen1_MCFO"
173+
}
226174
],
227175
"emLibraries": [
228-
"FlyEM_Hemibrain_v1.2.1"
176+
{
177+
"name": "FlyEM_Hemibrain_v1.2.1",
178+
"publishedNamePrefix": "hemibrain:v1.2.1"
179+
}
229180
]
230181
}
231182
},
232-
"fl:vnc:latest": {
233-
"label": "FlyLight vs VNC",
183+
"fl:pre_release:vnc": {
184+
"label": "FlyLight VNC Pre-Release Store",
234185
"anatomicalArea": "VNC",
235186
"prefixes": {
236-
"CDM": "https://s3.amazonaws.com/janelia-flylight-color-depth/",
237-
"CDMThumbnail": "https://s3.amazonaws.com/janelia-flylight-color-depth-thumbnails/",
238-
"CDMInput": "https://s3.amazonaws.com/janelia-flylight-color-depth/",
239-
"CDMMatch": "https://s3.amazonaws.com/janelia-flylight-color-depth/",
240-
"CDMBest": "https://s3.amazonaws.com/janelia-ppp-match-prod/",
241-
"CDMBestThumbnail": "https://s3.amazonaws.com/janelia-ppp-match-prod/",
242-
"CDMSkel": "https://s3.amazonaws.com/janelia-ppp-match-prod/",
243-
"SignalMip": "https://s3.amazonaws.com/janelia-ppp-match-prod/",
244-
"SignalMipMasked": "https://s3.amazonaws.com/janelia-ppp-match-prod/",
245-
"SignalMipMaskedSkel": "https://s3.amazonaws.com/janelia-ppp-match-prod/",
246-
"SignalMipExpression": "https://s3.amazonaws.com/janelia-ppp-match-prod/",
247-
"AlignedBodySWC": "https://s3.amazonaws.com/janelia-flylight-color-depth/SWC/",
248-
"AlignedBodyOBJ": "https://s3.amazonaws.com/janelia-flylight-color-depth/OBJ/",
249-
"CDSResults": "https://s3.amazonaws.com/janelia-neuronbridge-data-prod/v3.0.0-alpha/metadata/cdsresults/",
250-
"PPPMResults": "https://s3.amazonaws.com/janelia-neuronbridge-data-prod/v3.0.0-alpha/metadata/pppresults/",
251-
"VisuallyLosslessStack": "https://s3.amazonaws.com/janelia-flylight-imagery/"
187+
"CDM": "https://s3.amazonaws.com/janelia-flylight-color-depth-devpre/",
188+
"CDMThumbnail": "https://s3.amazonaws.com/janelia-flylight-color-depth-thumbnails-devpre/",
189+
"CDMInput": "https://s3.amazonaws.com/janelia-flylight-color-depth-devpre/",
190+
"CDMMatch": "https://s3.amazonaws.com/janelia-flylight-color-depth-devpre/",
191+
"CDMBest": "https://s3.amazonaws.com/janelia-ppp-match-devpre/",
192+
"CDMBestThumbnail": "https://s3.amazonaws.com/janelia-ppp-match-devpre/",
193+
"CDMSkel": "https://s3.amazonaws.com/janelia-ppp-match-devpre/",
194+
"SignalMip": "https://s3.amazonaws.com/janelia-ppp-match-devpre/",
195+
"SignalMipMasked": "https://s3.amazonaws.com/janelia-ppp-match-devpre/",
196+
"SignalMipMaskedSkel": "https://s3.amazonaws.com/janelia-ppp-match-devpre/",
197+
"SignalMipExpression": "https://s3.amazonaws.com/janelia-ppp-match-devpre/",
198+
"AlignedBodySWC": "https://s3.amazonaws.com/janelia-flylight-color-depth-devpre/",
199+
"AlignedBodyOBJ": "https://s3.amazonaws.com/janelia-flylight-color-depth-devpre/",
200+
"CDSResults": "https://s3.amazonaws.com/janelia-neuronbridge-data-devpre/v3.0.0/metadata/cdsresults/",
201+
"PPPMResults": "https://s3.amazonaws.com/janelia-neuronbridge-data-devpre/v3.0.0/metadata/pppresults/",
202+
"VisuallyLosslessStack": "https://s3.amazonaws.com/janelia-flylight-imagery/",
203+
"Gal4Expression": "https://s3.amazonaws.com/janelia-flylight-imagery/"
252204
},
253205
"customSearch": {
254-
"alignmentSpace": "JRC2018_VNC_Unisex_40x_DS",
255206
"searchFolder": "searchable_neurons",
256207
"lmLibraries": [
257-
"FlyLight_Split-GAL4_Drivers",
258-
"FlyLight_Gen1_MCFO"
208+
{
209+
"name": "FlyLight_Split-GAL4_Drivers"
210+
},
211+
{
212+
"name": "FlyLight_Gen1_MCFO"
213+
}
259214
],
260215
"emLibraries": [
261-
"FlyEM_VNC_v0.6"
216+
{
217+
"name": "FlyEM_VNC_v0.6",
218+
"publishedNamePrefix": "vnc:v0.6"
219+
}
262220
]
263221
}
264222
}
@@ -278,4 +236,3 @@ def test_DataConfig():
278236
for dataSetName in data_config.stores:
279237
store = data_config.stores[dataSetName]
280238
assert store.anatomicalArea in data_config.anatomicalAreas
281-
assert store.customSearch.alignmentSpace in alignmentSpaces

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