Merge branch 'master' into mui-styles-migration

Author: jtklein

.prettierrc

@@ -13,5 +13,5 @@
   "useTabs": false,
   "semi": true,
   "bracketSpacing": true,
-  "jsxBracketSameLine": false
+  "bracketSameLine": false
 }

package.json

@@ -110,7 +110,7 @@
     "electron-webpack": "^2.8.2",
     "nodemon": "^3.1.10",
     "npm-run-all": "^4.1.5",
-    "prettier": "^2.8.8",
+    "prettier": "^3.6.2",
     "shx": "^0.4.0",
     "typescript": "^5.8.3",
     "wait-on": "^8.0.3"

src/app/App.js

@@ -36,7 +36,6 @@ import ModifiedDialog from './components/ModifiedDialog';
 
 import './App.css';
 
-// Styled components for main layout
 const VerticalHeading = styled(Typography)(({ theme }) => ({
   writingMode: 'vertical-rl',
   textOrientation: 'upright',
@@ -82,7 +81,7 @@ const App = () => {
   ));
 
   function fileModifiedSnack(run) {
-    let message = "Something happened"
+    let message = 'Something happened';
     if (run.converted) {
       message = `Converted your ${run.convertedAlignmentFrom} alignment into fasta!`;
     }
@@ -389,10 +388,18 @@ const App = () => {
             <IconButton
               onClick={() => store.config.setDarkMode(!store.config.isDarkMode)}
               size="small"
-              title={store.config.isDarkMode ? 'Switch to Light Mode' : 'Switch to Dark Mode'}
+              title={
+                store.config.isDarkMode
+                  ? 'Switch to Light Mode'
+                  : 'Switch to Dark Mode'
+              }
               sx={{ mr: 2, color: 'inherit' }}
             >
-              {store.config.isDarkMode ? <LightModeIcon fontSize="small" /> : <DarkModeIcon fontSize="small" />}
+              {store.config.isDarkMode ? (
+                <LightModeIcon fontSize="small" />
+              ) : (
+                <DarkModeIcon fontSize="small" />
+              )}
             </IconButton>
             <Box display="flex">
               {/* In dev mode the app version shown is from electron, in production it is ours */}
@@ -444,11 +451,9 @@ const App = () => {
               severity={run.exitCode === 0 ? 'success' : 'info'}
               sx={{ width: '100%' }}
             >
-              {
-                run.exitCode === 0
-                  ? 'Calculation finished!'
-                  : `Calculation cancelled!`
-              }
+              {run.exitCode === 0
+                ? 'Calculation finished!'
+                : `Calculation cancelled!`}
             </Alert>
           </Snackbar>
           {fileModifiedSnack(run)}

yarn.lock

@@ -12218,10 +12218,10 @@ prepend-http@^2.0.0:
   resolved "https://registry.yarnpkg.com/prepend-http/-/prepend-http-2.0.0.tgz#e92434bfa5ea8c19f41cdfd401d741a3c819d897"
   integrity sha512-ravE6m9Atw9Z/jjttRUZ+clIXogdghyZAuWJ3qEzjT+jI/dL1ifAqhZeC5VHzQp1MSt1+jxKkFNemj/iO7tVUA==
 
-prettier@^2.8.8:
-  version "2.8.8"
-  resolved "https://registry.yarnpkg.com/prettier/-/prettier-2.8.8.tgz#e8c5d7e98a4305ffe3de2e1fc4aca1a71c28b1da"
-  integrity sha512-tdN8qQGvNjw4CHbY+XXk0JgCXn9QiF21a55rBe5LJAU+kDyC4WQn4+awm2Xfk2lQMk5fKup9XgzTZtGkjBdP9Q==
+prettier@^3.6.2:
+  version "3.6.2"
+  resolved "https://registry.yarnpkg.com/prettier/-/prettier-3.6.2.tgz#ccda02a1003ebbb2bfda6f83a074978f608b9393"
+  integrity sha512-I7AIg5boAr5R0FFtJ6rCfD+LFsWHp81dolrFD8S79U9tb8Az2nGrJncnMSnys+bpQJfRUzqs9hnA81OAA3hCuQ==
 
 pretty-bytes@^4.0.2:
   version "4.0.2"